Wall clock time and date at job start Wed Apr 1 2020 01:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30011 * 127.33774 * 2 1 4 4 O 1.20657 * 112.30048 * 180.26537 * 3 2 1 5 5 C 1.33486 * 113.15718 * 359.72220 * 4 3 2 6 6 C 1.50704 * 126.83098 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.46628 * 29.99877 * 6 5 4 8 8 F 1.39893 * 109.47095 * 149.99638 * 6 5 4 9 9 C 1.37364 * 106.34431 * 359.97438 * 5 4 3 10 10 C 1.47389 * 128.56877 * 179.97438 * 9 5 4 11 11 O 1.21614 * 120.00096 * 89.99304 * 10 9 5 12 12 N 1.34776 * 119.99982 * 269.72755 * 10 9 5 13 13 C 1.46504 * 119.99924 * 180.27253 * 12 10 9 14 14 C 1.53006 * 109.47048 * 179.97438 * 13 12 10 15 15 C 1.53036 * 109.46157 * 295.02995 * 14 13 12 16 16 C 1.53197 * 109.31001 * 178.59541 * 15 14 13 17 17 N 1.46928 * 108.76164 * 54.65800 * 16 15 14 18 18 C 1.36938 * 120.63038 * 126.40310 * 17 16 15 19 19 H 1.08003 * 120.00199 * 331.82225 * 18 17 16 20 20 C 1.38811 * 120.00159 * 151.82253 * 18 17 16 21 21 N 1.31628 * 119.99875 * 343.07689 * 20 18 17 22 22 Si 1.86795 * 120.00399 * 163.07964 * 20 18 17 23 23 H 1.48503 * 109.47115 * 59.99632 * 22 20 18 24 24 H 1.48502 * 109.47475 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46898 * 300.00081 * 22 20 18 26 26 C 1.46920 * 118.73833 * 306.38081 * 17 16 15 27 27 C 1.53036 * 109.45879 * 174.96919 * 14 13 12 28 28 H 1.08997 * 109.46821 * 270.18498 * 1 2 3 29 29 H 1.09000 * 109.46614 * 30.17695 * 1 2 3 30 30 H 1.08999 * 109.47206 * 150.18018 * 1 2 3 31 31 H 1.08994 * 109.47250 * 270.00162 * 6 5 4 32 32 H 0.97001 * 120.00448 * 0.26929 * 12 10 9 33 33 H 1.08991 * 109.47193 * 299.99711 * 13 12 10 34 34 H 1.09005 * 109.47001 * 59.99992 * 13 12 10 35 35 H 1.09000 * 109.45479 * 55.00222 * 14 13 12 36 36 H 1.08999 * 109.49717 * 298.56143 * 15 14 13 37 37 H 1.09004 * 109.49596 * 58.66086 * 15 14 13 38 38 H 1.08996 * 109.60365 * 294.87064 * 16 15 14 39 39 H 1.08997 * 109.70274 * 174.50543 * 16 15 14 40 40 H 0.96991 * 119.99833 * 179.97438 * 21 20 18 41 41 H 1.09004 * 109.59137 * 293.81914 * 26 17 16 42 42 H 1.09001 * 109.70604 * 173.46803 * 26 17 16 43 43 H 1.08992 * 109.50182 * 301.34378 * 27 14 13 44 44 H 1.09010 * 109.49499 * 61.41057 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7206 -0.0052 5 6 3.6494 -0.6008 -0.0036 6 6 4.9712 -1.3248 -0.0093 7 9 5.9324 -0.5456 0.6435 8 9 4.8350 -2.5493 0.6533 9 6 2.3991 -1.1697 0.0042 10 6 2.0400 -2.5991 0.0084 11 8 1.8978 -3.1873 1.0633 12 7 1.8639 -3.2531 -1.1568 13 6 1.5011 -4.6725 -1.1526 14 6 1.3628 -5.1679 -2.5936 15 6 0.1909 -4.4516 -3.2687 16 6 0.0775 -4.9243 -4.7216 17 7 -0.0228 -6.3900 -4.7352 18 6 -1.0536 -7.0128 -5.3870 19 1 -2.0038 -6.5115 -5.4979 20 6 -0.8774 -8.2885 -5.9051 21 7 0.3366 -8.7685 -6.0736 22 14 -2.3630 -9.3241 -6.3633 23 1 -3.1549 -8.6204 -7.4039 24 1 -1.9085 -10.6359 -6.8904 25 1 -3.2066 -9.5389 -5.1602 26 6 1.0042 -7.1749 -4.0368 27 6 1.1076 -6.6768 -2.5918 28 1 -0.3633 0.0033 1.0277 29 1 -0.3632 0.8884 -0.5166 30 1 -0.3633 -0.8916 -0.5110 31 1 5.2843 -1.5013 -1.0383 32 1 1.9773 -2.7841 -1.9983 33 1 2.2773 -5.2445 -0.6444 34 1 0.5529 -4.8036 -0.6311 35 1 2.2816 -4.9557 -3.1402 36 1 -0.7321 -4.6836 -2.7373 37 1 0.3622 -3.3753 -3.2488 38 1 0.9620 -4.6133 -5.2774 39 1 -0.8124 -4.4929 -5.1799 40 1 0.4598 -9.6599 -6.4353 41 1 1.9644 -7.0475 -4.5367 42 1 0.7272 -8.2291 -4.0409 43 1 1.9313 -7.1845 -2.0900 44 1 0.1761 -6.8876 -2.0663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610684669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:08 Heat of formation + Delta-G solvation = -59.460367 kcal Electronic energy + Delta-G solvation = -30350.122709 eV Core-core repulsion = 25749.090961 eV Total energy + Delta-G solvation = -4601.031748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.64350 -47.66679 -45.46484 -39.90024 -37.91411 -35.12779 -35.10786 -33.54298 -32.85880 -30.87663 -29.82471 -29.29185 -27.84149 -26.86413 -24.95248 -23.72985 -22.32380 -21.45564 -21.12343 -20.75308 -19.30224 -18.81941 -18.63927 -17.73940 -17.67091 -17.51702 -16.77640 -16.20682 -15.93880 -15.20039 -14.84097 -14.48872 -14.29909 -14.09574 -13.94892 -13.89332 -13.81528 -13.68428 -13.56751 -13.41693 -13.22103 -13.19409 -12.47421 -12.43105 -12.13568 -11.99315 -11.80615 -11.41412 -11.05057 -10.76045 -10.65449 -10.59326 -10.41885 -10.30350 -10.28494 -10.21251 -9.96664 -9.63550 -9.52805 -9.23377 -8.50819 -6.72008 -5.83346 -3.26094 0.48047 1.35130 1.79524 2.09327 2.83382 3.12335 3.35444 3.40927 3.41658 3.42755 3.59713 3.99050 4.09959 4.19496 4.45977 4.55383 4.57581 4.95953 5.02136 5.05850 5.11999 5.17941 5.28061 5.35931 5.52416 5.56684 5.74878 5.81575 5.93180 6.01727 6.21367 6.24272 6.35608 6.52770 6.60428 6.67905 6.73575 6.90007 7.18680 7.31799 7.56949 7.60621 7.75152 7.85529 8.40973 9.17161 9.80421 10.36774 11.25188 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.002364 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.761789 B =11840.331801 C =12487.505787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.057 3.943 3 N -0.338 5.338 4 O 0.126 5.874 5 C -0.077 4.077 6 C 0.363 3.637 7 F -0.182 7.182 8 F -0.171 7.171 9 C -0.194 4.194 10 C 0.589 3.411 11 O -0.512 6.512 12 N -0.710 5.710 13 C 0.122 3.878 14 C -0.090 4.090 15 C -0.128 4.128 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.172 3.828 27 C -0.133 4.133 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.053 0.947 40 H 0.255 0.745 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.052 0.948 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 16.970 10.850 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 N -0.041 5.041 4 O 0.060 5.940 5 C -0.142 4.142 6 C 0.308 3.692 7 F -0.163 7.163 8 F -0.152 7.152 9 C -0.201 4.201 10 C 0.372 3.628 11 O -0.387 6.387 12 N -0.361 5.361 13 C 0.000 4.000 14 C -0.109 4.109 15 C -0.167 4.167 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.168 0.832 32 H 0.238 0.762 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.212 17.645 11.558 22.293 hybrid contribution -0.663 -1.063 -0.491 1.346 sum 6.549 16.582 11.067 20.984 Atomic orbital electron populations 1.20316 0.84250 1.04779 1.04451 1.24889 0.99018 0.85696 1.00793 1.73639 0.88915 1.23027 1.18471 1.84617 1.21655 1.20677 1.67089 1.25149 0.97101 0.85915 1.06076 1.19600 0.79680 0.75003 0.94875 1.93091 1.64282 1.74948 1.83971 1.93163 1.95651 1.42826 1.83528 1.22200 0.91888 0.96349 1.09659 1.16790 0.77958 0.83402 0.84697 1.90872 1.49615 1.67274 1.30954 1.46055 1.69764 1.12576 1.07709 1.21728 1.00946 0.78596 0.98772 1.21328 0.99281 0.97658 0.92629 1.22090 0.97833 0.97263 0.99519 1.20880 0.98562 0.86388 0.92286 1.44038 1.28729 0.99184 1.59530 1.19133 0.90535 0.99062 1.29684 0.91797 1.25043 0.96188 0.99722 0.98605 1.70014 1.19476 1.17577 1.47661 0.86375 0.82414 0.79702 0.78303 1.20901 1.21608 1.20997 1.20755 0.91012 0.97554 0.86059 1.22185 1.00541 0.92719 1.01828 0.89163 0.89374 0.89227 0.83194 0.76226 0.91177 0.91108 0.91182 0.92047 0.93590 0.96644 0.92867 0.93541 0.96442 0.89377 0.92942 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.49 36.01 0.38 -0.22 16 2 C 0.06 0.58 7.59 -79.76 -0.61 -0.03 16 3 N -0.34 -3.65 12.01 34.78 0.42 -3.23 16 4 O 0.13 1.27 11.06 18.67 0.21 1.47 16 5 C -0.08 -0.72 7.13 -34.62 -0.25 -0.97 16 6 C 0.36 2.69 5.81 36.01 0.21 2.90 16 7 F -0.18 -1.54 17.32 2.25 0.04 -1.50 16 8 F -0.17 -1.80 16.11 2.25 0.04 -1.76 16 9 C -0.19 -2.07 6.19 -102.90 -0.64 -2.70 16 10 C 0.59 7.27 6.59 -12.54 -0.08 7.19 16 11 O -0.51 -8.32 17.11 5.27 0.09 -8.23 16 12 N -0.71 -7.59 5.27 -61.39 -0.32 -7.92 16 13 C 0.12 1.52 5.06 -4.04 -0.02 1.50 16 14 C -0.09 -1.27 2.19 -90.58 -0.20 -1.47 16 15 C -0.13 -1.90 5.25 -26.61 -0.14 -2.04 16 16 C 0.15 2.79 6.52 -3.71 -0.02 2.76 16 17 N -0.59 -14.04 2.99 -172.32 -0.52 -14.56 16 18 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 19 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 20 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -25.50 11.19 55.49 0.62 -24.88 16 22 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.17 3.85 5.30 -3.71 -0.02 3.83 16 27 C -0.13 -2.29 5.36 -26.61 -0.14 -2.43 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.15 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 3.47 7.64 -40.82 -0.31 3.16 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.55 7.15 -51.93 -0.37 0.18 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 2.25 6.07 -51.93 -0.31 1.94 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -32.30 374.63 -6.60 -38.90 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.03 Total: -1.53 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.76 Total: 1.42 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.20 Total: -50.59 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: 0.30 Total: -6.75 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.30 -6.60 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610684669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.562 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds