Wall clock time and date at job start Wed Apr 1 2020 01:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30011 * 127.33774 * 2 1 4 4 O 1.20657 * 112.30048 * 180.26537 * 3 2 1 5 5 C 1.33486 * 113.15718 * 359.72220 * 4 3 2 6 6 C 1.50704 * 126.83098 * 179.97438 * 5 4 3 7 7 F 1.39905 * 109.46628 * 29.99877 * 6 5 4 8 8 F 1.39893 * 109.47095 * 149.99638 * 6 5 4 9 9 C 1.37364 * 106.34431 * 359.97438 * 5 4 3 10 10 C 1.47389 * 128.56877 * 179.97438 * 9 5 4 11 11 O 1.21614 * 120.00096 * 89.99304 * 10 9 5 12 12 N 1.34776 * 119.99982 * 269.72755 * 10 9 5 13 13 C 1.46504 * 119.99924 * 180.27253 * 12 10 9 14 14 C 1.53006 * 109.47048 * 179.97438 * 13 12 10 15 15 C 1.53036 * 109.46157 * 295.02995 * 14 13 12 16 16 C 1.53197 * 109.31001 * 178.59541 * 15 14 13 17 17 N 1.46928 * 108.76164 * 54.65800 * 16 15 14 18 18 C 1.36938 * 120.63038 * 126.40310 * 17 16 15 19 19 H 1.08003 * 120.00199 * 331.82225 * 18 17 16 20 20 C 1.38811 * 120.00159 * 151.82253 * 18 17 16 21 21 N 1.31628 * 119.99875 * 343.07689 * 20 18 17 22 22 Si 1.86795 * 120.00399 * 163.07964 * 20 18 17 23 23 H 1.48503 * 109.47115 * 59.99632 * 22 20 18 24 24 H 1.48502 * 109.47475 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46898 * 300.00081 * 22 20 18 26 26 C 1.46920 * 118.73833 * 306.38081 * 17 16 15 27 27 C 1.53036 * 109.45879 * 174.96919 * 14 13 12 28 28 H 1.08997 * 109.46821 * 270.18498 * 1 2 3 29 29 H 1.09000 * 109.46614 * 30.17695 * 1 2 3 30 30 H 1.08999 * 109.47206 * 150.18018 * 1 2 3 31 31 H 1.08994 * 109.47250 * 270.00162 * 6 5 4 32 32 H 0.97001 * 120.00448 * 0.26929 * 12 10 9 33 33 H 1.08991 * 109.47193 * 299.99711 * 13 12 10 34 34 H 1.09005 * 109.47001 * 59.99992 * 13 12 10 35 35 H 1.09000 * 109.45479 * 55.00222 * 14 13 12 36 36 H 1.08999 * 109.49717 * 298.56143 * 15 14 13 37 37 H 1.09004 * 109.49596 * 58.66086 * 15 14 13 38 38 H 1.08996 * 109.60365 * 294.87064 * 16 15 14 39 39 H 1.08997 * 109.70274 * 174.50543 * 16 15 14 40 40 H 0.96991 * 119.99833 * 179.97438 * 21 20 18 41 41 H 1.09004 * 109.59137 * 293.81914 * 26 17 16 42 42 H 1.09001 * 109.70604 * 173.46803 * 26 17 16 43 43 H 1.08992 * 109.50182 * 301.34378 * 27 14 13 44 44 H 1.09010 * 109.49499 * 61.41057 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7206 -0.0052 5 6 3.6494 -0.6008 -0.0036 6 6 4.9712 -1.3248 -0.0093 7 9 5.9324 -0.5456 0.6435 8 9 4.8350 -2.5493 0.6533 9 6 2.3991 -1.1697 0.0042 10 6 2.0400 -2.5991 0.0084 11 8 1.8978 -3.1873 1.0633 12 7 1.8639 -3.2531 -1.1568 13 6 1.5011 -4.6725 -1.1526 14 6 1.3628 -5.1679 -2.5936 15 6 0.1909 -4.4516 -3.2687 16 6 0.0775 -4.9243 -4.7216 17 7 -0.0228 -6.3900 -4.7352 18 6 -1.0536 -7.0128 -5.3870 19 1 -2.0038 -6.5115 -5.4979 20 6 -0.8774 -8.2885 -5.9051 21 7 0.3366 -8.7685 -6.0736 22 14 -2.3630 -9.3241 -6.3633 23 1 -3.1549 -8.6204 -7.4039 24 1 -1.9085 -10.6359 -6.8904 25 1 -3.2066 -9.5389 -5.1602 26 6 1.0042 -7.1749 -4.0368 27 6 1.1076 -6.6768 -2.5918 28 1 -0.3633 0.0033 1.0277 29 1 -0.3632 0.8884 -0.5166 30 1 -0.3633 -0.8916 -0.5110 31 1 5.2843 -1.5013 -1.0383 32 1 1.9773 -2.7841 -1.9983 33 1 2.2773 -5.2445 -0.6444 34 1 0.5529 -4.8036 -0.6311 35 1 2.2816 -4.9557 -3.1402 36 1 -0.7321 -4.6836 -2.7373 37 1 0.3622 -3.3753 -3.2488 38 1 0.9620 -4.6133 -5.2774 39 1 -0.8124 -4.4929 -5.1799 40 1 0.4598 -9.6599 -6.4353 41 1 1.9644 -7.0475 -4.5367 42 1 0.7272 -8.2291 -4.0409 43 1 1.9313 -7.1845 -2.0900 44 1 0.1761 -6.8876 -2.0663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610684669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:07 Heat of formation + Delta-G solvation = -79.765734 kcal Electronic energy + Delta-G solvation = -30351.003216 eV Core-core repulsion = 25749.090961 eV Total energy + Delta-G solvation = -4601.912255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.29010 -48.32664 -46.21912 -40.92069 -39.33195 -36.46515 -35.86915 -34.58736 -34.12137 -32.50303 -31.38584 -29.94713 -28.90030 -27.90083 -26.23005 -25.01999 -23.78901 -22.69043 -22.12295 -21.60713 -20.71553 -19.62746 -19.40454 -18.68865 -18.39490 -18.32339 -18.21388 -17.22073 -16.86990 -16.75206 -16.11927 -15.65409 -15.33523 -15.27746 -15.10958 -14.91917 -14.73617 -14.61168 -14.57526 -14.39256 -14.16114 -14.02725 -13.83848 -13.81505 -13.41499 -12.98372 -12.82316 -12.72447 -12.56546 -12.53476 -12.26628 -12.02783 -11.81592 -11.68276 -11.52437 -11.16019 -11.12877 -11.08209 -11.02096 -10.50822 -10.23061 -8.64232 -7.85677 -5.30249 -0.25833 0.60498 1.06292 1.20934 1.47477 1.49835 1.56169 1.94161 2.48020 2.52735 2.86826 2.89743 3.28895 3.29805 3.41710 3.64243 3.73772 3.79206 3.87415 3.89066 3.96793 4.10222 4.31370 4.52716 4.53443 4.57369 4.63374 4.71394 4.75674 4.82540 4.96651 5.01826 5.03957 5.14425 5.25031 5.31738 5.34614 5.46161 5.58249 5.68558 5.82626 6.31221 6.42109 6.83703 6.95717 7.18278 7.91125 8.40792 9.20088 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.002364 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.761789 B =11840.331801 C =12487.505787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.059 3.941 3 N -0.355 5.355 4 O 0.123 5.877 5 C -0.064 4.064 6 C 0.360 3.640 7 F -0.188 7.188 8 F -0.190 7.190 9 C -0.214 4.214 10 C 0.598 3.402 11 O -0.555 6.555 12 N -0.695 5.695 13 C 0.135 3.865 14 C -0.078 4.078 15 C -0.115 4.115 16 C 0.139 3.861 17 N -0.612 5.612 18 C -0.262 4.262 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.280 1.280 26 C 0.177 3.823 27 C -0.122 4.122 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.203 0.797 32 H 0.416 0.584 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.018 0.982 39 H 0.050 0.950 40 H 0.249 0.751 41 H -0.001 1.001 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.531 18.639 11.177 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 N -0.060 5.060 4 O 0.058 5.942 5 C -0.129 4.129 6 C 0.305 3.695 7 F -0.169 7.169 8 F -0.171 7.171 9 C -0.221 4.221 10 C 0.382 3.618 11 O -0.433 6.433 12 N -0.347 5.347 13 C 0.012 3.988 14 C -0.097 4.097 15 C -0.154 4.154 16 C 0.014 3.986 17 N -0.336 5.336 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.206 1.206 26 C 0.052 3.948 27 C -0.162 4.162 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.220 0.780 32 H 0.254 0.746 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.017 0.983 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.276 19.365 11.869 23.850 hybrid contribution -0.657 -1.517 -0.613 1.763 sum 6.619 17.848 11.256 22.115 Atomic orbital electron populations 1.20457 0.82717 1.05771 1.05052 1.25276 1.00015 0.85195 0.99756 1.73644 0.89210 1.23503 1.19594 1.84606 1.21527 1.20943 1.67088 1.25522 0.97646 0.85603 1.04156 1.20278 0.78629 0.73768 0.96789 1.93077 1.64344 1.75125 1.84395 1.93127 1.95692 1.44027 1.84214 1.22044 0.92722 0.95586 1.11740 1.16854 0.76964 0.83782 0.84177 1.90857 1.51613 1.68344 1.32476 1.45855 1.68895 1.11821 1.08082 1.21427 1.00785 0.79517 0.97057 1.21154 0.99433 0.95187 0.93884 1.21941 0.97783 0.99539 0.96109 1.21078 0.98492 0.83753 0.95280 1.44330 1.28345 1.01242 1.59695 1.19464 0.91434 0.99444 1.28925 0.91806 1.25746 0.98433 1.00933 0.99438 1.70162 1.21214 1.17492 1.49143 0.85417 0.79549 0.77874 0.78069 1.20179 1.22132 1.20592 1.20558 0.89603 0.95741 0.88928 1.21977 1.00981 0.95285 0.97965 0.88708 0.87949 0.88641 0.78035 0.74612 0.91136 0.91725 0.90084 0.92886 0.89635 0.96401 0.93170 0.94173 0.98307 0.93254 0.91124 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.49 71.24 0.75 -0.31 16 2 C 0.06 1.07 7.59 45.16 0.34 1.41 16 3 N -0.36 -7.06 12.01 -44.78 -0.54 -7.60 16 4 O 0.12 2.24 11.06 77.05 0.85 3.09 16 5 C -0.06 -1.05 7.13 25.48 0.18 -0.87 16 6 C 0.36 4.39 5.81 71.24 0.41 4.81 16 7 F -0.19 -2.82 17.32 44.97 0.78 -2.04 16 8 F -0.19 -3.64 16.11 44.97 0.72 -2.91 16 9 C -0.21 -4.11 6.19 -18.75 -0.12 -4.23 16 10 C 0.60 13.49 6.59 86.65 0.57 14.06 16 11 O -0.55 -17.32 17.11 -4.07 -0.07 -17.39 16 12 N -0.70 -12.73 5.27 -466.39 -2.46 -15.19 16 13 C 0.14 3.01 5.06 86.38 0.44 3.45 16 14 C -0.08 -1.99 2.19 -10.77 -0.02 -2.02 16 15 C -0.11 -3.09 5.25 30.67 0.16 -2.93 16 16 C 0.14 5.14 6.52 86.36 0.56 5.70 16 17 N -0.61 -29.12 2.99 -699.10 -2.09 -31.21 16 18 C -0.26 -14.04 9.58 84.03 0.81 -13.23 16 19 H 0.06 3.34 7.89 -2.91 -0.02 3.31 16 20 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 21 N -0.93 -54.20 11.19 21.65 0.24 -53.96 16 22 Si 0.96 44.15 29.59 68.60 2.03 46.18 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C 0.18 8.04 5.30 86.36 0.46 8.50 16 27 C -0.12 -4.09 5.36 30.67 0.16 -3.92 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.20 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.42 5.50 7.64 -92.71 -0.71 4.79 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.66 7.15 -2.38 -0.02 1.65 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 40 H 0.25 14.10 8.31 -92.72 -0.77 13.33 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.05 2.61 6.07 -2.39 -0.01 2.59 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -72.03 374.63 4.93 -67.10 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.34 Total: 5.83 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.12 Total: 8.10 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.84 Total: -107.96 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.78 Total: -14.30 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 1.50 Total: -4.95 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.03 4.93 -67.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610684669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.666 kcal (2) G-P(sol) polarization free energy of solvation -72.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds