Wall clock time and date at job start Wed Apr 1 2020 02:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.47053 * 2 1 4 4 C 1.34626 * 116.99801 * 180.02562 * 3 2 1 5 5 O 1.21516 * 120.00247 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00386 * 180.02562 * 4 3 2 7 7 C 1.46963 * 120.60031 * 180.02562 * 6 4 3 8 8 C 1.53366 * 108.63311 * 235.24679 * 7 6 4 9 9 N 1.46967 * 108.63461 * 310.57313 * 8 7 6 10 10 C 1.34775 * 120.59143 * 235.20526 * 9 8 7 11 11 O 1.21279 * 120.00334 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99777 * 179.97438 * 10 9 8 13 13 N 1.46504 * 109.47206 * 183.84459 * 12 10 9 14 14 C 1.36945 * 119.99758 * 273.61226 * 13 12 10 15 15 H 1.07994 * 119.99911 * 16.23716 * 14 13 12 16 16 C 1.38807 * 119.99483 * 196.23575 * 14 13 12 17 17 N 1.31618 * 120.00300 * 15.75715 * 16 14 13 18 18 Si 1.86802 * 119.99692 * 195.75327 * 16 14 13 19 19 H 1.48495 * 109.47058 * 60.00262 * 18 16 14 20 20 H 1.48510 * 109.46960 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47216 * 300.00075 * 18 16 14 22 22 C 1.46492 * 119.99827 * 93.88355 * 13 12 10 23 23 C 1.50701 * 109.46991 * 83.33465 * 22 13 12 24 24 O 1.20828 * 120.00163 * 355.71965 * 23 22 13 25 25 O 1.34231 * 119.99713 * 175.71970 * 23 22 13 26 26 C 1.46961 * 118.81089 * 55.48057 * 9 8 7 27 27 C 1.46967 * 120.58863 * 0.02562 * 6 4 3 28 28 H 1.09001 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47126 * 299.99796 * 1 2 3 30 30 H 1.08999 * 109.47363 * 59.99911 * 1 2 3 31 31 H 1.09000 * 109.46418 * 239.99997 * 2 1 3 32 32 H 1.08997 * 109.46662 * 120.00310 * 2 1 3 33 33 H 1.09001 * 109.60765 * 115.49834 * 7 6 4 34 34 H 1.08996 * 109.74979 * 355.07338 * 7 6 4 35 35 H 1.09004 * 109.61108 * 190.82899 * 8 7 6 36 36 H 1.08997 * 109.75514 * 70.40012 * 8 7 6 37 37 H 1.09003 * 109.47193 * 63.84621 * 12 10 9 38 38 H 1.08992 * 109.47322 * 303.84467 * 12 10 9 39 39 H 0.97005 * 120.00132 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.47002 * 203.33219 * 22 13 12 41 41 H 1.08991 * 109.47379 * 323.33192 * 22 13 12 42 42 H 0.96706 * 116.99571 * 180.02562 * 25 23 22 43 43 H 1.09000 * 109.60947 * 64.27002 * 26 9 8 44 44 H 1.09003 * 109.61038 * 184.77377 * 26 9 8 45 45 H 1.09007 * 109.61062 * 244.50249 * 27 6 4 46 46 H 1.09001 * 109.61081 * 4.83329 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3487 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0015 6 7 3.8640 2.7908 0.0000 7 6 5.3189 2.9984 -0.0012 8 6 5.6880 3.8869 1.1932 9 7 4.8048 5.0616 1.1953 10 6 5.3200 6.3070 1.1966 11 8 6.5223 6.4659 1.1966 12 6 4.4020 7.5022 1.1982 13 7 5.1974 8.7291 1.1068 14 6 5.6949 9.3087 2.2434 15 1 5.7343 8.7454 3.1640 16 6 6.1485 10.6202 2.2121 17 7 5.8267 11.4041 1.2050 18 14 7.2157 11.2726 3.5996 19 1 8.4587 10.4652 3.6897 20 1 7.5646 12.6909 3.3307 21 1 6.4717 11.1808 4.8815 22 6 5.4555 9.3390 -0.1998 23 6 4.2825 10.1996 -0.5930 24 8 3.2969 10.2331 0.1052 25 8 4.3327 10.9289 -1.7187 26 6 3.3500 4.8539 1.2021 27 6 2.9808 3.9655 0.0016 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.6177 3.4884 -0.9279 34 1 5.8280 2.0386 0.0857 35 1 6.7253 4.2092 1.1026 36 1 5.5577 3.3298 2.1209 37 1 3.8216 7.5133 2.1208 38 1 3.7266 7.4427 0.3448 39 1 6.1435 12.3207 1.1833 40 1 6.3540 9.9536 -0.1428 41 1 5.5975 8.5561 -0.9446 42 1 3.5562 11.4656 -1.9291 43 1 3.0549 4.3624 2.1291 44 1 2.8428 5.8151 1.1173 45 1 3.1135 4.5243 -0.9249 46 1 1.9433 3.6430 0.0888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829861828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:45 Heat of formation + Delta-G solvation = -156.430765 kcal Electronic energy + Delta-G solvation = -31220.931532 eV Core-core repulsion = 26726.782347 eV Total energy + Delta-G solvation = -4494.149184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.90029 -39.60319 -38.73492 -37.61407 -36.45513 -35.49438 -34.41818 -34.00508 -32.20199 -31.65775 -31.17730 -28.55680 -27.58139 -26.38639 -24.24479 -23.70842 -22.94337 -22.22689 -20.83927 -20.11448 -19.21047 -17.94269 -17.26058 -17.00206 -16.86520 -16.73641 -16.27312 -15.86834 -15.24047 -15.19950 -15.05584 -15.01950 -14.89175 -14.14481 -13.95367 -13.85705 -13.55526 -13.44858 -13.16815 -13.08452 -12.77985 -12.57769 -12.21935 -12.00593 -11.83933 -11.69118 -11.59527 -11.44280 -11.36754 -11.03806 -10.94043 -10.81061 -10.68876 -10.59341 -10.24406 -10.06632 -10.02780 -9.53449 -9.38863 -9.15141 -8.57365 -8.30543 -7.13260 -5.93541 -3.29896 1.83019 2.58211 3.15125 3.23572 3.38712 3.43034 3.46547 3.57710 3.80333 4.29262 4.53248 4.59567 4.60605 4.63808 4.69907 4.90414 4.94497 4.99589 5.12337 5.16223 5.20847 5.28818 5.35900 5.42630 5.44941 5.51071 5.60844 5.65441 5.74884 5.83603 5.97199 6.07212 6.16418 6.18364 6.37748 6.65995 6.88244 7.05716 7.12014 7.61897 7.69919 7.79343 8.03072 8.13051 8.76396 8.97903 9.35968 9.63032 10.03267 11.17015 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002657 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.923465 B =10536.418864 C =11355.262701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.652 3.348 5 O -0.576 6.576 6 N -0.592 5.592 7 C 0.115 3.885 8 C 0.097 3.903 9 N -0.628 5.628 10 C 0.484 3.516 11 O -0.513 6.513 12 C 0.135 3.865 13 N -0.545 5.545 14 C -0.241 4.241 15 H 0.078 0.922 16 C -0.001 4.001 17 N -0.915 5.915 18 Si 0.918 3.082 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.188 3.812 23 C 0.484 3.516 24 O -0.530 6.530 25 O -0.538 6.538 26 C 0.097 3.903 27 C 0.096 3.904 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.259 0.741 40 H 0.128 0.872 41 H 0.048 0.952 42 H 0.381 0.619 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 -18.157 -5.081 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 O -0.284 6.284 4 C 0.406 3.594 5 O -0.466 6.466 6 N -0.333 5.333 7 C -0.007 4.007 8 C -0.027 4.027 9 N -0.367 5.367 10 C 0.270 3.730 11 O -0.386 6.386 12 C 0.004 3.996 13 N -0.263 5.263 14 C -0.369 4.369 15 H 0.095 0.905 16 C -0.197 4.197 17 N -0.562 5.562 18 Si 0.748 3.252 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.059 3.941 23 C 0.325 3.675 24 O -0.417 6.417 25 O -0.348 6.348 26 C -0.028 4.028 27 C -0.027 4.027 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.066 0.934 42 H 0.236 0.764 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.655 -18.407 -4.776 20.893 hybrid contribution -0.152 0.737 0.652 0.995 sum -8.807 -17.670 -4.124 20.170 Atomic orbital electron populations 1.21833 0.92491 1.03065 1.03642 1.22948 0.94826 0.78738 1.02730 1.86222 1.22051 1.33121 1.86995 1.17974 0.81174 0.83973 0.76262 1.90984 1.59839 1.39360 1.56372 1.46875 1.07578 1.03001 1.75804 1.22101 0.77544 1.01551 0.99491 1.21870 0.97106 0.86553 0.97166 1.48453 1.05983 1.05890 1.76368 1.23181 0.91215 0.83984 0.74577 1.90653 1.15868 1.84853 1.47202 1.20706 0.91653 0.85267 1.02020 1.43419 1.57693 1.22003 1.03149 1.19185 1.34010 0.94487 0.89260 0.90458 1.24825 1.00931 0.95441 0.98527 1.69739 1.47001 1.06802 1.32626 0.86106 0.80602 0.77487 0.81008 1.20813 1.21582 1.20980 1.20348 0.95008 0.93411 0.85320 1.25249 0.89188 0.77514 0.75517 1.90493 1.35028 1.64992 1.51225 1.84633 1.47328 1.58135 1.44680 1.22153 0.81729 1.01056 0.97823 1.22294 0.94664 0.86221 0.99548 0.90040 0.91364 0.91421 0.91248 0.91210 0.90382 0.87799 0.87565 0.91636 0.89995 0.91061 0.93005 0.85436 0.93448 0.76355 0.91097 0.87834 0.90316 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.40 16 2 C 0.08 0.65 6.19 37.16 0.23 0.88 16 3 O -0.37 -3.81 8.85 -40.29 -0.36 -4.17 16 4 C 0.65 8.02 8.43 54.06 0.46 8.47 16 5 O -0.58 -8.59 15.54 -19.29 -0.30 -8.89 16 6 N -0.59 -6.54 2.95 -177.99 -0.52 -7.07 16 7 C 0.12 1.27 6.59 -3.60 -0.02 1.25 16 8 C 0.10 1.20 6.59 -3.60 -0.02 1.18 16 9 N -0.63 -8.60 2.94 -172.20 -0.51 -9.10 16 10 C 0.48 8.78 7.75 -10.98 -0.09 8.69 16 11 O -0.51 -11.47 15.74 5.56 0.09 -11.38 16 12 C 0.14 2.58 4.39 -5.19 -0.02 2.56 16 13 N -0.55 -13.17 1.60 -175.99 -0.28 -13.45 16 14 C -0.24 -6.47 9.59 -15.06 -0.14 -6.62 16 15 H 0.08 2.07 7.88 -52.49 -0.41 1.65 16 16 C 0.00 -0.02 5.04 -17.43 -0.09 -0.11 16 17 N -0.92 -25.58 9.15 55.49 0.51 -25.07 16 18 Si 0.92 21.97 29.58 -169.99 -5.03 16.94 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.19 4.41 5.46 -5.20 -0.03 4.38 16 23 C 0.48 11.27 6.55 36.01 0.24 11.51 16 24 O -0.53 -13.69 17.06 -18.75 -0.32 -14.01 16 25 O -0.54 -10.67 13.42 -39.26 -0.53 -11.20 16 26 C 0.10 0.99 6.54 -3.36 -0.02 0.97 16 27 C 0.10 0.88 6.63 -3.35 -0.02 0.86 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.15 7.00 -51.93 -0.36 0.79 16 35 H 0.11 1.46 6.99 -51.93 -0.36 1.10 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.52 7.97 -51.93 -0.41 1.11 16 38 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.13 3.32 6.08 -51.93 -0.32 3.00 16 41 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 42 H 0.38 5.89 9.10 45.56 0.41 6.30 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.00 5.89 -51.93 -0.31 0.69 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.79 6.91 -51.93 -0.36 0.43 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -36.22 383.15 -6.50 -42.72 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.87 Total: 5.29 kcal Atomic # 6 Polarization: 32.78 SS G_CDS: 0.84 Total: 33.62 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.81 Total: -54.70 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -1.42 Total: -49.65 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.22 -6.50 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829861828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.710 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds