Wall clock time and date at job start Wed Apr 1 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99641 * 2 1 4 4 C 1.50701 * 109.47377 * 274.99988 * 3 2 1 5 5 H 1.08007 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00494 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99595 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00503 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47115 * 60.00089 * 8 6 4 10 10 H 1.48494 * 109.47394 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47063 * 300.00531 * 8 6 4 12 12 S 1.65598 * 120.00190 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40000 * 156.45645 * 12 2 1 14 14 O 1.42101 * 106.40079 * 23.53853 * 12 2 1 15 15 N 1.65593 * 107.21702 * 269.99550 * 12 2 1 16 16 C 1.50178 * 120.53442 * 89.99941 * 15 12 2 17 17 C 1.46246 * 107.52777 * 109.56422 * 16 15 12 18 18 C 1.52527 * 114.27693 * 58.41048 * 17 16 15 19 19 C 1.50124 * 105.41707 * 270.59022 * 18 17 16 20 20 H 1.08999 * 109.20148 * 337.38781 * 19 18 17 21 21 N 1.46490 * 109.20933 * 218.02864 * 19 18 17 22 22 C 1.35318 * 125.86771 * 324.99869 * 21 19 18 23 23 C 1.35356 * 106.17366 * 180.02562 * 22 21 19 24 24 N 1.33774 * 106.49715 * 359.97438 * 23 22 21 25 25 N 1.28639 * 108.88340 * 359.73588 * 24 23 22 26 26 C 1.54842 * 110.81744 * 97.68019 * 19 18 17 27 27 C 1.43430 * 120.54030 * 269.97574 * 15 12 2 28 28 H 1.09002 * 109.46923 * 269.99548 * 1 2 3 29 29 H 1.08994 * 109.47473 * 29.99904 * 1 2 3 30 30 H 1.08998 * 109.46738 * 150.00041 * 1 2 3 31 31 H 1.08997 * 109.47086 * 35.00314 * 3 2 1 32 32 H 1.08999 * 109.47226 * 155.00511 * 3 2 1 33 33 H 0.97007 * 120.00120 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.84482 * 350.06182 * 16 15 12 35 35 H 1.08995 * 109.84887 * 229.07289 * 16 15 12 36 36 H 1.08997 * 108.51848 * 179.65080 * 17 16 15 37 37 H 1.08998 * 108.52362 * 297.32026 * 17 16 15 38 38 H 1.09003 * 110.24761 * 29.56401 * 18 17 16 39 39 H 1.08998 * 110.24760 * 151.46766 * 18 17 16 40 40 H 1.07990 * 126.91433 * 359.97438 * 22 21 19 41 41 H 1.07990 * 126.74956 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.35911 * 81.34018 * 26 19 18 43 43 H 1.09001 * 109.36099 * 201.06410 * 26 19 18 44 44 H 1.09002 * 108.16218 * 149.87144 * 27 15 12 45 45 H 1.09005 * 107.99625 * 33.18298 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9282 1.1940 -2.2332 6 6 2.9996 2.9510 -1.6664 7 7 3.5023 3.6476 -0.6705 8 14 3.1774 3.5674 -3.4207 9 1 1.8308 3.7728 -4.0121 10 1 3.9199 4.8534 -3.4207 11 1 3.9232 2.5657 -4.2241 12 16 2.2931 -1.4341 -0.0006 13 8 3.5760 -1.1564 -0.5450 14 8 1.4114 -2.4062 -0.5455 15 7 2.5383 -1.8592 1.5809 16 6 1.5310 -2.7019 2.3094 17 6 2.1282 -4.0205 2.5179 18 6 3.4344 -4.0000 3.3051 19 6 4.5172 -3.8389 2.2778 20 1 4.1471 -4.1790 1.3106 21 7 5.6732 -4.6514 2.6644 22 6 6.0937 -4.8803 3.9300 23 6 7.1850 -5.6744 3.8268 24 7 7.3758 -5.8900 2.5205 25 7 6.4599 -5.2751 1.8589 26 6 4.9513 -2.3570 2.1635 27 6 3.7162 -1.4290 2.2770 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6501 2.0043 0.5895 32 1 3.1857 1.1178 0.4342 33 1 3.9657 4.4813 -0.8471 34 1 0.6252 -2.7964 1.7106 35 1 1.2940 -2.2468 3.2710 36 1 1.4117 -4.6445 3.0520 37 1 2.3203 -4.4714 1.5443 38 1 3.4439 -3.1588 3.9983 39 1 3.5625 -4.9365 3.8478 40 1 5.6488 -4.5044 4.8393 41 1 7.7838 -6.0584 4.6394 42 1 5.6534 -2.1234 2.9639 43 1 5.4349 -2.1954 1.2002 44 1 3.4671 -1.3226 3.3328 45 1 3.9933 -0.4465 1.8949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907354830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:03 Heat of formation + Delta-G solvation = 39.169247 kcal Electronic energy + Delta-G solvation = -29614.714685 eV Core-core repulsion = 25604.092976 eV Total energy + Delta-G solvation = -4010.621709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.38543 -39.37401 -36.81922 -35.57291 -35.26726 -35.22647 -33.09616 -32.48943 -31.56559 -31.07649 -27.84871 -26.73653 -25.78988 -25.11326 -22.95079 -22.57055 -22.29443 -21.63784 -20.39354 -18.66213 -17.84749 -17.35080 -16.82500 -16.59047 -16.24467 -16.09109 -15.33682 -15.13020 -15.00552 -14.62427 -14.37573 -14.19284 -13.85754 -13.53706 -13.37376 -13.10250 -12.86608 -12.41116 -12.23207 -12.19157 -11.94215 -11.90949 -11.75301 -11.64920 -11.53031 -11.41062 -11.22085 -11.12828 -11.00154 -10.92170 -10.78006 -10.70545 -10.50270 -10.14869 -10.08260 -9.83297 -9.49054 -9.14865 -8.48870 -8.13985 -6.12019 -4.16263 1.03599 1.51310 2.21103 2.49806 3.26513 3.30921 3.34691 3.39611 3.86847 4.05708 4.19922 4.36381 4.40609 4.46500 4.64152 4.76142 4.81428 4.84904 4.88247 4.94245 5.08824 5.13677 5.22886 5.29668 5.42918 5.43539 5.49832 5.57396 5.57507 5.70884 5.73783 5.87273 5.90547 5.92995 6.04302 6.10306 6.21639 6.43434 6.48951 6.64423 7.12850 7.31184 7.51610 7.85268 8.13687 8.44455 8.85755 9.49516 10.96446 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.003402 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.827371 B = 8228.367478 C = 9152.297575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.775 3.225 13 O -0.956 6.956 14 O -0.994 6.994 15 N -1.012 6.012 16 C 0.125 3.875 17 C -0.140 4.140 18 C -0.128 4.128 19 C 0.143 3.857 20 H 0.112 0.888 21 N -0.282 5.282 22 C -0.052 4.052 23 C -0.057 4.057 24 N -0.278 5.278 25 N -0.084 5.084 26 C -0.150 4.150 27 C 0.132 3.868 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 -13.333 15.475 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.838 5.838 3 C 0.136 3.864 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.199 1.199 12 S 2.783 3.217 13 O -0.939 6.939 14 O -0.978 6.978 15 N -0.849 5.849 16 C 0.001 3.999 17 C -0.179 4.179 18 C -0.167 4.167 19 C 0.042 3.958 20 H 0.130 0.870 21 N -0.076 5.076 22 C -0.203 4.203 23 C -0.214 4.214 24 N -0.144 5.144 25 N -0.063 5.063 26 C -0.191 4.191 27 C 0.004 3.996 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.204 0.796 41 H 0.204 0.796 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.674 -13.948 13.253 19.425 hybrid contribution -0.203 1.030 0.593 1.206 sum -2.878 -12.917 13.846 19.154 Atomic orbital electron populations 1.21356 0.80133 1.03518 1.00199 1.57668 1.14360 1.23322 1.88465 1.19054 0.90808 0.78770 0.97739 1.21440 1.36363 1.06388 0.92871 0.92260 1.24918 0.95000 0.96433 0.97537 1.69900 1.37197 1.15354 1.31017 0.86578 0.78360 0.78064 0.84624 1.20135 1.21104 1.19923 1.02273 0.73629 0.72925 0.72825 1.93644 1.40323 1.84785 1.75191 1.93519 1.67430 1.60413 1.76444 1.58630 1.27442 1.65729 1.33128 1.20796 0.91193 0.89776 0.98097 1.20780 0.96895 0.98856 1.01372 1.21536 0.93710 1.03885 0.97526 1.22150 0.81573 0.91011 1.01054 0.86966 1.47981 1.21975 1.32577 1.05049 1.23578 1.00626 1.05787 0.90355 1.23606 0.99135 1.03079 0.95620 1.75130 1.16875 1.18190 1.04183 1.78381 1.00082 1.08378 1.19499 1.23224 0.99420 0.91147 1.05285 1.20609 0.83745 0.96911 0.98352 0.94248 0.90332 0.91650 0.94727 0.94616 0.92581 0.88636 0.90333 0.90118 0.90840 0.88982 0.89900 0.79563 0.79608 0.89654 0.89015 0.90588 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.68 59.85 0.64 2.16 16 2 N -1.00 -19.52 3.23 -123.05 -0.40 -19.92 16 3 C 0.26 6.18 5.08 -5.19 -0.03 6.15 16 4 C -0.53 -14.60 9.38 -34.44 -0.32 -14.92 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -25.50 13.29 55.43 0.74 -24.77 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 S 2.77 51.44 6.00 -107.50 -0.65 50.80 16 13 O -0.96 -21.68 16.23 -57.17 -0.93 -22.61 16 14 O -0.99 -19.23 15.55 -57.17 -0.89 -20.12 16 15 N -1.01 -13.00 2.94 -116.10 -0.34 -13.34 16 16 C 0.13 1.13 5.93 -5.19 -0.03 1.10 16 17 C -0.14 -1.10 5.20 -30.18 -0.16 -1.25 16 18 C -0.13 -0.91 4.74 -28.40 -0.13 -1.04 16 19 C 0.14 1.51 2.89 -68.39 -0.20 1.31 16 20 H 0.11 1.39 6.82 -51.93 -0.35 1.03 16 21 N -0.28 -3.30 3.20 -55.22 -0.18 -3.48 16 22 C -0.05 -0.47 10.24 -17.04 -0.17 -0.64 16 23 C -0.06 -0.59 12.05 -17.73 -0.21 -0.80 16 24 N -0.28 -4.07 12.41 30.23 0.38 -3.69 16 25 N -0.08 -1.28 13.16 60.35 0.79 -0.49 16 26 C -0.15 -1.72 6.03 -24.76 -0.15 -1.87 16 27 C 0.13 1.53 4.75 -4.66 -0.02 1.51 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 30 H 0.06 0.99 7.02 -51.93 -0.36 0.63 16 31 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.04 0.90 7.19 -51.93 -0.37 0.52 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.10 0.90 7.30 -51.93 -0.38 0.52 16 35 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.72 6.92 -51.93 -0.36 0.36 16 38 H 0.09 0.50 6.29 -51.93 -0.33 0.18 16 39 H 0.08 0.50 7.26 -51.93 -0.38 0.13 16 40 H 0.19 0.89 7.90 -52.49 -0.41 0.47 16 41 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.08 0.62 6.89 -51.93 -0.36 0.26 16 45 H 0.09 1.22 7.37 -51.93 -0.38 0.83 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -35.71 371.29 -8.39 -44.11 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.61 Total: -2.03 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.89 Total: -6.62 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: 0.99 Total: -65.69 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.82 Total: -42.72 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 51.44 SS G_CDS: -0.65 Total: 50.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.71 -8.39 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907354830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.277 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds