Wall clock time and date at job start Wed Apr 1 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99641 * 2 1 4 4 C 1.50701 * 109.47377 * 274.99988 * 3 2 1 5 5 H 1.08007 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00494 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99595 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00503 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47115 * 60.00089 * 8 6 4 10 10 H 1.48494 * 109.47394 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47063 * 300.00531 * 8 6 4 12 12 S 1.65598 * 120.00190 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40000 * 156.45645 * 12 2 1 14 14 O 1.42101 * 106.40079 * 23.53853 * 12 2 1 15 15 N 1.65593 * 107.21702 * 269.99550 * 12 2 1 16 16 C 1.50178 * 120.53442 * 89.99941 * 15 12 2 17 17 C 1.46246 * 107.52777 * 109.56422 * 16 15 12 18 18 C 1.52527 * 114.27693 * 58.41048 * 17 16 15 19 19 C 1.50124 * 105.41707 * 270.59022 * 18 17 16 20 20 H 1.08999 * 109.20148 * 337.38781 * 19 18 17 21 21 N 1.46490 * 109.20933 * 218.02864 * 19 18 17 22 22 C 1.35318 * 125.86771 * 324.99869 * 21 19 18 23 23 C 1.35356 * 106.17366 * 180.02562 * 22 21 19 24 24 N 1.33774 * 106.49715 * 359.97438 * 23 22 21 25 25 N 1.28639 * 108.88340 * 359.73588 * 24 23 22 26 26 C 1.54842 * 110.81744 * 97.68019 * 19 18 17 27 27 C 1.43430 * 120.54030 * 269.97574 * 15 12 2 28 28 H 1.09002 * 109.46923 * 269.99548 * 1 2 3 29 29 H 1.08994 * 109.47473 * 29.99904 * 1 2 3 30 30 H 1.08998 * 109.46738 * 150.00041 * 1 2 3 31 31 H 1.08997 * 109.47086 * 35.00314 * 3 2 1 32 32 H 1.08999 * 109.47226 * 155.00511 * 3 2 1 33 33 H 0.97007 * 120.00120 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.84482 * 350.06182 * 16 15 12 35 35 H 1.08995 * 109.84887 * 229.07289 * 16 15 12 36 36 H 1.08997 * 108.51848 * 179.65080 * 17 16 15 37 37 H 1.08998 * 108.52362 * 297.32026 * 17 16 15 38 38 H 1.09003 * 110.24761 * 29.56401 * 18 17 16 39 39 H 1.08998 * 110.24760 * 151.46766 * 18 17 16 40 40 H 1.07990 * 126.91433 * 359.97438 * 22 21 19 41 41 H 1.07990 * 126.74956 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.35911 * 81.34018 * 26 19 18 43 43 H 1.09001 * 109.36099 * 201.06410 * 26 19 18 44 44 H 1.09002 * 108.16218 * 149.87144 * 27 15 12 45 45 H 1.09005 * 107.99625 * 33.18298 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9282 1.1940 -2.2332 6 6 2.9996 2.9510 -1.6664 7 7 3.5023 3.6476 -0.6705 8 14 3.1774 3.5674 -3.4207 9 1 1.8308 3.7728 -4.0121 10 1 3.9199 4.8534 -3.4207 11 1 3.9232 2.5657 -4.2241 12 16 2.2931 -1.4341 -0.0006 13 8 3.5760 -1.1564 -0.5450 14 8 1.4114 -2.4062 -0.5455 15 7 2.5383 -1.8592 1.5809 16 6 1.5310 -2.7019 2.3094 17 6 2.1282 -4.0205 2.5179 18 6 3.4344 -4.0000 3.3051 19 6 4.5172 -3.8389 2.2778 20 1 4.1471 -4.1790 1.3106 21 7 5.6732 -4.6514 2.6644 22 6 6.0937 -4.8803 3.9300 23 6 7.1850 -5.6744 3.8268 24 7 7.3758 -5.8900 2.5205 25 7 6.4599 -5.2751 1.8589 26 6 4.9513 -2.3570 2.1635 27 6 3.7162 -1.4290 2.2770 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6501 2.0043 0.5895 32 1 3.1857 1.1178 0.4342 33 1 3.9657 4.4813 -0.8471 34 1 0.6252 -2.7964 1.7106 35 1 1.2940 -2.2468 3.2710 36 1 1.4117 -4.6445 3.0520 37 1 2.3203 -4.4714 1.5443 38 1 3.4439 -3.1588 3.9983 39 1 3.5625 -4.9365 3.8478 40 1 5.6488 -4.5044 4.8393 41 1 7.7838 -6.0584 4.6394 42 1 5.6534 -2.1234 2.9639 43 1 5.4349 -2.1954 1.2002 44 1 3.4671 -1.3226 3.3328 45 1 3.9933 -0.4465 1.8949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907354830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:02 Heat of formation + Delta-G solvation = 11.549123 kcal Electronic energy + Delta-G solvation = -29615.912383 eV Core-core repulsion = 25604.092976 eV Total energy + Delta-G solvation = -4011.819407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.23878 -40.18614 -38.37910 -37.21681 -36.84580 -36.15346 -34.52065 -33.88661 -32.44556 -31.90530 -29.67361 -27.60013 -26.79053 -26.55509 -24.21398 -23.73920 -23.46023 -22.45680 -21.19705 -19.83916 -19.11835 -18.57201 -18.32643 -18.16623 -17.47282 -17.14366 -16.69429 -16.21273 -15.99290 -15.79409 -15.41073 -15.15810 -15.06652 -14.80433 -14.61746 -14.11109 -13.92908 -13.91548 -13.68931 -13.43396 -13.33085 -13.14059 -13.06126 -12.96132 -12.77883 -12.63118 -12.49633 -12.48114 -12.41328 -12.18070 -11.98918 -11.79984 -11.78508 -11.70084 -11.53999 -11.02265 -10.61946 -10.30996 -10.14901 -9.76718 -8.23138 -6.34424 -0.38703 0.70236 1.36316 1.39922 1.42965 1.46677 1.66489 2.01011 2.37068 2.53776 3.07802 3.24702 3.34814 3.48570 3.67257 3.71420 3.81475 3.97926 4.08461 4.12001 4.20641 4.23626 4.35042 4.44562 4.53328 4.60597 4.72182 4.77675 4.79502 4.82933 4.85462 4.94498 5.04191 5.07825 5.12397 5.17135 5.18065 5.30742 5.33488 5.44739 5.63220 5.70183 5.70974 5.96045 6.09276 6.73039 7.34312 7.56685 8.83737 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.003402 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.827371 B = 8228.367478 C = 9152.297575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.004 6.004 3 C 0.275 3.725 4 C -0.553 4.553 5 H 0.047 0.953 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.950 3.050 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.281 1.281 12 S 2.784 3.216 13 O -1.010 7.010 14 O -1.008 7.008 15 N -1.001 6.001 16 C 0.118 3.882 17 C -0.141 4.141 18 C -0.117 4.117 19 C 0.144 3.856 20 H 0.080 0.920 21 N -0.284 5.284 22 C -0.029 4.029 23 C -0.067 4.067 24 N -0.318 5.318 25 N -0.147 5.147 26 C -0.146 4.146 27 C 0.129 3.871 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.268 0.732 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.043 0.957 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.239 0.761 41 H 0.220 0.780 42 H 0.109 0.891 43 H 0.044 0.956 44 H 0.130 0.870 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -13.799 19.130 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.846 5.846 3 C 0.151 3.849 4 C -0.593 4.593 5 H 0.065 0.935 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.775 3.225 9 H -0.188 1.188 10 H -0.199 1.199 11 H -0.207 1.207 12 S 2.794 3.206 13 O -0.994 6.994 14 O -0.992 6.992 15 N -0.842 5.842 16 C -0.004 4.004 17 C -0.181 4.181 18 C -0.155 4.155 19 C 0.043 3.957 20 H 0.099 0.901 21 N -0.077 5.077 22 C -0.180 4.180 23 C -0.225 4.225 24 N -0.182 5.182 25 N -0.125 5.125 26 C -0.187 4.187 27 C 0.002 3.998 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.062 0.938 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.256 0.744 41 H 0.237 0.763 42 H 0.127 0.873 43 H 0.063 0.937 44 H 0.148 0.852 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.227 -14.425 16.870 22.595 hybrid contribution 0.263 1.083 -0.432 1.195 sum -3.964 -13.342 16.438 21.539 Atomic orbital electron populations 1.21585 0.78070 1.03302 1.02806 1.57569 1.15765 1.21939 1.89304 1.18586 0.90405 0.80329 0.95562 1.21815 1.36412 1.06641 0.94383 0.93513 1.25668 0.94801 0.96750 1.01186 1.69974 1.37689 1.15712 1.32588 0.85738 0.78862 0.77641 0.80295 1.18758 1.19875 1.20689 1.01669 0.72300 0.72499 0.74146 1.93571 1.42827 1.85437 1.77562 1.93486 1.67548 1.60368 1.77792 1.58187 1.28848 1.65838 1.31353 1.21266 0.89895 0.89908 0.99305 1.20794 0.98220 0.98402 1.00637 1.21611 0.91014 1.06269 0.96644 1.22213 0.82309 0.89729 1.01429 0.90134 1.48126 1.21655 1.32056 1.05910 1.24397 0.99401 1.03685 0.90562 1.24324 1.00088 1.03197 0.94881 1.75057 1.17492 1.19138 1.06509 1.78364 1.01886 1.11067 1.21223 1.23153 0.99667 0.92264 1.03626 1.20775 0.83170 0.95246 1.00643 0.90172 0.91466 0.90963 0.95135 0.96418 0.92310 0.89049 0.85872 0.86580 0.93825 0.85806 0.87875 0.74428 0.76308 0.87291 0.93741 0.85199 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.74 10.68 127.77 1.36 4.10 16 2 N -1.00 -39.84 3.23 -543.23 -1.75 -41.60 16 3 C 0.27 13.53 5.08 85.63 0.43 13.96 16 4 C -0.55 -31.32 9.38 25.60 0.24 -31.08 16 5 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 6 C 0.02 0.90 5.46 84.65 0.46 1.36 16 7 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 8 Si 0.95 44.79 29.54 68.60 2.03 46.81 16 9 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 S 2.78 106.15 6.00 -56.49 -0.34 105.81 16 13 O -1.01 -49.02 16.23 -128.00 -2.08 -51.10 16 14 O -1.01 -39.73 15.55 -128.00 -1.99 -41.72 16 15 N -1.00 -24.47 2.94 -521.22 -1.53 -26.00 16 16 C 0.12 1.69 5.93 83.58 0.50 2.19 16 17 C -0.14 -1.72 5.20 28.36 0.15 -1.57 16 18 C -0.12 -1.13 4.74 29.51 0.14 -0.99 16 19 C 0.14 2.89 2.89 44.70 0.13 3.02 16 20 H 0.08 2.12 6.82 -2.39 -0.02 2.11 16 21 N -0.28 -6.34 3.20 -328.61 -1.05 -7.39 16 22 C -0.03 -0.41 10.24 83.49 0.86 0.44 16 23 C -0.07 -1.23 12.05 83.73 1.01 -0.22 16 24 N -0.32 -9.37 12.41 -58.26 -0.72 -10.09 16 25 N -0.15 -4.65 13.16 37.02 0.49 -4.16 16 26 C -0.15 -3.31 6.03 31.87 0.19 -3.12 16 27 C 0.13 2.80 4.75 87.60 0.42 3.22 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 30 H 0.07 2.13 7.02 -2.39 -0.02 2.12 16 31 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 32 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 33 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 34 H 0.09 1.44 7.30 -2.39 -0.02 1.42 16 35 H 0.12 0.78 8.12 -2.39 -0.02 0.76 16 36 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.04 0.82 6.92 -2.39 -0.02 0.80 16 38 H 0.12 0.47 6.29 -2.39 -0.01 0.46 16 39 H 0.10 0.66 7.26 -2.39 -0.02 0.65 16 40 H 0.24 0.66 7.90 -2.92 -0.02 0.64 16 41 H 0.22 2.18 8.06 -2.92 -0.02 2.16 16 42 H 0.11 1.90 8.13 -2.39 -0.02 1.88 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 44 H 0.13 1.46 6.89 -2.39 -0.02 1.44 16 45 H 0.06 1.60 7.37 -2.38 -0.02 1.58 16 Total: -1.00 -85.67 371.29 0.21 -85.46 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.99 Total: 5.57 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.89 Total: -8.68 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -4.29 Total: -142.15 kcal Atomic # 8 Polarization: -88.75 SS G_CDS: -4.07 Total: -92.82 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 106.15 SS G_CDS: -0.34 Total: 105.81 kcal Total: -85.67 0.21 -85.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907354830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.007 kcal (2) G-P(sol) polarization free energy of solvation -85.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds