Wall clock time and date at job start Wed Apr 1 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00165 * 2 1 4 4 C 1.53003 * 109.47237 * 71.48048 * 3 2 1 5 5 N 1.46493 * 109.46813 * 180.02562 * 4 3 2 6 6 C 1.34785 * 119.99907 * 180.02562 * 5 4 3 7 7 O 1.21587 * 119.99701 * 0.02562 * 6 5 4 8 8 N 1.34769 * 119.99987 * 179.97438 * 6 5 4 9 9 C 1.39946 * 119.99838 * 174.95554 * 8 6 5 10 10 C 1.38958 * 120.03497 * 332.51732 * 9 8 6 11 11 C 1.38165 * 120.06446 * 180.02562 * 10 9 8 12 12 C 1.38164 * 120.13827 * 359.72280 * 11 10 9 13 13 C 1.38907 * 120.06922 * 0.55469 * 12 11 10 14 14 O 1.35753 * 120.03325 * 179.72169 * 13 12 11 15 15 C 1.34827 * 117.00400 * 174.15283 * 14 13 12 16 16 H 1.08008 * 119.99237 * 5.05568 * 15 14 13 17 17 C 1.38647 * 120.00243 * 185.05319 * 15 14 13 18 18 N 1.31552 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99681 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46981 * 60.00618 * 19 17 15 21 21 H 1.48500 * 109.46755 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47266 * 300.00114 * 19 17 15 23 23 C 1.38709 * 120.03538 * 152.53819 * 9 8 6 24 24 C 1.46893 * 111.00102 * 236.04130 * 2 1 3 25 25 C 1.53005 * 109.47351 * 202.77807 * 24 2 1 26 26 F 1.39904 * 109.46677 * 303.52381 * 25 24 2 27 27 F 1.39901 * 109.46865 * 63.51841 * 25 24 2 28 28 H 1.09011 * 109.46658 * 64.87701 * 1 2 3 29 29 H 1.09001 * 109.47379 * 184.87558 * 1 2 3 30 30 H 1.08997 * 109.47416 * 304.87781 * 1 2 3 31 31 H 1.09004 * 109.46593 * 311.48510 * 3 2 1 32 32 H 1.08997 * 109.46865 * 191.48251 * 3 2 1 33 33 H 1.08998 * 109.46785 * 59.99973 * 4 3 2 34 34 H 1.09000 * 109.47124 * 300.00361 * 4 3 2 35 35 H 0.96998 * 120.00402 * 359.97438 * 5 4 3 36 36 H 0.96997 * 120.00223 * 354.96322 * 8 6 5 37 37 H 1.07994 * 119.96981 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.92564 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.96450 * 180.27956 * 12 11 10 40 40 H 0.97005 * 120.00379 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.06970 * 359.97438 * 23 9 8 42 42 H 1.09001 * 109.47425 * 322.77772 * 24 2 1 43 43 H 1.09001 * 109.47217 * 82.77901 * 24 2 1 44 44 H 1.09000 * 109.47226 * 183.52071 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7505 2.0118 1.3678 5 7 2.2751 3.3796 1.3675 6 6 2.1709 4.1416 2.4744 7 8 1.6419 3.6934 3.4733 8 7 2.6538 5.3998 2.4743 9 6 2.4527 6.2265 3.5854 10 6 1.3474 6.0334 4.4051 11 6 1.1479 6.8496 5.5019 12 6 2.0491 7.8563 5.7905 13 6 3.1529 8.0581 4.9716 14 8 4.0349 9.0511 5.2527 15 6 5.1458 9.1167 4.4915 16 1 5.2633 8.4508 3.6493 17 6 6.1372 10.0389 4.7899 18 7 5.9942 10.8496 5.8160 19 14 7.6767 10.1292 3.7356 20 1 7.2995 10.4484 2.3353 21 1 8.5747 11.1889 4.2608 22 1 8.3797 8.8217 3.7732 23 6 3.3562 7.2400 3.8693 24 6 1.9954 -0.7660 -1.1375 25 6 3.4199 -1.2290 -0.8251 26 9 4.2144 -0.1189 -0.5188 27 9 3.3973 -2.1021 0.2678 28 1 -0.3633 0.4364 -0.9306 29 1 -0.3634 -1.0239 0.0873 30 1 -0.3634 0.5876 0.8430 31 1 1.4901 1.9546 -0.7699 32 1 3.0659 1.3497 -0.2046 33 1 2.2558 1.4286 2.1377 34 1 0.6801 2.0335 1.5724 35 1 2.6980 3.7368 0.5710 36 1 3.1408 5.7323 1.7042 37 1 0.6436 5.2445 4.1847 38 1 0.2883 6.6972 6.1377 39 1 1.8928 8.4898 6.6511 40 1 6.6880 11.4945 6.0250 41 1 4.2161 7.3921 3.2339 42 1 1.3617 -1.6350 -1.3149 43 1 2.0051 -0.1357 -2.0267 44 1 3.8333 -1.7434 -1.6926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929742405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:31 Heat of formation + Delta-G solvation = -111.913335 kcal Electronic energy + Delta-G solvation = -28977.158150 eV Core-core repulsion = 24373.851870 eV Total energy + Delta-G solvation = -4603.306279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.30310 -47.30625 -40.37582 -38.81562 -38.21711 -36.52142 -34.75474 -34.17622 -32.19730 -30.95622 -29.59880 -28.93580 -28.11788 -25.79736 -25.23557 -23.36994 -22.02353 -21.76004 -21.63520 -20.37931 -18.60005 -18.06859 -17.80765 -17.71369 -17.28684 -17.02163 -16.24190 -15.82282 -15.42382 -15.28195 -14.91458 -14.87249 -14.47550 -14.37192 -14.21813 -13.91898 -13.75790 -13.68335 -13.63212 -13.46556 -12.92445 -12.91295 -12.78329 -12.37513 -12.27335 -12.05430 -11.84794 -11.67813 -11.53884 -11.14602 -10.99843 -10.90262 -10.74648 -10.44743 -9.97428 -9.58677 -9.40144 -9.14216 -9.02451 -8.76207 -7.62628 -7.06546 -6.40842 -4.00606 2.12321 2.45491 2.54998 3.13230 3.15444 3.17976 3.21017 3.35892 3.44329 3.78329 3.97986 3.98936 4.25060 4.41939 4.45958 4.63512 4.67885 4.79907 4.83750 4.97048 5.02323 5.12836 5.16758 5.35718 5.43201 5.60226 5.68002 5.77505 6.06988 6.14347 6.22884 6.28672 6.30291 6.32233 6.45699 6.60047 6.84922 7.06071 7.16205 7.32058 7.40835 7.48935 7.89416 8.03048 8.06422 8.65458 9.04497 9.75806 10.77276 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.002066 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.886555 B =13548.754053 C =15129.092596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.533 5.533 3 C 0.023 3.977 4 C 0.146 3.854 5 N -0.747 5.747 6 C 0.704 3.296 7 O -0.567 6.567 8 N -0.680 5.680 9 C 0.200 3.800 10 C -0.212 4.212 11 C -0.062 4.062 12 C -0.204 4.204 13 C 0.170 3.830 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.089 0.911 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.271 1.271 23 C -0.262 4.262 24 C 0.002 3.998 25 C 0.270 3.730 26 F -0.201 7.201 27 F -0.197 7.197 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.402 0.598 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.270 0.730 41 H 0.129 0.871 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.137 -22.514 -19.184 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.258 5.258 3 C -0.105 4.105 4 C 0.021 3.979 5 N -0.404 5.404 6 C 0.404 3.596 7 O -0.443 6.443 8 N -0.326 5.326 9 C 0.106 3.894 10 C -0.233 4.233 11 C -0.081 4.081 12 C -0.224 4.224 13 C 0.116 3.884 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.107 0.893 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.284 4.284 24 C -0.127 4.127 25 C 0.215 3.785 26 F -0.182 7.182 27 F -0.178 7.178 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.237 0.763 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.147 0.853 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.340 -22.836 -17.547 29.982 hybrid contribution 1.095 0.729 -2.065 2.449 sum -7.245 -22.107 -19.612 30.427 Atomic orbital electron populations 1.22537 0.85903 1.02975 1.01331 1.61698 1.08974 1.13673 1.41413 1.22738 1.02927 0.87981 0.96812 1.21006 0.99394 0.80532 0.96926 1.44980 1.65783 1.15078 1.14545 1.15837 0.79741 0.80541 0.83438 1.90932 1.48749 1.72451 1.32184 1.42587 1.58654 1.11875 1.19464 1.17222 0.94042 0.90578 0.87542 1.20746 0.99275 1.04082 0.99169 1.20549 0.97602 0.93851 0.96096 1.20239 0.96790 1.02979 1.02434 1.19032 0.90393 0.87352 0.91605 1.84006 1.28366 1.41736 1.53967 1.21216 0.94339 1.20857 1.10388 0.89337 1.25259 0.98620 0.95553 0.97064 1.70026 1.34205 1.19584 1.26043 0.85809 0.80098 0.78416 0.79232 1.19615 1.20306 1.19578 1.20716 1.02405 1.02207 1.03101 1.23253 0.95128 1.00661 0.93690 1.21985 0.90880 0.78526 0.87088 1.92882 1.76160 1.54639 1.94559 1.93015 1.97130 1.69333 1.58305 0.95142 0.90813 0.90248 0.93851 0.87880 0.90560 0.91631 0.77203 0.76331 0.85415 0.86683 0.86468 0.92027 0.85347 0.87589 0.91214 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.32 60.06 0.56 0.67 16 2 N -0.53 -3.66 4.60 -242.91 -1.12 -4.78 16 3 C 0.02 0.17 4.79 -3.82 -0.02 0.15 16 4 C 0.15 1.49 5.72 -4.04 -0.02 1.46 16 5 N -0.75 -8.13 5.56 -65.23 -0.36 -8.49 16 6 C 0.70 11.00 8.35 -86.92 -0.73 10.28 16 7 O -0.57 -11.11 13.64 5.29 0.07 -11.04 16 8 N -0.68 -10.62 5.37 -14.24 -0.08 -10.69 16 9 C 0.20 3.96 6.38 -83.71 -0.53 3.43 16 10 C -0.21 -4.25 8.69 -39.34 -0.34 -4.59 16 11 C -0.06 -1.22 10.03 -39.64 -0.40 -1.61 16 12 C -0.20 -4.52 9.99 -39.36 -0.39 -4.91 16 13 C 0.17 4.21 6.64 -39.14 -0.26 3.95 16 14 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 15 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 16 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 19 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.26 -5.79 9.06 -39.21 -0.36 -6.15 16 24 C 0.00 0.01 5.41 -3.83 -0.02 -0.01 16 25 C 0.27 1.45 5.61 37.16 0.21 1.66 16 26 F -0.20 -1.62 14.41 2.25 0.03 -1.59 16 27 F -0.20 -1.72 17.30 2.25 0.04 -1.68 16 28 H 0.03 0.14 8.14 -51.92 -0.42 -0.28 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.08 0.51 6.51 -51.93 -0.34 0.17 16 31 H 0.04 0.26 8.06 -51.93 -0.42 -0.16 16 32 H 0.10 0.78 5.20 -51.93 -0.27 0.51 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.70 6.66 -51.93 -0.35 0.36 16 35 H 0.39 3.05 8.49 -40.82 -0.35 2.70 16 36 H 0.40 4.88 8.81 -40.82 -0.36 4.52 16 37 H 0.13 2.55 5.96 -52.49 -0.31 2.24 16 38 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 42 H 0.11 0.28 7.85 -51.93 -0.41 -0.13 16 43 H 0.07 0.19 7.95 -51.93 -0.41 -0.22 16 44 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -36.02 373.42 -7.60 -43.62 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.45 Total: 8.72 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.11 Total: -5.36 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.80 Total: -48.68 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.07 Total: -16.14 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.07 Total: -3.27 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.02 -7.60 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929742405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.293 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds