Wall clock time and date at job start Wed Apr 1 2020 02:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.88421 * 2 1 4 4 C 1.54913 * 111.03350 * 123.90064 * 2 1 3 5 5 N 1.47741 * 104.84060 * 155.18638 * 4 2 1 6 6 C 1.34779 * 125.82179 * 155.82994 * 5 4 2 7 7 O 1.21598 * 120.00439 * 354.61804 * 6 5 4 8 8 C 1.47451 * 119.99877 * 174.61720 * 6 5 4 9 9 C 1.38708 * 120.31547 * 315.69277 * 8 6 5 10 10 C 1.39108 * 120.69382 * 179.97438 * 9 8 6 11 11 F 1.35094 * 119.49585 * 180.02562 * 10 9 8 12 12 C 1.36538 * 121.00330 * 0.02562 * 10 9 8 13 13 C 1.40416 * 120.07210 * 359.97438 * 12 10 9 14 14 C 1.40806 * 121.24395 * 179.97438 * 13 12 10 15 15 C 1.36624 * 118.16064 * 179.97438 * 14 13 12 16 16 C 1.39235 * 119.90836 * 359.97438 * 15 14 13 17 17 N 1.31224 * 121.69552 * 0.03128 * 16 15 14 18 18 C 1.33369 * 121.35775 * 359.65378 * 17 16 15 19 19 C 1.47025 * 108.53069 * 335.74587 * 5 4 2 20 20 C 1.54322 * 107.39927 * 1.18661 * 19 5 4 21 21 H 1.08997 * 110.72222 * 140.47975 * 20 19 5 22 22 N 1.46498 * 110.71707 * 263.75033 * 20 19 5 23 23 C 1.36940 * 120.00156 * 273.54328 * 22 20 19 24 24 H 1.07998 * 119.99917 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00076 * 180.02562 * 23 22 20 26 26 N 1.31614 * 120.00106 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99736 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.46904 * 90.00435 * 27 25 23 29 29 H 1.48503 * 109.46812 * 210.00008 * 27 25 23 30 30 H 1.48493 * 109.47277 * 330.00303 * 27 25 23 31 31 H 1.09004 * 109.47246 * 183.88050 * 1 2 3 32 32 H 1.08998 * 109.47574 * 303.88876 * 1 2 3 33 33 H 1.09001 * 109.46622 * 63.88919 * 1 2 3 34 34 H 1.09008 * 110.36634 * 273.93803 * 4 2 1 35 35 H 1.08998 * 110.37071 * 36.25816 * 4 2 1 36 36 H 1.07990 * 119.65453 * 359.95067 * 9 8 6 37 37 H 1.07996 * 119.96729 * 179.97438 * 12 10 9 38 38 H 1.08007 * 120.92259 * 0.02562 * 14 13 12 39 39 H 1.08003 * 120.04711 * 180.02562 * 15 14 13 40 40 H 1.07998 * 119.15416 * 180.02562 * 16 15 14 41 41 H 1.08997 * 109.88252 * 241.68970 * 19 5 4 42 42 H 1.09002 * 109.88065 * 120.67672 * 19 5 4 43 43 H 0.97001 * 120.00440 * 93.54604 * 22 20 19 44 44 H 0.97001 * 119.99905 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0860 -0.8065 1.2001 5 7 3.4317 -1.2414 0.7728 6 6 4.4551 -1.5581 1.5907 7 8 4.3436 -1.4041 2.7918 8 6 5.7098 -2.0915 1.0292 9 6 5.6769 -3.0691 0.0458 10 6 6.8558 -3.5774 -0.4899 11 9 6.7955 -4.5289 -1.4471 12 6 8.0729 -3.1294 -0.0629 13 6 8.1495 -2.1404 0.9309 14 6 9.3913 -1.6608 1.3898 15 6 9.3924 -0.6975 2.3586 16 6 8.1861 -0.2183 2.8625 17 7 7.0313 -0.6686 2.4315 18 6 6.9613 -1.6039 1.4833 19 6 3.4679 -1.2732 -0.6966 20 6 2.0862 -0.8076 -1.2024 21 1 2.1916 -0.1695 -2.0798 22 7 1.2274 -1.9575 -1.4962 23 6 1.2820 -2.5563 -2.7265 24 1 1.9585 -2.1811 -3.4801 25 6 0.4679 -3.6456 -3.0050 26 7 -0.3569 -4.1025 -2.0868 27 14 0.5429 -4.4628 -4.6831 28 1 1.5605 -5.5443 -4.6619 29 1 -0.7853 -5.0393 -5.0127 30 1 0.9133 -3.4547 -5.7085 31 1 -0.3634 -1.0253 0.0696 32 1 -0.3634 0.5730 0.8530 33 1 -0.3632 0.4523 -0.9228 34 1 2.1566 -0.1718 2.0836 35 1 1.4531 -1.6705 1.4024 36 1 4.7261 -3.4399 -0.3075 37 1 8.9776 -3.5360 -0.4901 38 1 10.3174 -2.0433 0.9866 39 1 10.3276 -0.3076 2.7325 40 1 8.2011 0.5436 3.6278 41 1 3.6659 -2.2883 -1.0407 42 1 4.2429 -0.5999 -1.0630 43 1 0.6200 -2.2948 -0.8192 44 1 -0.9261 -4.8635 -2.2815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939246245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:20 Heat of formation + Delta-G solvation = 2.999874 kcal Electronic energy + Delta-G solvation = -29938.322293 eV Core-core repulsion = 25770.768250 eV Total energy + Delta-G solvation = -4167.554044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.06507 -41.16426 -39.62683 -37.58469 -36.81300 -33.95457 -33.73736 -32.42421 -30.78627 -30.44928 -30.11408 -27.74843 -26.37195 -24.87918 -23.90866 -23.74667 -23.24449 -21.84216 -19.56216 -19.27368 -18.84314 -17.72642 -17.62183 -17.23201 -16.46321 -15.88850 -15.81915 -15.49378 -15.39874 -14.84749 -14.59882 -14.44890 -14.19153 -14.13737 -13.74187 -13.48622 -13.35572 -13.08081 -12.91569 -12.59034 -12.54183 -12.11692 -11.92769 -11.81118 -11.57156 -11.41281 -11.13330 -10.95066 -10.85728 -10.72771 -10.44420 -10.27141 -9.98778 -9.88469 -9.67128 -9.46524 -9.05020 -8.97335 -8.49967 -8.20905 -7.09076 -5.85932 -3.16158 -0.11337 0.46960 1.51865 2.40362 3.02614 3.22269 3.38860 3.44664 3.46028 3.81200 3.92652 4.05740 4.23599 4.42125 4.51320 4.58253 4.61434 4.70292 4.90425 4.95644 5.16858 5.18860 5.32020 5.36305 5.42053 5.51339 5.62252 5.66368 5.69549 5.73741 5.78859 5.88634 5.95082 5.97346 6.17862 6.19194 6.25837 6.34520 6.36637 6.48794 6.52333 6.63589 6.73390 6.92505 7.62498 7.71603 7.85177 8.31895 8.41823 9.44168 9.98451 10.33562 11.36016 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003716 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.495079 B = 7533.852051 C = 9368.857131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.604 5.604 6 C 0.578 3.422 7 O -0.520 6.520 8 C -0.062 4.062 9 C -0.098 4.098 10 C 0.110 3.890 11 F -0.128 7.128 12 C -0.123 4.123 13 C -0.085 4.085 14 C -0.058 4.058 15 C -0.169 4.169 16 C 0.130 3.870 17 N -0.447 5.447 18 C 0.149 3.851 19 C 0.065 3.935 20 C 0.173 3.827 21 H 0.071 0.929 22 N -0.712 5.712 23 C -0.248 4.248 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.928 5.928 27 Si 0.905 3.095 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.160 0.840 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.387 0.613 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.395 7.361 6.428 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.365 3.635 7 O -0.396 6.396 8 C -0.065 4.065 9 C -0.119 4.119 10 C 0.090 3.910 11 F -0.107 7.107 12 C -0.143 4.143 13 C -0.087 4.087 14 C -0.084 4.084 15 C -0.189 4.189 16 C -0.042 4.042 17 N -0.153 5.153 18 C 0.026 3.974 19 C -0.061 4.061 20 C 0.061 3.939 21 H 0.088 0.912 22 N -0.353 5.353 23 C -0.379 4.379 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.576 5.576 27 Si 0.736 3.264 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.178 0.822 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.179 0.821 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.223 0.777 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.503 7.581 7.187 20.383 hybrid contribution 0.786 -1.302 -1.349 2.033 sum 18.289 6.279 5.838 20.199 Atomic orbital electron populations 1.21542 0.93286 1.02987 1.01017 1.22614 0.96968 0.98526 0.95267 0.90273 1.22341 0.82177 0.98482 0.97462 1.48394 1.11762 1.65796 1.07725 1.17314 0.81872 0.78504 0.85814 1.90788 1.81552 1.53169 1.14099 1.19668 0.92930 0.97523 0.96428 1.21721 0.99317 0.96254 0.94592 1.17168 0.93826 0.90062 0.89912 1.91574 1.97230 1.61133 1.60750 1.21006 0.97394 0.97973 0.97962 1.18455 0.94222 0.97960 0.98076 1.21414 0.96638 0.95121 0.95259 1.21949 1.00173 0.98460 0.98323 1.23108 0.87178 0.96865 0.97094 1.68118 1.28566 1.09480 1.09161 1.18551 0.91180 0.94005 0.93636 1.23454 1.01754 1.02211 0.78646 1.21189 0.88149 0.89868 0.94710 0.91156 1.42462 1.45431 1.32710 1.14718 1.19220 1.18624 1.09450 0.90585 0.91005 1.24736 0.98869 0.98857 0.97879 1.69651 1.27213 1.27474 1.33218 0.86226 0.76920 0.79491 0.83746 1.21626 1.21767 1.20676 0.91179 0.93609 0.92079 0.91002 0.91007 0.82224 0.83609 0.83978 0.84203 0.82130 0.90307 0.92804 0.77678 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.85 37.16 0.33 -1.70 16 2 C -0.11 -1.79 3.51 -88.47 -0.31 -2.10 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.12 1.97 6.40 -2.35 -0.02 1.96 16 5 N -0.60 -10.62 3.34 -171.51 -0.57 -11.19 16 6 C 0.58 10.73 7.18 -12.51 -0.09 10.64 16 7 O -0.52 -11.02 16.60 5.28 0.09 -10.93 16 8 C -0.06 -1.00 5.42 -104.62 -0.57 -1.57 16 9 C -0.10 -1.46 8.37 -39.08 -0.33 -1.79 16 10 C 0.11 1.44 7.22 -39.87 -0.29 1.15 16 11 F -0.13 -1.78 17.24 2.25 0.04 -1.74 16 12 C -0.12 -1.34 9.71 -39.38 -0.38 -1.72 16 13 C -0.08 -0.99 5.74 -106.83 -0.61 -1.60 16 14 C -0.06 -0.49 9.89 -39.19 -0.39 -0.88 16 15 C -0.17 -1.31 10.03 -39.79 -0.40 -1.71 16 16 C 0.13 1.36 11.15 -17.44 -0.19 1.16 16 17 N -0.45 -6.69 9.25 -10.76 -0.10 -6.79 16 18 C 0.15 2.23 6.59 -84.57 -0.56 1.67 16 19 C 0.07 1.12 5.63 -3.06 -0.02 1.10 16 20 C 0.17 3.15 3.37 -66.10 -0.22 2.93 16 21 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 22 N -0.71 -16.21 4.61 -51.65 -0.24 -16.45 16 23 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 27 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 30 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 31 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.17 8.00 -51.92 -0.42 0.75 16 35 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 36 H 0.16 2.53 6.09 -52.49 -0.32 2.21 16 37 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 41 H 0.08 1.46 5.62 -51.93 -0.29 1.17 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.39 9.47 6.10 -40.82 -0.25 9.22 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -32.34 368.74 -9.19 -41.52 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.37 Total: 8.76 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -4.29 Total: 0.76 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.19 Total: -60.40 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.34 -9.19 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939246245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.524 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds