Wall clock time and date at job start Wed Apr 1 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.87946 * 2 1 4 4 C 1.55128 * 110.90734 * 124.09613 * 2 1 3 5 5 N 1.47428 * 104.72035 * 155.27487 * 4 2 1 6 6 C 1.34775 * 125.64331 * 155.81803 * 5 4 2 7 7 O 1.21565 * 120.00316 * 4.75978 * 6 5 4 8 8 C 1.47765 * 119.99631 * 184.76097 * 6 5 4 9 9 C 1.40598 * 120.26676 * 172.19520 * 8 6 5 10 10 N 1.30798 * 121.54069 * 179.97438 * 9 8 6 11 11 C 1.33826 * 121.72477 * 359.77276 * 10 9 8 12 12 C 1.40540 * 120.78722 * 179.72509 * 11 10 9 13 13 C 1.36099 * 119.84874 * 180.24848 * 12 11 10 14 14 C 1.39563 * 121.05588 * 0.25743 * 13 12 11 15 15 F 1.35101 * 119.60644 * 179.97438 * 14 13 12 16 16 C 1.36341 * 120.78226 * 359.97438 * 14 13 12 17 17 C 1.40509 * 119.60693 * 0.02562 * 16 14 13 18 18 C 1.39005 * 120.27135 * 352.17509 * 8 6 5 19 19 C 1.47022 * 108.70474 * 335.55666 * 5 4 2 20 20 C 1.54329 * 107.26966 * 1.28445 * 19 5 4 21 21 H 1.08999 * 110.71943 * 263.82621 * 20 19 5 22 22 N 1.46497 * 110.71765 * 140.55866 * 20 19 5 23 23 C 1.36935 * 120.00343 * 86.45182 * 22 20 19 24 24 H 1.08000 * 119.99744 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00073 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00528 * 0.02562 * 25 23 22 27 27 Si 1.86810 * 119.99870 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46844 * 89.99983 * 27 25 23 29 29 H 1.48498 * 109.47062 * 209.99876 * 27 25 23 30 30 H 1.48500 * 109.47148 * 330.00493 * 27 25 23 31 31 H 1.09007 * 109.46418 * 183.87392 * 1 2 3 32 32 H 1.08990 * 109.47418 * 303.87690 * 1 2 3 33 33 H 1.08998 * 109.46861 * 63.88271 * 1 2 3 34 34 H 1.08999 * 110.49629 * 36.43861 * 4 2 1 35 35 H 1.08995 * 110.34047 * 274.04388 * 4 2 1 36 36 H 1.07999 * 119.23392 * 359.97438 * 9 8 6 37 37 H 1.07998 * 120.07790 * 0.52055 * 12 11 10 38 38 H 1.07991 * 119.47101 * 180.27047 * 13 12 11 39 39 H 1.08000 * 120.19942 * 180.02562 * 16 14 13 40 40 H 1.08001 * 121.01430 * 0.03780 * 18 8 6 41 41 H 1.09002 * 109.88216 * 120.69884 * 19 5 4 42 42 H 1.09000 * 109.88071 * 241.86592 * 19 5 4 43 43 H 0.97003 * 120.00259 * 266.44897 * 22 20 19 44 44 H 0.96991 * 120.00516 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0837 -0.8124 1.2000 5 7 3.4272 -1.2433 0.7728 6 6 4.4477 -1.5621 1.5934 7 8 4.2746 -1.5898 2.7963 8 6 5.7771 -1.8781 1.0308 9 6 6.8836 -2.0505 1.8809 10 7 8.0711 -2.3311 1.4099 11 6 8.2923 -2.4726 0.0976 12 6 9.5777 -2.7686 -0.3874 13 6 9.7821 -2.9033 -1.7262 14 6 8.7336 -2.7470 -2.6339 15 9 8.9696 -2.8867 -3.9568 16 6 7.4740 -2.4549 -2.2015 17 6 7.2287 -2.3091 -0.8257 18 6 5.9437 -2.0076 -0.3431 19 6 3.4676 -1.2737 -0.6966 20 6 2.0862 -0.8073 -1.2026 21 1 1.4469 -1.6625 -1.4217 22 7 2.2287 0.0506 -2.3815 23 6 2.3034 -0.5077 -3.6296 24 1 2.2578 -1.5805 -3.7449 25 6 2.4379 0.3053 -4.7467 26 7 2.4941 1.6128 -4.6062 27 14 2.5406 -0.4563 -6.4493 28 1 1.1743 -0.5869 -7.0164 29 1 3.3617 0.4117 -7.3312 30 1 3.1673 -1.7992 -6.3539 31 1 -0.3632 -1.0254 0.0694 32 1 -0.3634 0.5728 0.8531 33 1 -0.3633 0.4524 -0.9227 34 1 1.4526 -1.6787 1.3980 35 1 2.1515 -0.1810 2.0859 36 1 6.7499 -1.9490 2.9478 37 1 10.4005 -2.8932 0.3009 38 1 10.7714 -3.1351 -2.0919 39 1 6.6695 -2.3363 -2.9122 40 1 5.1111 -1.8801 -1.0192 41 1 4.2427 -0.5991 -1.0602 42 1 3.6652 -2.2888 -1.0410 43 1 2.2700 1.0142 -2.2780 44 1 2.5884 2.1808 -5.3867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939479100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:22 Heat of formation + Delta-G solvation = 11.907084 kcal Electronic energy + Delta-G solvation = -29568.155697 eV Core-core repulsion = 25400.987899 eV Total energy + Delta-G solvation = -4167.167798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.06857 -41.21927 -39.82493 -37.82428 -36.75607 -34.43852 -33.91571 -32.50298 -31.00441 -30.69240 -29.98121 -27.90188 -26.57122 -25.14081 -24.11573 -23.77701 -22.58316 -21.75183 -20.19266 -20.09509 -18.78344 -17.90360 -17.25894 -17.16974 -16.59930 -16.06587 -15.88408 -15.77586 -15.33630 -14.93442 -14.73735 -14.37762 -14.09918 -13.89070 -13.85568 -13.69110 -13.52568 -13.28088 -13.05903 -12.70343 -12.66254 -12.51183 -12.05471 -11.70019 -11.59856 -11.56796 -11.24175 -11.06680 -10.81127 -10.75740 -10.67936 -10.38431 -10.25239 -10.05980 -9.85780 -9.59500 -9.09046 -9.01267 -8.53420 -8.46891 -7.22621 -5.96687 -3.28821 -0.04372 0.34941 1.59433 2.27888 2.95999 3.09088 3.31654 3.37563 3.39687 3.85742 3.91703 4.01199 4.27490 4.36017 4.42488 4.60008 4.62157 4.66539 4.86237 4.90498 4.97745 5.09912 5.24397 5.38905 5.40967 5.46954 5.50946 5.57169 5.63799 5.70571 5.71679 5.82399 5.84876 5.88338 5.89901 6.01475 6.06699 6.18410 6.24338 6.31007 6.36368 6.49562 6.53190 6.70727 7.50081 7.53525 7.66261 8.12521 8.20262 9.32715 9.84933 10.19712 11.24759 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007538 B = 0.004644 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.696240 B = 6027.375394 C = 9456.253004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.086 0.914 4 C 0.115 3.885 5 N -0.604 5.604 6 C 0.575 3.425 7 O -0.544 6.544 8 C -0.179 4.179 9 C 0.184 3.816 10 N -0.477 5.477 11 C 0.129 3.871 12 C -0.070 4.070 13 C -0.124 4.124 14 C 0.097 3.903 15 F -0.135 7.135 16 C -0.118 4.118 17 C -0.089 4.089 18 C -0.046 4.046 19 C 0.055 3.945 20 C 0.176 3.824 21 H 0.070 0.930 22 N -0.710 5.710 23 C -0.255 4.255 24 H 0.073 0.927 25 C -0.003 4.003 26 N -0.926 5.926 27 Si 0.905 3.095 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.280 1.280 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.173 0.827 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.187 0.813 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.388 0.612 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.995 -7.665 8.976 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.336 5.336 6 C 0.364 3.636 7 O -0.424 6.424 8 C -0.184 4.184 9 C 0.010 3.990 10 N -0.184 5.184 11 C 0.008 3.992 12 C -0.088 4.088 13 C -0.144 4.144 14 C 0.078 3.922 15 F -0.113 7.113 16 C -0.138 4.138 17 C -0.091 4.091 18 C -0.071 4.071 19 C -0.070 4.070 20 C 0.064 3.936 21 H 0.088 0.912 22 N -0.350 5.350 23 C -0.386 4.386 24 H 0.091 0.909 25 C -0.200 4.200 26 N -0.573 5.573 27 Si 0.735 3.265 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.206 1.206 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.190 0.810 37 H 0.165 0.835 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.204 0.796 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.223 0.777 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.760 -7.906 9.900 15.403 hybrid contribution -0.425 0.052 -1.915 1.963 sum 8.334 -7.854 7.984 13.961 Atomic orbital electron populations 1.21615 0.93638 1.01666 1.02244 1.22681 0.96526 0.99800 0.94325 0.89609 1.22376 0.82115 0.98316 0.97963 1.48395 1.12073 1.65346 1.07800 1.17635 0.82934 0.77387 0.85624 1.90761 1.83654 1.53829 1.14123 1.20942 0.95886 1.07081 0.94514 1.23062 0.85836 0.89372 1.00726 1.68052 1.23190 1.13673 1.13474 1.19083 0.93661 0.97362 0.89121 1.20668 0.95520 0.97964 0.94664 1.20969 0.99276 1.01266 0.92907 1.17353 0.94098 1.02754 0.78035 1.91542 1.95153 1.93229 1.31392 1.21142 0.96903 1.00398 0.95345 1.18560 0.94480 1.02398 0.93673 1.23776 0.97974 0.89258 0.96095 1.23877 1.04148 1.00893 0.78122 1.21296 0.91148 0.94112 0.87094 0.91243 1.42371 1.86838 1.05330 1.00480 1.19213 1.43954 0.91934 0.83507 0.90914 1.24760 1.01960 0.95312 0.97991 1.69645 1.55865 1.02332 1.29409 0.86242 0.77661 0.78165 0.84393 1.21492 1.21635 1.20566 0.92754 0.93032 0.91241 0.91195 0.90585 0.81025 0.83523 0.83851 0.83031 0.79643 0.89713 0.91313 0.77743 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.31 37.16 0.35 -1.35 16 2 C -0.11 -1.61 3.26 -88.35 -0.29 -1.90 16 3 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 4 C 0.11 1.55 6.36 -2.41 -0.02 1.53 16 5 N -0.60 -8.90 3.32 -173.08 -0.58 -9.48 16 6 C 0.58 8.96 7.81 -12.37 -0.10 8.87 16 7 O -0.54 -9.60 16.67 5.31 0.09 -9.51 16 8 C -0.18 -2.54 5.88 -104.83 -0.62 -3.16 16 9 C 0.18 2.48 10.73 -17.10 -0.18 2.30 16 10 N -0.48 -6.50 10.30 -10.67 -0.11 -6.61 16 11 C 0.13 1.69 6.61 -84.77 -0.56 1.13 16 12 C -0.07 -0.73 9.97 -39.48 -0.39 -1.12 16 13 C -0.12 -1.21 9.92 -39.86 -0.40 -1.60 16 14 C 0.10 1.15 7.24 -39.77 -0.29 0.86 16 15 F -0.13 -1.70 17.25 2.25 0.04 -1.67 16 16 C -0.12 -1.49 9.73 -39.41 -0.38 -1.87 16 17 C -0.09 -1.19 5.74 -106.82 -0.61 -1.80 16 18 C -0.05 -0.62 8.44 -38.43 -0.32 -0.95 16 19 C 0.06 0.83 4.62 -3.06 -0.01 0.82 16 20 C 0.18 2.93 3.06 -66.10 -0.20 2.73 16 21 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 22 N -0.71 -15.27 5.18 -51.65 -0.27 -15.54 16 23 C -0.26 -6.22 9.98 -15.06 -0.15 -6.37 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 26 N -0.93 -25.74 13.06 55.49 0.72 -25.02 16 27 Si 0.90 20.69 29.55 -169.99 -5.02 15.66 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 31 H 0.05 0.63 8.07 -51.92 -0.42 0.21 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 35 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.17 2.08 7.65 -52.49 -0.40 1.68 16 37 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.19 2.51 2.89 -54.52 -0.16 2.35 16 41 H 0.08 1.39 6.56 -51.93 -0.34 1.05 16 42 H 0.07 0.96 6.79 -51.93 -0.35 0.61 16 43 H 0.39 9.09 7.71 -40.82 -0.31 8.77 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -29.08 369.17 -9.15 -38.23 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.31 Total: 10.44 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -4.27 Total: -2.07 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.23 Total: -56.64 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.08 -9.15 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939479100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.132 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds