Wall clock time and date at job start Wed Apr 1 2020 01:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.52300 * 2 1 4 4 C 1.53191 * 109.51207 * 239.92195 * 2 1 3 5 5 N 1.46919 * 108.76603 * 294.69881 * 4 2 1 6 6 C 1.36943 * 120.63207 * 126.35768 * 5 4 2 7 7 H 1.08000 * 119.99844 * 332.66218 * 6 5 4 8 8 C 1.38805 * 119.99951 * 152.65210 * 6 5 4 9 9 N 1.31623 * 120.00001 * 159.33828 * 8 6 5 10 10 Si 1.86803 * 120.00072 * 339.34155 * 8 6 5 11 11 H 1.48498 * 109.47095 * 92.96858 * 10 8 6 12 12 H 1.48499 * 109.46947 * 212.96266 * 10 8 6 13 13 H 1.48494 * 109.47048 * 332.96198 * 10 8 6 14 14 C 1.46926 * 118.74002 * 306.38282 * 5 4 2 15 15 C 1.53196 * 108.77555 * 53.60739 * 14 5 4 16 16 C 1.53035 * 109.31077 * 305.36826 * 15 14 5 17 17 H 1.09000 * 109.46295 * 301.35565 * 16 15 14 18 18 N 1.46504 * 109.45854 * 181.38254 * 16 15 14 19 19 C 1.34781 * 119.99455 * 84.97246 * 18 16 15 20 20 O 1.21681 * 120.00688 * 359.97438 * 19 18 16 21 21 C 1.46721 * 119.99523 * 179.97438 * 19 18 16 22 22 O 1.35343 * 126.64722 * 359.97438 * 21 19 18 23 23 C 1.33667 * 107.68797 * 180.02562 * 22 21 19 24 24 N 1.30618 * 109.15190 * 359.72722 * 23 22 21 25 25 C 1.33691 * 108.99327 * 0.43859 * 24 23 22 26 26 C 1.50700 * 126.27131 * 179.82508 * 25 24 23 27 27 F 1.39906 * 109.47081 * 29.69607 * 26 25 24 28 28 F 1.39903 * 109.47164 * 149.69471 * 26 25 24 29 29 H 1.08996 * 109.47529 * 299.92647 * 1 2 3 30 30 H 1.08997 * 109.46814 * 59.92110 * 1 2 3 31 31 H 1.08999 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46775 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46762 * 300.07815 * 3 2 1 34 34 H 1.09004 * 109.47055 * 60.07871 * 3 2 1 35 35 H 1.09001 * 109.59898 * 174.90661 * 4 2 1 36 36 H 1.09002 * 109.69713 * 54.54843 * 4 2 1 37 37 H 0.97001 * 119.99947 * 179.97438 * 9 8 6 38 38 H 1.08992 * 109.58685 * 293.82261 * 14 5 4 39 39 H 1.08998 * 109.70247 * 173.46241 * 14 5 4 40 40 H 1.08996 * 109.49772 * 185.41400 * 15 14 5 41 41 H 1.09005 * 109.52015 * 65.33417 * 15 14 5 42 42 H 0.96995 * 120.00255 * 264.97170 * 18 16 15 43 43 H 1.08000 * 125.42322 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.47316 * 269.69652 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4421 0.0000 4 6 2.0417 -0.7237 -1.2495 5 7 1.6517 -2.1379 -1.1696 6 6 0.9632 -2.7308 -2.1942 7 1 0.3295 -2.1353 -2.8347 8 6 1.0801 -4.0970 -2.4098 9 7 0.1538 -4.7374 -3.0911 10 14 2.5521 -5.0268 -1.7328 11 1 2.2156 -5.5816 -0.3971 12 1 2.9036 -6.1362 -2.6552 13 1 3.7071 -4.1019 -1.6081 14 6 2.0138 -2.9039 0.0308 15 6 1.5027 -2.1556 1.2660 16 6 2.0408 -0.7230 1.2484 17 1 3.1305 -0.7445 1.2353 18 7 1.5809 -0.0143 2.4453 19 6 2.2699 -0.1222 3.5986 20 8 3.2736 -0.8085 3.6460 21 6 1.8098 0.5881 4.7972 22 8 0.7191 1.3833 4.8961 23 6 0.6577 1.8341 6.1530 24 7 1.6605 1.3457 6.8328 25 6 2.3983 0.5752 6.0270 26 6 3.6480 -0.1751 6.4095 27 9 3.5858 -0.5255 7.7625 28 9 3.7528 -1.3336 5.6321 29 1 -0.3634 0.5127 0.8906 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1313 1.4411 -0.0005 33 1 1.6773 1.9566 -0.8893 34 1 1.6796 1.9559 0.8907 35 1 3.1279 -0.6463 -1.2978 36 1 1.6034 -0.2735 -2.1402 37 1 0.2356 -5.6921 -3.2420 38 1 3.0976 -3.0043 0.0869 39 1 1.5569 -3.8925 -0.0125 40 1 1.8475 -2.6627 2.1671 41 1 0.4129 -2.1351 1.2544 42 1 0.7807 0.5326 2.4077 43 1 -0.1023 2.4936 6.5451 44 1 4.5187 0.4577 6.2377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941031597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:42 Heat of formation + Delta-G solvation = -76.737106 kcal Electronic energy + Delta-G solvation = -31661.690791 eV Core-core repulsion = 27059.909868 eV Total energy + Delta-G solvation = -4601.780923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.07317 -47.06352 -43.99931 -40.28762 -38.43233 -35.79021 -34.91392 -33.34914 -31.93011 -31.56578 -30.24196 -27.41607 -27.05775 -26.44484 -25.32150 -24.00762 -22.63589 -21.95173 -21.27917 -20.72784 -19.36827 -18.23503 -17.96205 -17.40842 -17.19039 -17.01140 -16.80292 -16.18027 -15.94113 -15.18074 -14.89217 -14.68876 -14.43657 -14.33769 -13.99145 -13.87138 -13.80870 -13.41634 -13.29634 -13.03225 -12.82153 -12.43138 -12.14561 -12.10054 -11.86843 -11.75526 -11.64130 -11.39112 -11.38159 -11.27223 -10.91018 -10.64114 -10.47526 -10.38297 -10.11804 -10.03119 -9.78919 -9.67574 -9.52633 -8.95959 -8.63550 -7.01917 -5.97505 -3.33924 0.24633 1.79784 1.89209 2.77239 2.93414 3.01386 3.33582 3.49830 3.52524 3.66550 3.93565 4.23556 4.51856 4.58782 4.72066 4.83833 4.85442 4.88320 5.04023 5.12514 5.14365 5.37077 5.42570 5.60634 5.61351 5.72300 5.80264 5.90857 5.95710 6.10092 6.12992 6.22337 6.31052 6.35120 6.53152 6.54916 6.60033 6.62742 6.69813 6.85812 6.92661 7.29928 7.87739 7.92143 8.29592 8.90109 9.69220 10.05716 11.18162 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.003320 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.945677 B = 8432.876288 C = 9442.797796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.138 4.138 4 C 0.163 3.837 5 N -0.603 5.603 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.907 5.907 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.129 3.871 15 C -0.146 4.146 16 C 0.162 3.838 17 H 0.089 0.911 18 N -0.702 5.702 19 C 0.591 3.409 20 O -0.488 6.488 21 C -0.050 4.050 22 O -0.182 6.182 23 C 0.204 3.796 24 N -0.468 5.468 25 C -0.018 4.018 26 C 0.355 3.645 27 F -0.191 7.191 28 F -0.161 7.161 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.069 0.931 37 H 0.263 0.737 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.402 0.598 43 H 0.263 0.737 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 16.715 17.207 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C -0.195 4.195 4 C 0.036 3.964 5 N -0.326 5.326 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.550 5.550 10 Si 0.711 3.289 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.003 3.997 15 C -0.186 4.186 16 C 0.059 3.941 17 H 0.107 0.893 18 N -0.353 5.353 19 C 0.373 3.627 20 O -0.364 6.364 21 C -0.108 4.108 22 O -0.067 6.067 23 C -0.021 4.021 24 N -0.195 5.195 25 C -0.142 4.142 26 C 0.300 3.700 27 F -0.172 7.172 28 F -0.142 7.142 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.238 0.762 43 H 0.279 0.721 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.642 16.143 17.706 24.106 hybrid contribution -0.039 -0.431 -0.056 0.436 sum 2.603 15.712 17.650 23.773 Atomic orbital electron populations 1.21813 0.93895 1.03445 0.99913 1.21379 0.96931 0.94828 0.96102 1.21816 1.00917 0.95528 1.01283 1.20938 0.96464 0.84857 0.94145 1.44359 1.65709 1.06585 1.15901 1.18879 1.19706 0.92092 1.08142 0.89615 1.25260 0.97720 0.96683 0.97712 1.69833 1.32602 1.08867 1.43716 0.86999 0.85486 0.79373 0.77088 1.21589 1.23167 1.19454 1.21317 0.97283 0.95745 0.85381 1.22491 1.01832 0.94625 0.99650 1.21136 0.99650 0.91532 0.81754 0.89343 1.46235 1.29290 1.49909 1.09826 1.16405 0.84306 0.81002 0.80961 1.91030 1.24284 1.38518 1.82534 1.23326 0.89415 0.99689 0.98337 1.84568 1.39555 1.48954 1.33647 1.28452 0.98364 0.98140 0.77184 1.70222 1.05117 1.11225 1.32948 1.22525 1.00124 1.01436 0.90158 1.19345 0.93822 0.83783 0.73024 1.93032 1.97416 1.93143 1.33609 1.93225 1.96707 1.50690 1.73552 0.94665 0.92609 0.90341 0.92775 0.92274 0.93390 0.95655 0.91251 0.92749 0.95374 0.90597 0.92128 0.91015 0.76231 0.72116 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.83 37.16 0.29 -1.60 16 2 C -0.09 -1.29 0.56 -154.38 -0.09 -1.38 16 3 C -0.14 -1.58 8.31 37.16 0.31 -1.27 16 4 C 0.16 2.94 5.20 -3.72 -0.02 2.92 16 5 N -0.60 -13.43 2.21 -172.33 -0.38 -13.81 16 6 C -0.26 -6.92 10.04 -15.06 -0.15 -7.07 16 7 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 8 C 0.03 0.71 5.23 -17.43 -0.09 0.62 16 9 N -0.91 -27.28 13.97 55.49 0.78 -26.50 16 10 Si 0.88 22.22 24.35 -169.99 -4.14 18.08 16 11 H -0.29 -7.11 6.62 56.52 0.37 -6.73 16 12 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 13 H -0.27 -6.70 6.63 56.52 0.37 -6.33 16 14 C 0.13 2.75 4.20 -3.71 -0.02 2.74 16 15 C -0.15 -2.57 5.31 -26.61 -0.14 -2.71 16 16 C 0.16 2.43 1.57 -67.89 -0.11 2.32 16 17 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 18 N -0.70 -8.75 4.29 -55.06 -0.24 -8.99 16 19 C 0.59 7.95 7.70 -12.83 -0.10 7.85 16 20 O -0.49 -7.94 12.80 5.21 0.07 -7.87 16 21 C -0.05 -0.58 7.14 -36.84 -0.26 -0.84 16 22 O -0.18 -1.60 10.57 4.42 0.05 -1.55 16 23 C 0.20 1.37 13.21 52.25 0.69 2.06 16 24 N -0.47 -4.81 11.21 -10.88 -0.12 -4.93 16 25 C -0.02 -0.21 6.78 -82.47 -0.56 -0.76 16 26 C 0.35 4.05 5.63 36.01 0.20 4.26 16 27 F -0.19 -2.37 17.29 2.25 0.04 -2.33 16 28 F -0.16 -2.33 13.49 2.25 0.03 -2.30 16 29 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.48 7.36 -51.93 -0.38 0.10 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.03 0.61 7.08 -51.93 -0.37 0.24 16 39 H 0.08 1.80 4.50 -51.93 -0.23 1.56 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.27 6.33 -51.93 -0.33 0.94 16 42 H 0.40 4.23 6.46 -40.82 -0.26 3.97 16 43 H 0.26 0.23 8.06 -52.49 -0.42 -0.19 16 44 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -33.09 352.27 -4.25 -37.34 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.60 Total: 0.42 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -0.04 Total: 7.14 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.04 Total: -54.23 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.11 Total: -9.42 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.14 Total: 18.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.09 -4.25 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941031597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.396 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds