Wall clock time and date at job start Wed Apr 1 2020 01:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30019 * 127.33348 * 2 1 4 4 O 1.20658 * 112.29940 * 180.29950 * 3 2 1 5 5 C 1.33500 * 113.15399 * 359.71341 * 4 3 2 6 6 C 1.50703 * 126.82394 * 179.97438 * 5 4 3 7 7 F 1.39901 * 109.47372 * 30.03154 * 6 5 4 8 8 F 1.39907 * 109.46518 * 150.02952 * 6 5 4 9 9 C 1.37359 * 106.34499 * 0.02562 * 5 4 3 10 10 C 1.47392 * 128.56609 * 179.97438 * 9 5 4 11 11 O 1.21609 * 119.99885 * 89.99548 * 10 9 5 12 12 N 1.34773 * 120.00143 * 270.00254 * 10 9 5 13 13 C 1.46503 * 119.99936 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.45845 * 324.96583 * 13 12 10 15 15 C 1.53036 * 109.46251 * 84.92717 * 13 12 10 16 16 C 1.53191 * 109.31342 * 58.65599 * 15 13 12 17 17 N 1.47200 * 108.85885 * 54.64890 * 16 15 13 18 18 C 1.36937 * 120.81872 * 126.33937 * 17 16 15 19 19 H 1.07999 * 120.00448 * 207.53835 * 18 17 16 20 20 C 1.38820 * 119.99269 * 27.54201 * 18 17 16 21 21 N 1.31613 * 120.00097 * 17.25596 * 20 18 17 22 22 Si 1.86807 * 119.99669 * 197.25602 * 20 18 17 23 23 H 1.48497 * 109.46957 * 60.00245 * 22 20 18 24 24 H 1.48494 * 109.47182 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47157 * 300.00224 * 22 20 18 26 26 C 1.46932 * 118.55295 * 306.48394 * 17 16 15 27 27 C 1.53045 * 109.45847 * 204.99630 * 13 12 10 28 28 H 1.09004 * 109.49609 * 181.39445 * 27 13 12 29 29 C 1.52998 * 109.52244 * 61.31104 * 27 13 12 30 30 H 1.08995 * 109.47060 * 270.14958 * 1 2 3 31 31 H 1.09006 * 109.46758 * 30.14591 * 1 2 3 32 32 H 1.08997 * 109.47217 * 150.14548 * 1 2 3 33 33 H 1.08994 * 109.47748 * 270.02333 * 6 5 4 34 34 H 0.96994 * 120.00124 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.49773 * 178.60524 * 15 13 12 36 36 H 1.09005 * 109.50017 * 298.70415 * 15 13 12 37 37 H 1.09001 * 109.58841 * 174.42550 * 16 15 13 38 38 H 1.09005 * 109.58647 * 294.84891 * 16 15 13 39 39 H 0.97008 * 119.99917 * 179.97438 * 21 20 18 40 40 H 1.08994 * 109.58322 * 293.67137 * 26 17 16 41 41 H 1.09002 * 109.58205 * 173.39282 * 26 17 16 42 42 H 1.09000 * 109.47006 * 300.14257 * 29 27 13 43 43 H 1.09001 * 109.47450 * 60.14797 * 29 27 13 44 44 H 1.09003 * 109.46936 * 180.14528 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0058 5 6 3.6494 -0.6008 -0.0047 6 6 4.9712 -1.3246 -0.0112 7 9 5.9326 -0.5459 0.6419 8 9 4.8352 -2.5496 0.6507 9 6 2.3991 -1.1696 0.0025 10 6 2.0401 -2.5991 0.0061 11 8 1.8975 -3.1876 1.0607 12 7 1.8699 -3.2541 -1.1594 13 6 1.5124 -4.6749 -1.1558 14 1 2.0001 -5.1699 -0.3161 15 6 -0.0052 -4.8185 -1.0206 16 6 -0.6885 -4.0925 -2.1836 17 7 -0.1445 -4.6068 -3.4510 18 6 -0.9757 -5.0851 -4.4285 19 1 -0.6205 -5.8343 -5.1205 20 6 -2.2749 -4.6067 -4.5299 21 7 -2.6099 -3.4810 -3.9360 22 14 -3.5476 -5.5609 -5.5094 23 1 -3.7089 -6.9159 -4.9238 24 1 -4.8474 -4.8442 -5.4627 25 1 -3.0985 -5.6814 -6.9196 26 6 1.3120 -4.5993 -3.6445 27 6 1.9729 -5.3198 -2.4652 28 1 1.6853 -6.3711 -2.4737 29 6 3.4939 -5.2053 -2.5842 30 1 -0.3633 0.0027 1.0276 31 1 -0.3633 0.8887 -0.5161 32 1 -0.3633 -0.8913 -0.5116 33 1 5.2841 -1.5005 -1.0403 34 1 1.9833 -2.7847 -2.0006 35 1 -0.2741 -5.8746 -1.0427 36 1 -0.3295 -4.3797 -0.0769 37 1 -1.7626 -4.2744 -2.1475 38 1 -0.4944 -3.0223 -2.1109 39 1 -3.5178 -3.1466 -4.0072 40 1 1.6691 -3.5706 -3.6909 41 1 1.5599 -5.1144 -4.5727 42 1 3.7810 -4.1539 -2.5745 43 1 3.9637 -5.7181 -1.7449 44 1 3.8207 -5.6626 -3.5182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942172212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:52 Heat of formation + Delta-G solvation = -71.712294 kcal Electronic energy + Delta-G solvation = -31924.450232 eV Core-core repulsion = 27322.887201 eV Total energy + Delta-G solvation = -4601.563031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.26332 -48.29539 -46.22786 -41.28422 -39.17332 -35.99543 -35.87037 -34.36461 -33.81633 -32.85125 -31.72652 -29.94597 -28.24535 -27.35868 -27.09873 -25.61220 -23.73970 -22.79646 -22.23889 -21.65663 -20.15769 -19.70581 -19.39838 -18.67556 -18.40340 -18.33679 -18.20656 -17.11796 -16.78131 -16.49194 -16.14649 -15.70706 -15.42356 -15.16399 -15.10132 -14.77559 -14.63848 -14.60865 -14.53840 -14.42314 -14.23522 -14.10463 -13.84661 -13.51225 -13.14815 -12.93419 -12.72516 -12.66815 -12.59288 -12.50531 -12.35578 -12.22169 -11.94499 -11.66605 -11.48554 -11.41012 -11.15075 -11.08975 -10.99865 -10.50140 -10.11447 -8.63849 -7.85006 -5.28224 -0.23976 0.58737 1.08557 1.26519 1.48249 1.51239 1.56456 2.00769 2.48537 2.53067 2.86147 2.88746 3.30334 3.31865 3.42846 3.64308 3.70591 3.77941 3.87851 3.89865 4.08634 4.15292 4.29460 4.43438 4.47190 4.56908 4.62160 4.68263 4.79615 4.83604 4.97422 5.00984 5.04167 5.11868 5.19763 5.35663 5.44762 5.48824 5.57506 5.67463 5.76979 6.36536 6.41198 6.84013 6.99878 7.17588 7.89261 8.39924 9.20618 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.003599 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.731059 B = 7777.041863 C = 8762.299791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.054 3.946 3 N -0.353 5.353 4 O 0.128 5.872 5 C -0.065 4.065 6 C 0.364 3.636 7 F -0.187 7.187 8 F -0.187 7.187 9 C -0.213 4.213 10 C 0.600 3.400 11 O -0.553 6.553 12 N -0.687 5.687 13 C 0.167 3.833 14 H 0.083 0.917 15 C -0.145 4.145 16 C 0.186 3.814 17 N -0.607 5.607 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.045 4.045 21 N -0.930 5.930 22 Si 0.958 3.042 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.276 1.276 26 C 0.149 3.851 27 C -0.106 4.106 28 H 0.079 0.921 29 C -0.135 4.135 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.204 0.796 34 H 0.408 0.592 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.005 0.995 39 H 0.248 0.752 40 H 0.023 0.977 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.958 3.935 5.372 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 N -0.056 5.056 4 O 0.062 5.938 5 C -0.130 4.130 6 C 0.310 3.690 7 F -0.168 7.168 8 F -0.168 7.168 9 C -0.221 4.221 10 C 0.384 3.616 11 O -0.432 6.432 12 N -0.337 5.337 13 C 0.063 3.937 14 H 0.101 0.899 15 C -0.185 4.185 16 C 0.061 3.939 17 N -0.330 5.330 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.241 4.241 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.023 3.977 27 C -0.127 4.127 28 H 0.098 0.902 29 C -0.193 4.193 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.220 0.780 34 H 0.245 0.755 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.057 0.943 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.508 4.878 6.113 17.369 hybrid contribution -1.430 -0.764 -0.550 1.712 sum 14.078 4.114 5.563 15.687 Atomic orbital electron populations 1.20362 0.83580 1.05077 1.04845 1.25139 0.99673 0.85699 1.00160 1.73617 0.89265 1.23224 1.19518 1.84585 1.21277 1.21016 1.66887 1.25580 0.97651 0.85491 1.04317 1.20236 0.78247 0.73760 0.96805 1.93075 1.64147 1.75153 1.84382 1.93130 1.95666 1.43767 1.84210 1.22098 0.92849 0.95704 1.11421 1.16828 0.76793 0.83728 0.84229 1.90814 1.52025 1.68141 1.32182 1.45966 1.68263 1.11734 1.07779 1.20889 0.94134 0.79762 0.98899 0.89880 1.22414 0.96191 1.01243 0.98653 1.20480 0.97018 0.93274 0.83170 1.44306 1.01305 1.73482 1.13913 1.19444 0.94160 1.15614 1.09804 0.91480 1.25650 1.00882 0.96583 1.00991 1.70146 1.18481 1.20000 1.48975 0.85481 0.78559 0.78229 0.79005 1.20811 1.22446 1.20147 1.21090 0.83263 0.96956 0.96390 1.21810 0.96911 1.00242 0.93695 0.90241 1.21717 0.92527 1.02433 1.02575 0.88322 0.88307 0.90208 0.77970 0.75480 0.91802 0.93114 0.93427 0.97690 0.94318 0.95960 0.92329 0.92017 0.91901 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.98 10.49 71.24 0.75 -1.23 16 2 C 0.05 1.46 7.59 45.16 0.34 1.80 16 3 N -0.35 -9.33 12.01 -44.77 -0.54 -9.87 16 4 O 0.13 2.99 11.06 76.93 0.85 3.84 16 5 C -0.06 -1.39 7.13 25.48 0.18 -1.21 16 6 C 0.36 5.50 5.81 71.24 0.41 5.92 16 7 F -0.19 -3.17 17.32 44.97 0.78 -2.39 16 8 F -0.19 -3.99 16.11 44.97 0.72 -3.26 16 9 C -0.21 -5.66 6.19 -18.75 -0.12 -5.77 16 10 C 0.60 18.01 6.55 86.65 0.57 18.58 16 11 O -0.55 -20.42 16.77 -4.06 -0.07 -20.49 16 12 N -0.69 -19.09 3.59 -445.70 -1.60 -20.69 16 13 C 0.17 5.02 2.21 45.02 0.10 5.12 16 14 H 0.08 2.50 7.58 -2.39 -0.02 2.48 16 15 C -0.14 -5.33 5.77 30.67 0.18 -5.15 16 16 C 0.19 8.33 5.07 86.31 0.44 8.77 16 17 N -0.61 -27.46 3.01 -698.38 -2.10 -29.56 16 18 C -0.26 -13.36 9.59 84.04 0.81 -12.56 16 19 H 0.07 3.36 7.89 -2.91 -0.02 3.33 16 20 C -0.05 -2.41 4.92 84.86 0.42 -1.99 16 21 N -0.93 -52.44 11.18 21.65 0.24 -52.20 16 22 Si 0.96 43.31 29.59 68.60 2.03 45.34 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 26 C 0.15 5.12 5.49 86.36 0.47 5.60 16 27 C -0.11 -2.91 2.67 -10.72 -0.03 -2.94 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 C -0.13 -2.63 9.06 71.98 0.65 -1.98 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.10 2.12 8.14 -2.38 -0.02 2.11 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 33 H 0.20 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.41 10.61 6.71 -92.71 -0.62 9.99 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.05 2.51 6.04 -2.39 -0.01 2.50 16 38 H 0.01 0.23 7.74 -2.38 -0.02 0.22 16 39 H 0.25 13.75 8.31 -92.70 -0.77 12.98 16 40 H 0.02 0.74 6.64 -2.39 -0.02 0.72 16 41 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 42 H 0.06 1.06 7.54 -2.39 -0.02 1.04 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -67.01 370.16 5.92 -61.09 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.43 Total: 15.25 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 5.17 Total: 12.94 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.00 Total: -112.31 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.78 Total: -16.65 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 1.50 Total: -5.66 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -67.01 5.92 -61.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942172212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.617 kcal (2) G-P(sol) polarization free energy of solvation -67.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds