Wall clock time and date at job start Wed Apr 1 2020 01:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30020 * 127.33783 * 2 1 4 4 O 1.20650 * 112.30409 * 180.27809 * 3 2 1 5 5 C 1.33499 * 113.15621 * 359.73114 * 4 3 2 6 6 C 1.50699 * 126.83138 * 179.97438 * 5 4 3 7 7 F 1.39896 * 109.46996 * 119.99949 * 6 5 4 8 8 F 1.39898 * 109.47556 * 240.00419 * 6 5 4 9 9 C 1.37352 * 106.33903 * 0.02562 * 5 4 3 10 10 C 1.47405 * 128.56187 * 179.97438 * 9 5 4 11 11 O 1.21606 * 119.99675 * 90.00269 * 10 9 5 12 12 N 1.34770 * 120.00501 * 269.99516 * 10 9 5 13 13 C 1.46494 * 120.00365 * 179.97438 * 12 10 9 14 14 H 1.08992 * 109.46613 * 324.98200 * 13 12 10 15 15 C 1.53047 * 109.45571 * 84.93756 * 13 12 10 16 16 C 1.52760 * 109.38266 * 181.25915 * 15 13 12 17 17 N 1.46929 * 109.00960 * 305.59022 * 16 15 13 18 18 C 1.36938 * 120.63068 * 233.58060 * 17 16 15 19 19 H 1.08000 * 119.99931 * 152.30316 * 18 17 16 20 20 C 1.38817 * 119.99746 * 332.30577 * 18 17 16 21 21 N 1.31612 * 120.00092 * 342.50375 * 20 18 17 22 22 Si 1.86798 * 119.99583 * 162.77719 * 20 18 17 23 23 H 1.48500 * 109.47109 * 60.00223 * 22 20 18 24 24 H 1.48508 * 109.46991 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47656 * 299.99742 * 22 20 18 26 26 C 1.46929 * 118.73866 * 53.30862 * 17 16 15 27 27 C 1.53039 * 109.46176 * 205.00294 * 13 12 10 28 28 H 1.09000 * 109.52347 * 298.58295 * 27 13 12 29 29 C 1.52996 * 109.49629 * 58.66545 * 27 13 12 30 30 H 1.09002 * 109.46489 * 270.14501 * 1 2 3 31 31 H 1.08997 * 109.46983 * 30.13936 * 1 2 3 32 32 H 1.08994 * 109.47426 * 150.14640 * 1 2 3 33 33 H 1.09010 * 109.47094 * 0.02562 * 6 5 4 34 34 H 0.97010 * 119.99743 * 0.02562 * 12 10 9 35 35 H 1.08994 * 109.49959 * 301.33825 * 15 13 12 36 36 H 1.09001 * 109.49807 * 61.40271 * 15 13 12 37 37 H 1.08999 * 109.51393 * 185.70211 * 16 15 13 38 38 H 1.09003 * 109.43370 * 65.42441 * 16 15 13 39 39 H 0.97003 * 120.00017 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.58437 * 66.43102 * 26 17 16 41 41 H 1.08997 * 109.58308 * 186.71283 * 26 17 16 42 42 H 1.09005 * 109.47218 * 179.83670 * 29 27 13 43 43 H 1.08993 * 109.47324 * 299.83576 * 29 27 13 44 44 H 1.09004 * 109.47251 * 59.84253 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6494 -0.6008 -0.0043 6 6 4.9711 -1.3247 -0.0104 7 9 5.0696 -2.1252 1.1327 8 9 5.0572 -2.1289 -1.1518 9 6 2.3992 -1.1695 0.0024 10 6 2.0401 -2.5992 0.0057 11 8 1.8970 -3.1877 1.0602 12 7 1.8702 -3.2541 -1.1598 13 6 1.5139 -4.6751 -1.1565 14 1 2.0018 -5.1699 -0.3169 15 6 -0.0037 -4.8197 -1.0212 16 6 -0.3705 -6.3022 -0.9864 17 7 0.1959 -6.9634 -2.1700 18 6 -0.6000 -7.7017 -3.0046 19 1 -0.3386 -7.8063 -4.0472 20 6 -1.7427 -8.3158 -2.5104 21 7 -1.8888 -8.4880 -1.2138 22 14 -3.0694 -8.9044 -3.6862 23 1 -2.4957 -9.9097 -4.6166 24 1 -4.1774 -9.5213 -2.9136 25 1 -3.5896 -7.7508 -4.4633 26 6 1.6314 -6.8122 -2.4443 27 6 1.9747 -5.3194 -2.4659 28 1 1.4685 -4.8418 -3.3048 29 6 3.4873 -5.1454 -2.6160 30 1 -0.3632 0.0026 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5115 33 1 5.7835 -0.5978 -0.0156 34 1 1.9846 -2.7847 -2.0011 35 1 -0.3342 -4.3402 -0.0999 36 1 -0.4917 -4.3462 -1.8732 37 1 -1.4553 -6.4091 -0.9922 38 1 0.0385 -6.7559 -0.0836 39 1 -2.6872 -8.9174 -0.8685 40 1 2.2070 -7.3083 -1.6629 41 1 1.8675 -7.2577 -3.4107 42 1 3.8156 -5.6070 -3.5473 43 1 3.7311 -4.0832 -2.6313 44 1 3.9930 -5.6222 -1.7763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942172214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:58 Heat of formation + Delta-G solvation = -55.056757 kcal Electronic energy + Delta-G solvation = -31447.885364 eV Core-core repulsion = 26847.044571 eV Total energy + Delta-G solvation = -4600.840793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.54072 -47.54656 -45.39470 -39.89707 -37.72891 -35.02513 -34.61300 -33.40383 -32.61449 -31.23530 -29.96063 -29.17515 -27.48837 -25.94192 -25.51432 -24.20947 -22.25198 -21.28585 -21.01788 -20.48408 -19.53110 -18.53666 -18.45658 -17.84938 -17.42073 -17.39874 -16.69906 -16.14733 -15.72127 -14.89946 -14.63860 -14.38702 -14.13782 -13.92512 -13.87793 -13.84066 -13.71144 -13.64372 -13.48607 -13.25930 -13.04995 -12.82194 -12.70174 -12.12818 -11.97163 -11.68938 -11.48466 -11.34015 -11.11811 -10.86413 -10.68386 -10.47392 -10.36755 -10.33140 -10.27788 -10.10727 -9.98515 -9.81572 -9.56092 -8.82027 -8.45156 -6.71305 -5.80330 -3.22869 0.56483 1.44244 1.83423 2.30214 3.02745 3.37339 3.38194 3.43589 3.44200 3.51005 3.70147 4.06496 4.21988 4.33253 4.47694 4.67679 4.69992 5.06509 5.13419 5.16458 5.27425 5.28868 5.38371 5.49510 5.55764 5.67886 5.85852 5.96587 6.07787 6.22030 6.22580 6.28542 6.43531 6.55060 6.63156 6.73707 6.82543 6.93732 7.32969 7.48596 7.63497 7.64888 7.77577 8.11803 8.42554 9.18833 9.82279 10.38529 11.28294 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.003075 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.187177 B = 9103.970884 C = 9934.703350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.056 3.944 3 N -0.338 5.338 4 O 0.122 5.878 5 C -0.087 4.087 6 C 0.362 3.638 7 F -0.173 7.173 8 F -0.176 7.176 9 C -0.180 4.180 10 C 0.585 3.415 11 O -0.511 6.511 12 N -0.703 5.703 13 C 0.157 3.843 14 H 0.085 0.915 15 C -0.148 4.148 16 C 0.173 3.827 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.900 5.900 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.155 3.845 27 C -0.114 4.114 28 H 0.072 0.928 29 C -0.143 4.143 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.398 0.602 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.255 0.745 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.533 18.683 0.331 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 N -0.040 5.040 4 O 0.055 5.945 5 C -0.152 4.152 6 C 0.307 3.693 7 F -0.154 7.154 8 F -0.157 7.157 9 C -0.188 4.188 10 C 0.367 3.633 11 O -0.386 6.386 12 N -0.352 5.352 13 C 0.054 3.946 14 H 0.103 0.897 15 C -0.188 4.188 16 C 0.047 3.953 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.028 3.972 27 C -0.135 4.135 28 H 0.090 0.910 29 C -0.201 4.201 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.162 0.838 34 H 0.231 0.769 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.061 19.378 1.186 22.855 hybrid contribution -0.791 -0.843 -0.886 1.456 sum 11.269 18.535 0.301 21.694 Atomic orbital electron populations 1.20319 0.84264 1.04731 1.04532 1.24902 0.99048 0.85801 1.00794 1.73611 0.88881 1.22994 1.18520 1.84544 1.21793 1.20816 1.67342 1.24962 0.97240 0.85673 1.07284 1.19200 0.92109 0.85359 0.72681 1.93149 1.96490 1.75683 1.50066 1.93116 1.96642 1.75593 1.50308 1.22434 0.92210 0.96620 1.07492 1.16828 0.78147 0.83329 0.84994 1.90885 1.49778 1.67065 1.30897 1.46252 1.69196 1.12510 1.07289 1.21196 0.96578 0.77700 0.99131 0.89665 1.22528 0.93669 1.02003 1.00584 1.20673 1.00562 0.85562 0.88498 1.44081 1.02004 1.56902 1.28427 1.19132 1.04311 1.24757 0.90385 0.91653 1.25031 1.00566 0.98178 0.95695 1.70028 1.27884 1.45330 1.11203 0.86383 0.81690 0.78493 0.80259 1.20875 1.21627 1.21062 1.20892 0.86731 0.90547 0.99029 1.21977 0.95135 1.00203 0.96173 0.90995 1.21781 0.95807 1.00876 1.01598 0.89087 0.89506 0.89145 0.83828 0.76851 0.92712 0.92518 0.89147 0.96101 0.93508 0.96103 0.92283 0.92681 0.93283 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.49 36.01 0.38 -0.35 16 2 C 0.06 0.63 7.59 -79.77 -0.61 0.03 16 3 N -0.34 -3.82 12.01 34.78 0.42 -3.40 16 4 O 0.12 1.22 11.06 18.64 0.21 1.43 16 5 C -0.09 -0.89 6.98 -34.63 -0.24 -1.13 16 6 C 0.36 2.96 5.67 36.01 0.20 3.17 16 7 F -0.17 -1.95 17.32 2.25 0.04 -1.91 16 8 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 9 C -0.18 -2.24 6.24 -102.89 -0.64 -2.89 16 10 C 0.58 8.80 7.60 -12.53 -0.10 8.71 16 11 O -0.51 -9.78 16.77 5.27 0.09 -9.69 16 12 N -0.70 -9.75 4.36 -54.85 -0.24 -9.99 16 13 C 0.16 2.63 1.88 -67.89 -0.13 2.51 16 14 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 15 C -0.15 -2.82 5.64 -26.83 -0.15 -2.97 16 16 C 0.17 4.11 5.28 -3.93 -0.02 4.09 16 17 N -0.59 -14.43 3.00 -172.58 -0.52 -14.95 16 18 C -0.26 -6.87 9.59 -15.06 -0.14 -7.02 16 19 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 21 N -0.90 -25.92 11.20 55.49 0.62 -25.30 16 22 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.16 3.12 5.80 -3.71 -0.02 3.09 16 27 C -0.11 -1.83 2.46 -90.50 -0.22 -2.06 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 C -0.14 -1.89 9.02 37.16 0.34 -1.56 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.14 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.40 4.58 8.29 -40.82 -0.34 4.24 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.58 7.36 -51.93 -0.38 0.20 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -32.37 376.06 -6.19 -38.56 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.04 Total: 1.25 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.44 Total: 3.65 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.28 Total: -53.64 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.29 Total: -8.27 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.56 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.37 -6.19 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942172214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.499 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds