Wall clock time and date at job start Wed Apr 1 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30020 * 127.33783 * 2 1 4 4 O 1.20650 * 112.30409 * 180.27809 * 3 2 1 5 5 C 1.33499 * 113.15621 * 359.73114 * 4 3 2 6 6 C 1.50699 * 126.83138 * 179.97438 * 5 4 3 7 7 F 1.39896 * 109.46996 * 119.99949 * 6 5 4 8 8 F 1.39898 * 109.47556 * 240.00419 * 6 5 4 9 9 C 1.37352 * 106.33903 * 0.02562 * 5 4 3 10 10 C 1.47405 * 128.56187 * 179.97438 * 9 5 4 11 11 O 1.21606 * 119.99675 * 90.00269 * 10 9 5 12 12 N 1.34770 * 120.00501 * 269.99516 * 10 9 5 13 13 C 1.46494 * 120.00365 * 179.97438 * 12 10 9 14 14 H 1.08992 * 109.46613 * 324.98200 * 13 12 10 15 15 C 1.53047 * 109.45571 * 84.93756 * 13 12 10 16 16 C 1.52760 * 109.38266 * 181.25915 * 15 13 12 17 17 N 1.46929 * 109.00960 * 305.59022 * 16 15 13 18 18 C 1.36938 * 120.63068 * 233.58060 * 17 16 15 19 19 H 1.08000 * 119.99931 * 152.30316 * 18 17 16 20 20 C 1.38817 * 119.99746 * 332.30577 * 18 17 16 21 21 N 1.31612 * 120.00092 * 342.50375 * 20 18 17 22 22 Si 1.86798 * 119.99583 * 162.77719 * 20 18 17 23 23 H 1.48500 * 109.47109 * 60.00223 * 22 20 18 24 24 H 1.48508 * 109.46991 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47656 * 299.99742 * 22 20 18 26 26 C 1.46929 * 118.73866 * 53.30862 * 17 16 15 27 27 C 1.53039 * 109.46176 * 205.00294 * 13 12 10 28 28 H 1.09000 * 109.52347 * 298.58295 * 27 13 12 29 29 C 1.52996 * 109.49629 * 58.66545 * 27 13 12 30 30 H 1.09002 * 109.46489 * 270.14501 * 1 2 3 31 31 H 1.08997 * 109.46983 * 30.13936 * 1 2 3 32 32 H 1.08994 * 109.47426 * 150.14640 * 1 2 3 33 33 H 1.09010 * 109.47094 * 0.02562 * 6 5 4 34 34 H 0.97010 * 119.99743 * 0.02562 * 12 10 9 35 35 H 1.08994 * 109.49959 * 301.33825 * 15 13 12 36 36 H 1.09001 * 109.49807 * 61.40271 * 15 13 12 37 37 H 1.08999 * 109.51393 * 185.70211 * 16 15 13 38 38 H 1.09003 * 109.43370 * 65.42441 * 16 15 13 39 39 H 0.97003 * 120.00017 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.58437 * 66.43102 * 26 17 16 41 41 H 1.08997 * 109.58308 * 186.71283 * 26 17 16 42 42 H 1.09005 * 109.47218 * 179.83670 * 29 27 13 43 43 H 1.08993 * 109.47324 * 299.83576 * 29 27 13 44 44 H 1.09004 * 109.47251 * 59.84253 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6494 -0.6008 -0.0043 6 6 4.9711 -1.3247 -0.0104 7 9 5.0696 -2.1252 1.1327 8 9 5.0572 -2.1289 -1.1518 9 6 2.3992 -1.1695 0.0024 10 6 2.0401 -2.5992 0.0057 11 8 1.8970 -3.1877 1.0602 12 7 1.8702 -3.2541 -1.1598 13 6 1.5139 -4.6751 -1.1565 14 1 2.0018 -5.1699 -0.3169 15 6 -0.0037 -4.8197 -1.0212 16 6 -0.3705 -6.3022 -0.9864 17 7 0.1959 -6.9634 -2.1700 18 6 -0.6000 -7.7017 -3.0046 19 1 -0.3386 -7.8063 -4.0472 20 6 -1.7427 -8.3158 -2.5104 21 7 -1.8888 -8.4880 -1.2138 22 14 -3.0694 -8.9044 -3.6862 23 1 -2.4957 -9.9097 -4.6166 24 1 -4.1774 -9.5213 -2.9136 25 1 -3.5896 -7.7508 -4.4633 26 6 1.6314 -6.8122 -2.4443 27 6 1.9747 -5.3194 -2.4659 28 1 1.4685 -4.8418 -3.3048 29 6 3.4873 -5.1454 -2.6160 30 1 -0.3632 0.0026 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5115 33 1 5.7835 -0.5978 -0.0156 34 1 1.9846 -2.7847 -2.0011 35 1 -0.3342 -4.3402 -0.0999 36 1 -0.4917 -4.3462 -1.8732 37 1 -1.4553 -6.4091 -0.9922 38 1 0.0385 -6.7559 -0.0836 39 1 -2.6872 -8.9174 -0.8685 40 1 2.2070 -7.3083 -1.6629 41 1 1.8675 -7.2577 -3.4107 42 1 3.8156 -5.6070 -3.5473 43 1 3.7311 -4.0832 -2.6313 44 1 3.9930 -5.6222 -1.7763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942172214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:57 Heat of formation + Delta-G solvation = -75.380284 kcal Electronic energy + Delta-G solvation = -31448.766658 eV Core-core repulsion = 26847.044571 eV Total energy + Delta-G solvation = -4601.722087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.25083 -48.27456 -46.24932 -41.21887 -39.26303 -36.26676 -35.89498 -34.44154 -33.98698 -32.95835 -31.65676 -29.96116 -28.34084 -27.41964 -27.02562 -25.50640 -23.76112 -22.66385 -22.19737 -21.62965 -20.96982 -19.51977 -19.31557 -18.73717 -18.49709 -18.28779 -18.15354 -17.48006 -16.85356 -16.66440 -15.96228 -15.61706 -15.57527 -15.12572 -15.06665 -14.80296 -14.67220 -14.60868 -14.57636 -14.42169 -14.30534 -14.22060 -13.74660 -13.60989 -13.07722 -13.01556 -12.74052 -12.71588 -12.58452 -12.44849 -12.33970 -12.11633 -12.05858 -11.74250 -11.61218 -11.54759 -11.17119 -11.16424 -11.11299 -10.56474 -10.15954 -8.71815 -7.87233 -5.32913 -0.27875 0.57214 1.01128 1.16361 1.48638 1.50678 1.57649 1.89815 2.52127 2.68349 2.83367 2.92547 3.25418 3.29435 3.43814 3.60376 3.66526 3.69178 3.78200 3.94085 4.00445 4.13603 4.27822 4.35794 4.48627 4.59074 4.59612 4.68603 4.71303 4.83957 4.87003 4.97651 5.00528 5.07652 5.12523 5.27218 5.37082 5.42080 5.50601 5.63667 5.69492 6.30668 6.37973 6.81285 6.95255 7.13389 7.84168 8.36705 9.19754 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.003075 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.187177 B = 9103.970884 C = 9934.703350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.055 3.945 3 N -0.348 5.348 4 O 0.138 5.862 5 C -0.065 4.065 6 C 0.355 3.645 7 F -0.193 7.193 8 F -0.182 7.182 9 C -0.213 4.213 10 C 0.593 3.407 11 O -0.558 6.558 12 N -0.687 5.687 13 C 0.169 3.831 14 H 0.060 0.940 15 C -0.132 4.132 16 C 0.183 3.817 17 N -0.608 5.608 18 C -0.264 4.264 19 H 0.073 0.927 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.151 3.849 27 C -0.099 4.099 28 H 0.082 0.918 29 C -0.134 4.134 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.205 0.795 34 H 0.414 0.586 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.058 0.942 38 H -0.011 1.011 39 H 0.249 0.751 40 H 0.010 0.990 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.071 20.918 -1.614 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 N -0.050 5.050 4 O 0.070 5.930 5 C -0.131 4.131 6 C 0.301 3.699 7 F -0.174 7.174 8 F -0.163 7.163 9 C -0.220 4.220 10 C 0.377 3.623 11 O -0.436 6.436 12 N -0.338 5.338 13 C 0.065 3.935 14 H 0.078 0.922 15 C -0.172 4.172 16 C 0.056 3.944 17 N -0.331 5.331 18 C -0.394 4.394 19 H 0.091 0.909 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.202 1.202 26 C 0.025 3.975 27 C -0.120 4.120 28 H 0.100 0.900 29 C -0.192 4.192 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.222 0.778 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.007 0.993 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.633 21.657 -0.809 25.604 hybrid contribution -1.207 -1.527 -0.255 1.963 sum 12.426 20.130 -1.064 23.680 Atomic orbital electron populations 1.20428 0.83098 1.05518 1.05007 1.25170 0.99893 0.85241 1.00295 1.73603 0.89236 1.22992 1.19157 1.84547 1.21331 1.20455 1.66620 1.25362 0.97489 0.85595 1.04629 1.19981 0.92655 0.85718 0.71549 1.93113 1.96500 1.76457 1.51342 1.93094 1.96596 1.76004 1.50650 1.22171 0.93821 0.95272 1.10764 1.17059 0.76838 0.84224 0.84211 1.90867 1.51756 1.68465 1.32529 1.45941 1.68570 1.11201 1.08042 1.20802 0.94468 0.79401 0.98828 0.92190 1.22264 0.95712 0.98453 1.00756 1.20385 0.98363 0.88286 0.87366 1.44321 1.03779 1.56975 1.28058 1.19528 1.04663 1.24132 0.91064 0.90910 1.25817 1.02744 0.98983 0.97051 1.70201 1.28168 1.46807 1.13097 0.85339 0.78710 0.78167 0.78209 1.19993 1.22390 1.20185 1.21067 0.84180 0.93445 0.98850 1.21772 0.97512 0.96969 0.95723 0.89966 1.21715 0.92955 1.02328 1.02185 0.88754 0.87606 0.89441 0.77843 0.74922 0.93071 0.91597 0.92381 0.99338 0.94164 0.97221 0.91532 0.90985 0.91300 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.49 71.24 0.75 -0.63 16 2 C 0.05 1.15 7.59 45.15 0.34 1.49 16 3 N -0.35 -7.08 12.01 -44.78 -0.54 -7.62 16 4 O 0.14 2.36 11.06 76.94 0.85 3.21 16 5 C -0.07 -1.17 6.98 25.48 0.18 -0.99 16 6 C 0.36 4.71 5.67 71.24 0.40 5.11 16 7 F -0.19 -4.03 17.32 44.97 0.78 -3.25 16 8 F -0.18 -2.92 17.32 44.97 0.78 -2.14 16 9 C -0.21 -4.98 6.24 -18.74 -0.12 -5.09 16 10 C 0.59 17.47 7.60 86.66 0.66 18.13 16 11 O -0.56 -21.73 16.77 -4.05 -0.07 -21.80 16 12 N -0.69 -18.17 4.36 -445.71 -1.95 -20.12 16 13 C 0.17 5.64 1.88 45.02 0.08 5.73 16 14 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 15 C -0.13 -5.12 5.64 30.53 0.17 -4.95 16 16 C 0.18 9.06 5.28 86.22 0.46 9.51 16 17 N -0.61 -30.20 3.00 -699.91 -2.10 -32.30 16 18 C -0.26 -14.25 9.59 84.03 0.81 -13.45 16 19 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 20 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 21 N -0.94 -55.99 11.20 21.65 0.24 -55.74 16 22 Si 0.97 44.39 29.59 68.60 2.03 46.42 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 C 0.15 6.01 5.80 86.36 0.50 6.51 16 27 C -0.10 -3.04 2.46 -10.72 -0.03 -3.06 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 C -0.13 -3.19 9.02 71.98 0.65 -2.54 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.21 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.41 8.47 8.29 -92.70 -0.77 7.70 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.06 3.24 6.04 -2.39 -0.01 3.23 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 42 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.07 1.39 7.36 -2.39 -0.02 1.37 16 44 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -73.24 376.06 5.58 -67.66 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.28 Total: 12.32 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 5.27 Total: 13.36 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -4.34 Total: -115.78 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.78 Total: -18.59 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 1.56 Total: -5.39 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -73.24 5.58 -67.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942172214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.720 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds