Wall clock time and date at job start Wed Apr 1 2020 01:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30011 * 127.34213 * 2 1 4 4 O 1.20658 * 112.30950 * 180.30453 * 3 2 1 5 5 C 1.33501 * 113.15166 * 359.71666 * 4 3 2 6 6 C 1.50692 * 126.82480 * 179.97438 * 5 4 3 7 7 F 1.39898 * 109.47018 * 120.02757 * 6 5 4 8 8 F 1.39905 * 109.46928 * 240.01831 * 6 5 4 9 9 C 1.37361 * 106.34195 * 0.02562 * 5 4 3 10 10 C 1.47392 * 128.56537 * 179.97438 * 9 5 4 11 11 O 1.21605 * 120.00690 * 89.99768 * 10 9 5 12 12 N 1.34784 * 119.99976 * 269.99719 * 10 9 5 13 13 C 1.46499 * 120.00249 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.45782 * 34.97005 * 13 12 10 15 15 C 1.53039 * 109.45627 * 274.99951 * 13 12 10 16 16 C 1.53192 * 109.30888 * 178.61788 * 15 13 12 17 17 N 1.46927 * 108.77883 * 54.63294 * 16 15 13 18 18 C 1.36937 * 120.62710 * 126.36980 * 17 16 15 19 19 H 1.07999 * 119.99246 * 210.81095 * 18 17 16 20 20 C 1.38810 * 120.00280 * 30.81584 * 18 17 16 21 21 N 1.31614 * 119.99755 * 197.75165 * 20 18 17 22 22 Si 1.86799 * 120.00038 * 17.75617 * 20 18 17 23 23 H 1.48500 * 109.47011 * 273.11833 * 22 20 18 24 24 H 1.48500 * 109.47463 * 33.11467 * 22 20 18 25 25 H 1.48498 * 109.47269 * 153.11822 * 22 20 18 26 26 C 1.46924 * 118.73581 * 306.64436 * 17 16 15 27 27 H 1.09004 * 109.58336 * 293.56803 * 26 17 16 28 28 C 1.52997 * 109.58321 * 173.14644 * 26 17 16 29 29 C 1.52761 * 109.01009 * 53.30903 * 26 17 16 30 30 H 1.09001 * 109.47321 * 270.14546 * 1 2 3 31 31 H 1.09001 * 109.47167 * 30.14129 * 1 2 3 32 32 H 1.08998 * 109.47426 * 150.14283 * 1 2 3 33 33 H 1.08999 * 109.47950 * 0.02562 * 6 5 4 34 34 H 0.97004 * 119.99180 * 359.97438 * 12 10 9 35 35 H 1.08998 * 109.50163 * 58.66654 * 15 13 12 36 36 H 1.09000 * 109.52359 * 298.57907 * 15 13 12 37 37 H 1.09003 * 109.58543 * 294.84129 * 16 15 13 38 38 H 1.09000 * 109.70367 * 174.49237 * 16 15 13 39 39 H 0.97007 * 119.99907 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.47745 * 59.99802 * 28 26 17 41 41 H 1.08999 * 109.47103 * 180.02562 * 28 26 17 42 42 H 1.09002 * 109.47048 * 299.99946 * 28 26 17 43 43 H 1.08997 * 109.56415 * 185.54880 * 29 26 17 44 44 H 1.09001 * 109.35959 * 65.49641 * 29 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6494 -0.6009 -0.0049 6 6 4.9711 -1.3247 -0.0116 7 9 5.0699 -2.1258 1.1311 8 9 5.0567 -2.1287 -1.1534 9 6 2.3991 -1.1697 0.0023 10 6 2.0399 -2.5992 0.0057 11 8 1.8973 -3.1879 1.0601 12 7 1.8695 -3.2541 -1.1600 13 6 1.5131 -4.6750 -1.1567 14 1 0.8581 -4.8831 -0.3107 15 6 2.7841 -5.5191 -1.0371 16 6 2.4050 -7.0029 -0.9991 17 7 1.5842 -7.3117 -2.1780 18 6 1.9286 -8.3360 -3.0190 19 1 1.6856 -8.2769 -4.0696 20 6 2.5900 -9.4503 -2.5211 21 7 3.2257 -10.2594 -3.3418 22 14 2.5778 -9.8014 -0.6865 23 1 3.6962 -9.0729 -0.0356 24 1 1.2882 -9.3502 -0.1047 25 1 2.7393 -11.2602 -0.4606 26 6 0.3904 -6.4966 -2.4406 27 1 -0.3460 -6.6633 -1.6544 28 6 -0.2058 -6.8821 -3.7959 29 6 0.7889 -5.0220 -2.4594 30 1 -0.3634 0.0026 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5116 33 1 5.7835 -0.5980 -0.0172 34 1 1.9829 -2.7843 -2.0011 35 1 3.3115 -5.2548 -0.1205 36 1 3.4289 -5.3302 -1.8953 37 1 1.8363 -7.2117 -0.0930 38 1 3.3080 -7.6133 -1.0125 39 1 3.6876 -11.0383 -2.9940 40 1 -0.4822 -7.9364 -3.7846 41 1 -1.0910 -6.2761 -3.9890 42 1 0.5313 -6.7082 -4.5798 43 1 -0.1037 -4.4039 -2.5552 44 1 1.4521 -4.8377 -3.3046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947436735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:01 Heat of formation + Delta-G solvation = -47.379883 kcal Electronic energy + Delta-G solvation = -31417.501387 eV Core-core repulsion = 26816.993488 eV Total energy + Delta-G solvation = -4600.507899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.52661 -47.53241 -45.45748 -39.96798 -38.01006 -35.11442 -34.83830 -33.44030 -32.41620 -31.70924 -30.23882 -29.28319 -27.50750 -26.61096 -25.29078 -24.16425 -22.67657 -21.65920 -21.02682 -20.39141 -19.57403 -18.63068 -18.53344 -17.85822 -17.51094 -17.40520 -16.44341 -16.23317 -15.94896 -15.21119 -14.64846 -14.59259 -14.36688 -14.14437 -13.88160 -13.84967 -13.82557 -13.78415 -13.62660 -13.44253 -13.16605 -13.11391 -12.53329 -12.01190 -11.99581 -11.86848 -11.74571 -11.38987 -11.19135 -11.09753 -10.68287 -10.55946 -10.43930 -10.37877 -10.21726 -10.16362 -10.05900 -9.73481 -9.44893 -8.96898 -8.59101 -6.93724 -5.93412 -3.33538 0.50491 1.36308 1.78504 2.17814 2.91288 3.34584 3.35402 3.50615 3.51133 3.54344 3.60876 4.01686 4.15221 4.33362 4.54933 4.58248 4.62779 4.86059 4.99360 5.03960 5.09610 5.16358 5.25689 5.36823 5.55000 5.57340 5.71769 5.94434 5.95835 6.04717 6.17559 6.21853 6.32655 6.36687 6.47109 6.56176 6.68255 6.77178 6.93401 7.03295 7.34885 7.56519 7.98029 7.99906 8.36356 8.94585 9.73456 10.11027 11.22175 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.003366 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.484084 B = 8317.289643 C = 9166.334971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 N -0.337 5.337 4 O 0.123 5.877 5 C -0.081 4.081 6 C 0.360 3.640 7 F -0.173 7.173 8 F -0.174 7.174 9 C -0.184 4.184 10 C 0.587 3.413 11 O -0.512 6.512 12 N -0.705 5.705 13 C 0.150 3.850 14 H 0.086 0.914 15 C -0.141 4.141 16 C 0.128 3.872 17 N -0.602 5.602 18 C -0.260 4.260 19 H 0.091 0.909 20 C 0.026 3.974 21 N -0.910 5.910 22 Si 0.882 3.118 23 H -0.286 1.286 24 H -0.272 1.272 25 H -0.304 1.304 26 C 0.176 3.824 27 H 0.032 0.968 28 C -0.135 4.135 29 C -0.136 4.136 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.400 0.600 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 23.158 4.276 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 N -0.039 5.039 4 O 0.056 5.944 5 C -0.146 4.146 6 C 0.305 3.695 7 F -0.153 7.153 8 F -0.155 7.155 9 C -0.191 4.191 10 C 0.369 3.631 11 O -0.387 6.387 12 N -0.355 5.355 13 C 0.048 3.952 14 H 0.104 0.896 15 C -0.181 4.181 16 C 0.002 3.998 17 N -0.327 5.327 18 C -0.388 4.388 19 H 0.108 0.892 20 C -0.173 4.173 21 N -0.553 5.553 22 Si 0.713 3.287 23 H -0.213 1.213 24 H -0.197 1.197 25 H -0.232 1.232 26 C 0.069 3.931 27 H 0.049 0.951 28 C -0.193 4.193 29 C -0.176 4.176 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.163 0.837 34 H 0.234 0.766 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.664 23.800 4.998 24.376 hybrid contribution 0.161 -0.842 0.733 1.128 sum -1.504 22.958 5.731 23.710 Atomic orbital electron populations 1.20298 0.84333 1.04613 1.04449 1.24874 0.98990 0.85813 1.01008 1.73612 0.88896 1.23000 1.18417 1.84555 1.21751 1.20825 1.67263 1.25014 0.97312 0.85606 1.06678 1.19232 0.92036 0.85453 0.72790 1.93152 1.96472 1.75641 1.50082 1.93140 1.96621 1.75543 1.50166 1.22371 0.92283 0.96452 1.08027 1.16845 0.78014 0.83341 0.84902 1.90879 1.49561 1.67322 1.30932 1.46234 1.69556 1.12179 1.07519 1.21128 0.97186 0.77266 0.99669 0.89606 1.22394 0.96655 0.97374 1.01676 1.21372 0.95733 0.92895 0.89834 1.44482 1.24134 1.35867 1.28214 1.18899 1.34624 0.94068 0.91231 0.89158 1.25337 0.98766 0.96033 0.97123 1.69799 1.34687 1.16380 1.34473 0.87004 0.78419 0.75895 0.87381 1.21350 1.19710 1.23220 1.20283 0.88697 0.88003 0.96157 0.95058 1.21798 0.98864 1.01872 0.96757 1.22331 0.99523 0.99527 0.96171 0.89148 0.89465 0.89332 0.83748 0.76584 0.92324 0.91349 0.95628 0.90377 0.92767 0.91476 0.94097 0.92346 0.92070 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.49 36.00 0.38 -0.21 16 2 C 0.05 0.56 7.59 -79.77 -0.61 -0.04 16 3 N -0.34 -3.60 12.01 34.78 0.42 -3.18 16 4 O 0.12 1.19 11.06 18.63 0.21 1.40 16 5 C -0.08 -0.82 6.98 -34.63 -0.24 -1.06 16 6 C 0.36 3.12 5.68 36.00 0.20 3.32 16 7 F -0.17 -2.04 17.32 2.25 0.04 -2.00 16 8 F -0.17 -1.85 17.32 2.25 0.04 -1.81 16 9 C -0.18 -2.17 6.24 -102.89 -0.64 -2.82 16 10 C 0.59 8.35 7.60 -12.53 -0.10 8.25 16 11 O -0.51 -9.29 16.77 5.27 0.09 -9.20 16 12 N -0.71 -9.14 5.07 -54.86 -0.28 -9.41 16 13 C 0.15 2.35 2.42 -67.89 -0.16 2.18 16 14 H 0.09 1.47 7.57 -51.93 -0.39 1.07 16 15 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 16 C 0.13 2.80 4.20 -3.71 -0.02 2.79 16 17 N -0.60 -13.75 2.73 -165.03 -0.45 -14.20 16 18 C -0.26 -6.96 9.00 -15.06 -0.14 -7.10 16 19 H 0.09 2.54 6.45 -52.49 -0.34 2.20 16 20 C 0.03 0.75 5.26 -17.43 -0.09 0.66 16 21 N -0.91 -27.54 13.97 55.49 0.78 -26.77 16 22 Si 0.88 22.51 24.34 -169.99 -4.14 18.37 16 23 H -0.29 -7.09 6.42 56.52 0.36 -6.73 16 24 H -0.27 -6.88 6.90 56.52 0.39 -6.49 16 25 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 26 C 0.18 3.25 3.48 -67.82 -0.24 3.01 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 C -0.14 -2.34 7.95 37.16 0.30 -2.05 16 29 C -0.14 -2.02 4.81 -26.83 -0.13 -2.15 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.40 4.21 8.59 -40.82 -0.35 3.86 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.03 0.57 7.16 -51.93 -0.37 0.20 16 38 H 0.08 1.89 4.60 -51.93 -0.24 1.65 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.07 1.29 7.63 -51.93 -0.40 0.89 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.06 7.44 -51.93 -0.39 0.67 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -33.47 367.54 -5.28 -38.75 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.89 Total: 0.45 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.63 Total: 2.06 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.46 Total: -53.57 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.29 Total: -7.80 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.47 -5.28 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947436735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.629 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds