Wall clock time and date at job start Wed Apr 1 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30011 * 127.34213 * 2 1 4 4 O 1.20658 * 112.30950 * 180.30453 * 3 2 1 5 5 C 1.33501 * 113.15166 * 359.71666 * 4 3 2 6 6 C 1.50692 * 126.82480 * 179.97438 * 5 4 3 7 7 F 1.39898 * 109.47018 * 120.02757 * 6 5 4 8 8 F 1.39905 * 109.46928 * 240.01831 * 6 5 4 9 9 C 1.37361 * 106.34195 * 0.02562 * 5 4 3 10 10 C 1.47392 * 128.56537 * 179.97438 * 9 5 4 11 11 O 1.21605 * 120.00690 * 89.99768 * 10 9 5 12 12 N 1.34784 * 119.99976 * 269.99719 * 10 9 5 13 13 C 1.46499 * 120.00249 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.45782 * 34.97005 * 13 12 10 15 15 C 1.53039 * 109.45627 * 274.99951 * 13 12 10 16 16 C 1.53192 * 109.30888 * 178.61788 * 15 13 12 17 17 N 1.46927 * 108.77883 * 54.63294 * 16 15 13 18 18 C 1.36937 * 120.62710 * 126.36980 * 17 16 15 19 19 H 1.07999 * 119.99246 * 210.81095 * 18 17 16 20 20 C 1.38810 * 120.00280 * 30.81584 * 18 17 16 21 21 N 1.31614 * 119.99755 * 197.75165 * 20 18 17 22 22 Si 1.86799 * 120.00038 * 17.75617 * 20 18 17 23 23 H 1.48500 * 109.47011 * 273.11833 * 22 20 18 24 24 H 1.48500 * 109.47463 * 33.11467 * 22 20 18 25 25 H 1.48498 * 109.47269 * 153.11822 * 22 20 18 26 26 C 1.46924 * 118.73581 * 306.64436 * 17 16 15 27 27 H 1.09004 * 109.58336 * 293.56803 * 26 17 16 28 28 C 1.52997 * 109.58321 * 173.14644 * 26 17 16 29 29 C 1.52761 * 109.01009 * 53.30903 * 26 17 16 30 30 H 1.09001 * 109.47321 * 270.14546 * 1 2 3 31 31 H 1.09001 * 109.47167 * 30.14129 * 1 2 3 32 32 H 1.08998 * 109.47426 * 150.14283 * 1 2 3 33 33 H 1.08999 * 109.47950 * 0.02562 * 6 5 4 34 34 H 0.97004 * 119.99180 * 359.97438 * 12 10 9 35 35 H 1.08998 * 109.50163 * 58.66654 * 15 13 12 36 36 H 1.09000 * 109.52359 * 298.57907 * 15 13 12 37 37 H 1.09003 * 109.58543 * 294.84129 * 16 15 13 38 38 H 1.09000 * 109.70367 * 174.49237 * 16 15 13 39 39 H 0.97007 * 119.99907 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.47745 * 59.99802 * 28 26 17 41 41 H 1.08999 * 109.47103 * 180.02562 * 28 26 17 42 42 H 1.09002 * 109.47048 * 299.99946 * 28 26 17 43 43 H 1.08997 * 109.56415 * 185.54880 * 29 26 17 44 44 H 1.09001 * 109.35959 * 65.49641 * 29 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7207 -0.0059 5 6 3.6494 -0.6009 -0.0049 6 6 4.9711 -1.3247 -0.0116 7 9 5.0699 -2.1258 1.1311 8 9 5.0567 -2.1287 -1.1534 9 6 2.3991 -1.1697 0.0023 10 6 2.0399 -2.5992 0.0057 11 8 1.8973 -3.1879 1.0601 12 7 1.8695 -3.2541 -1.1600 13 6 1.5131 -4.6750 -1.1567 14 1 0.8581 -4.8831 -0.3107 15 6 2.7841 -5.5191 -1.0371 16 6 2.4050 -7.0029 -0.9991 17 7 1.5842 -7.3117 -2.1780 18 6 1.9286 -8.3360 -3.0190 19 1 1.6856 -8.2769 -4.0696 20 6 2.5900 -9.4503 -2.5211 21 7 3.2257 -10.2594 -3.3418 22 14 2.5778 -9.8014 -0.6865 23 1 3.6962 -9.0729 -0.0356 24 1 1.2882 -9.3502 -0.1047 25 1 2.7393 -11.2602 -0.4606 26 6 0.3904 -6.4966 -2.4406 27 1 -0.3460 -6.6633 -1.6544 28 6 -0.2058 -6.8821 -3.7959 29 6 0.7889 -5.0220 -2.4594 30 1 -0.3634 0.0026 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5116 33 1 5.7835 -0.5980 -0.0172 34 1 1.9829 -2.7843 -2.0011 35 1 3.3115 -5.2548 -0.1205 36 1 3.4289 -5.3302 -1.8953 37 1 1.8363 -7.2117 -0.0930 38 1 3.3080 -7.6133 -1.0125 39 1 3.6876 -11.0383 -2.9940 40 1 -0.4822 -7.9364 -3.7846 41 1 -1.0910 -6.2761 -3.9890 42 1 0.5313 -6.7082 -4.5798 43 1 -0.1037 -4.4039 -2.5552 44 1 1.4521 -4.8377 -3.3046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947436735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:00 Heat of formation + Delta-G solvation = -70.440711 kcal Electronic energy + Delta-G solvation = -31418.501379 eV Core-core repulsion = 26816.993488 eV Total energy + Delta-G solvation = -4601.507891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.29513 -48.32221 -46.24631 -41.19247 -39.50924 -36.27605 -35.89863 -34.38857 -34.12424 -33.29783 -31.85499 -29.94395 -28.45856 -27.94802 -26.68301 -25.50924 -24.30329 -22.75598 -22.02568 -21.60059 -21.06205 -19.59707 -19.32359 -18.61406 -18.50943 -18.22643 -18.17766 -17.60953 -17.07934 -16.70097 -16.35631 -15.86643 -15.39035 -15.29158 -15.17404 -14.92660 -14.84398 -14.68783 -14.65689 -14.39348 -14.34222 -14.26866 -13.90213 -13.74017 -13.52011 -12.88894 -12.75660 -12.73465 -12.67453 -12.45233 -12.26157 -12.07979 -11.89383 -11.77436 -11.67898 -11.51510 -11.21135 -11.17208 -11.13080 -10.71792 -10.22505 -8.87559 -8.12632 -5.47012 -0.30243 0.57911 0.99092 1.11655 1.29750 1.40208 1.47630 1.86788 2.43318 2.66768 2.83111 2.90071 3.07158 3.22561 3.31643 3.41390 3.61797 3.66474 3.79078 3.88162 3.94271 4.16943 4.21512 4.28829 4.43226 4.52308 4.55025 4.59134 4.63008 4.69031 4.82078 4.90853 4.98650 5.00524 5.04746 5.05558 5.16467 5.33561 5.48147 5.58380 5.94470 6.22539 6.27726 6.79844 6.91485 6.95346 7.66334 8.07730 9.06833 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.003366 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.484084 B = 8317.289643 C = 9166.334971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.059 3.941 3 N -0.350 5.350 4 O 0.133 5.867 5 C -0.067 4.067 6 C 0.352 3.648 7 F -0.193 7.193 8 F -0.186 7.186 9 C -0.213 4.213 10 C 0.594 3.406 11 O -0.555 6.555 12 N -0.691 5.691 13 C 0.160 3.840 14 H 0.076 0.924 15 C -0.130 4.130 16 C 0.125 3.875 17 N -0.615 5.615 18 C -0.233 4.233 19 H 0.072 0.928 20 C -0.030 4.030 21 N -0.957 5.957 22 Si 0.933 3.067 23 H -0.279 1.279 24 H -0.268 1.268 25 H -0.313 1.313 26 C 0.164 3.836 27 H 0.037 0.963 28 C -0.129 4.129 29 C -0.121 4.121 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.203 0.797 34 H 0.415 0.585 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.051 0.949 39 H 0.259 0.741 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 26.352 4.453 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 N -0.052 5.052 4 O 0.067 5.933 5 C -0.132 4.132 6 C 0.298 3.702 7 F -0.174 7.174 8 F -0.167 7.167 9 C -0.220 4.220 10 C 0.378 3.622 11 O -0.433 6.433 12 N -0.341 5.341 13 C 0.056 3.944 14 H 0.094 0.906 15 C -0.170 4.170 16 C -0.001 4.001 17 N -0.340 5.340 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.225 4.225 21 N -0.604 5.604 22 Si 0.763 3.237 23 H -0.207 1.207 24 H -0.193 1.193 25 H -0.242 1.242 26 C 0.058 3.942 27 H 0.055 0.945 28 C -0.186 4.186 29 C -0.160 4.160 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.219 0.781 34 H 0.252 0.748 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.119 0.881 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.622 27.067 5.166 27.680 hybrid contribution 0.408 -1.724 0.641 1.884 sum -2.213 25.343 5.807 26.094 Atomic orbital electron populations 1.20464 0.82521 1.05804 1.05135 1.25253 1.00093 0.84929 0.99930 1.73607 0.89183 1.23177 1.19259 1.84560 1.21515 1.20360 1.66831 1.25278 0.97452 0.85708 1.04748 1.19979 0.93074 0.85702 0.71474 1.93110 1.96545 1.76445 1.51323 1.93111 1.96659 1.76114 1.50810 1.22191 0.93664 0.95457 1.10721 1.17042 0.76811 0.84123 0.84245 1.90860 1.51455 1.68579 1.32437 1.45962 1.68931 1.11018 1.08163 1.20834 0.95457 0.78241 0.99860 0.90597 1.22211 0.98062 0.95405 1.01307 1.21296 0.94516 0.94897 0.89375 1.44651 1.26023 1.35577 1.27773 1.18909 1.31983 0.94352 0.91073 0.91066 1.25852 0.99866 0.96644 1.00102 1.69908 1.37107 1.17455 1.35956 0.86164 0.78611 0.75038 0.83849 1.20660 1.19330 1.24153 1.20615 0.87179 0.89504 0.96853 0.94506 1.21727 1.00188 1.01021 0.95659 1.22157 1.01154 0.97194 0.95530 0.88637 0.87676 0.88723 0.78067 0.74771 0.92791 0.91581 0.95851 0.93028 0.93181 0.94148 0.89815 0.93523 0.88071 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.49 71.23 0.75 -0.25 16 2 C 0.06 1.08 7.59 45.16 0.34 1.43 16 3 N -0.35 -6.60 12.01 -44.77 -0.54 -7.14 16 4 O 0.13 2.23 11.06 76.91 0.85 3.08 16 5 C -0.07 -1.19 6.98 25.48 0.18 -1.01 16 6 C 0.35 5.24 5.68 71.23 0.40 5.64 16 7 F -0.19 -4.32 17.32 44.97 0.78 -3.54 16 8 F -0.19 -3.58 17.32 44.97 0.78 -2.80 16 9 C -0.21 -4.60 6.24 -18.74 -0.12 -4.71 16 10 C 0.59 15.89 7.60 86.65 0.66 16.54 16 11 O -0.56 -19.69 16.77 -4.05 -0.07 -19.75 16 12 N -0.69 -16.19 5.07 -445.71 -2.26 -18.45 16 13 C 0.16 4.64 2.42 45.02 0.11 4.75 16 14 H 0.08 2.44 7.57 -2.39 -0.02 2.42 16 15 C -0.13 -4.63 5.65 30.67 0.17 -4.46 16 16 C 0.12 5.45 4.20 86.36 0.36 5.81 16 17 N -0.61 -27.76 2.73 -676.03 -1.85 -29.60 16 18 C -0.23 -12.66 9.00 84.03 0.76 -11.91 16 19 H 0.07 4.10 6.45 -2.91 -0.02 4.08 16 20 C -0.03 -1.75 5.26 84.86 0.45 -1.30 16 21 N -0.96 -59.80 13.97 21.65 0.30 -59.50 16 22 Si 0.93 47.60 24.34 68.60 1.67 49.27 16 23 H -0.28 -13.78 6.42 99.48 0.64 -13.14 16 24 H -0.27 -13.33 6.90 99.48 0.69 -12.64 16 25 H -0.31 -16.24 7.11 99.48 0.71 -15.53 16 26 C 0.16 5.72 3.48 44.83 0.16 5.88 16 27 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 28 C -0.13 -4.20 7.95 71.98 0.57 -3.63 16 29 C -0.12 -3.19 4.81 30.53 0.15 -3.05 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.20 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.42 7.42 8.59 -92.71 -0.80 6.62 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.02 1.03 7.16 -2.39 -0.02 1.02 16 38 H 0.05 2.51 4.60 -2.39 -0.01 2.50 16 39 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 40 H 0.04 1.52 7.63 -2.39 -0.02 1.50 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.62 7.44 -2.39 -0.02 1.60 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -75.19 367.54 4.77 -70.42 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.17 Total: 8.26 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.94 Total: 9.74 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -4.34 Total: -114.69 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.78 Total: -16.67 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.56 Total: -6.33 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.67 Total: 49.27 kcal Total: -75.19 4.77 -70.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947436735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.019 kcal (2) G-P(sol) polarization free energy of solvation -75.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds