Wall clock time and date at job start Wed Apr 1 2020 01:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30020 * 127.34158 * 2 1 4 4 O 1.20652 * 112.30380 * 180.29964 * 3 2 1 5 5 C 1.33491 * 113.15809 * 359.71309 * 4 3 2 6 6 C 1.50705 * 126.83207 * 179.97438 * 5 4 3 7 7 F 1.39895 * 109.46895 * 120.02231 * 6 5 4 8 8 F 1.39893 * 109.46984 * 240.02584 * 6 5 4 9 9 C 1.37362 * 106.34127 * 359.97438 * 5 4 3 10 10 C 1.47403 * 128.56457 * 179.97438 * 9 5 4 11 11 O 1.21608 * 119.99808 * 90.00041 * 10 9 5 12 12 N 1.34776 * 120.00128 * 270.00334 * 10 9 5 13 13 C 1.46499 * 119.99950 * 179.72497 * 12 10 9 14 14 H 1.09005 * 109.45842 * 325.30198 * 13 12 10 15 15 C 1.53041 * 109.46022 * 85.27618 * 13 12 10 16 16 C 1.53186 * 109.31267 * 58.65323 * 15 13 12 17 17 N 1.46928 * 108.77444 * 54.63661 * 16 15 13 18 18 C 1.36939 * 120.62948 * 126.41174 * 17 16 15 19 19 H 1.08002 * 120.00273 * 209.01590 * 18 17 16 20 20 C 1.38817 * 120.00187 * 29.01584 * 18 17 16 21 21 N 1.31616 * 119.99772 * 15.01227 * 20 18 17 22 22 Si 1.86797 * 120.00035 * 195.01505 * 20 18 17 23 23 H 1.48493 * 109.47178 * 89.99846 * 22 20 18 24 24 H 1.48501 * 109.47102 * 210.00218 * 22 20 18 25 25 H 1.48503 * 109.47154 * 329.99837 * 22 20 18 26 26 C 1.46925 * 118.73797 * 306.38937 * 17 16 15 27 27 H 1.08995 * 109.58751 * 293.82184 * 26 17 16 28 28 C 1.53007 * 109.58357 * 173.39533 * 26 17 16 29 29 C 1.53041 * 109.45886 * 205.34475 * 13 12 10 30 30 H 1.08995 * 109.47469 * 270.15136 * 1 2 3 31 31 H 1.08997 * 109.46865 * 30.14932 * 1 2 3 32 32 H 1.08997 * 109.47123 * 150.14767 * 1 2 3 33 33 H 1.09000 * 109.46642 * 0.02562 * 6 5 4 34 34 H 0.97004 * 119.99713 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.49666 * 178.60852 * 15 13 12 36 36 H 1.09008 * 109.49344 * 298.70149 * 15 13 12 37 37 H 1.09000 * 109.58669 * 174.42086 * 16 15 13 38 38 H 1.08992 * 109.58862 * 294.70316 * 16 15 13 39 39 H 0.97003 * 120.00091 * 179.97438 * 21 20 18 40 40 H 1.08999 * 109.46591 * 60.00246 * 28 26 17 41 41 H 1.09004 * 109.46595 * 179.97438 * 28 26 17 42 42 H 1.08996 * 109.47130 * 300.00031 * 28 26 17 43 43 H 1.09003 * 109.50125 * 61.29712 * 29 13 12 44 44 H 1.09003 * 109.49247 * 181.39264 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0058 5 6 3.6494 -0.6008 -0.0047 6 6 4.9712 -1.3248 -0.0112 7 9 5.0698 -2.1256 1.1316 8 9 5.0568 -2.1287 -1.1529 9 6 2.3991 -1.1697 0.0037 10 6 2.0400 -2.5993 0.0078 11 8 1.8982 -3.1875 1.0626 12 7 1.8688 -3.2544 -1.1575 13 6 1.5177 -4.6767 -1.1535 14 1 2.0058 -5.1688 -0.3121 15 6 0.0004 -4.8270 -1.0218 16 6 -0.6832 -4.1051 -2.1872 17 7 -0.1333 -4.6183 -3.4493 18 6 -0.9624 -5.0999 -4.4270 19 1 -0.6125 -5.8667 -5.1024 20 6 -2.2526 -4.6027 -4.5499 21 7 -2.5875 -3.4843 -3.9423 22 14 -3.5134 -5.5211 -5.5777 23 1 -4.2365 -6.4945 -4.7205 24 1 -4.4818 -4.5538 -6.1537 25 1 -2.8243 -6.2450 -6.6760 26 6 1.3232 -4.6044 -3.6427 27 1 1.6758 -3.5741 -3.6892 28 6 1.6747 -5.3291 -4.9436 29 6 1.9843 -5.3207 -2.4610 30 1 -0.3634 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5161 32 1 -0.3633 -0.8913 -0.5115 33 1 5.7834 -0.5980 -0.0168 34 1 1.9822 -2.7852 -1.9989 35 1 -0.2637 -5.8843 -1.0436 36 1 -0.3281 -4.3888 -0.0793 37 1 -1.7566 -4.2919 -2.1536 38 1 -0.4963 -3.0338 -2.1135 39 1 -3.4890 -3.1366 -4.0286 40 1 1.1931 -4.8253 -5.7817 41 1 2.7554 -5.3173 -5.0854 42 1 1.3260 -6.3604 -4.8906 43 1 3.0678 -5.2340 -2.5430 44 1 1.7015 -6.3734 -2.4692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947436736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:04 Heat of formation + Delta-G solvation = -51.118956 kcal Electronic energy + Delta-G solvation = -31971.672882 eV Core-core repulsion = 27371.002845 eV Total energy + Delta-G solvation = -4600.670037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.45755 -47.46327 -45.22207 -39.85187 -37.73715 -34.83949 -34.38508 -33.24141 -32.37856 -31.25469 -29.72270 -28.94342 -27.31542 -26.44552 -25.18337 -24.48423 -22.12673 -21.46351 -20.75449 -20.58472 -18.76764 -18.55681 -18.33138 -17.77067 -17.35689 -17.29133 -16.46682 -15.88036 -15.35506 -15.16372 -14.67789 -14.30197 -14.07031 -13.94301 -13.79213 -13.78089 -13.67235 -13.46011 -13.35130 -13.17033 -12.85075 -12.82490 -12.50706 -11.92123 -11.85544 -11.50117 -11.48659 -11.25050 -11.04454 -10.74155 -10.68923 -10.47492 -10.26450 -10.16685 -10.16164 -10.12008 -9.92434 -9.74640 -9.35356 -8.76019 -8.50342 -6.69113 -5.82368 -3.26295 0.72140 1.63674 1.98041 2.42669 3.18158 3.34751 3.42157 3.42604 3.50033 3.63293 3.89911 4.18795 4.38548 4.43110 4.44974 4.82162 4.87659 5.26020 5.29859 5.31832 5.35831 5.43078 5.54765 5.55638 5.62098 5.92685 5.96911 6.05668 6.15695 6.26958 6.30998 6.40451 6.50668 6.54672 6.67371 6.85979 6.95005 7.00824 7.31567 7.61625 7.62831 7.78234 7.81634 8.23358 8.41556 9.17559 9.80775 10.36942 11.25880 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.003696 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.039269 B = 7573.839379 C = 8396.720943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.062 3.938 3 N -0.339 5.339 4 O 0.122 5.878 5 C -0.091 4.091 6 C 0.363 3.637 7 F -0.175 7.175 8 F -0.176 7.176 9 C -0.179 4.179 10 C 0.588 3.412 11 O -0.522 6.522 12 N -0.693 5.693 13 C 0.154 3.846 14 H 0.076 0.924 15 C -0.155 4.155 16 C 0.175 3.825 17 N -0.586 5.586 18 C -0.250 4.250 19 H 0.070 0.930 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.168 3.832 27 H 0.019 0.981 28 C -0.137 4.137 29 C -0.139 4.139 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.144 0.856 34 H 0.404 0.596 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.016 0.984 39 H 0.253 0.747 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.920 5.504 6.766 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 N -0.041 5.041 4 O 0.055 5.945 5 C -0.155 4.155 6 C 0.307 3.693 7 F -0.156 7.156 8 F -0.157 7.157 9 C -0.186 4.186 10 C 0.371 3.629 11 O -0.399 6.399 12 N -0.344 5.344 13 C 0.050 3.950 14 H 0.094 0.906 15 C -0.195 4.195 16 C 0.049 3.951 17 N -0.309 5.309 18 C -0.379 4.379 19 H 0.088 0.912 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.061 3.939 27 H 0.036 0.964 28 C -0.194 4.194 29 C -0.179 4.179 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.162 0.838 34 H 0.240 0.760 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.433 6.406 7.476 16.655 hybrid contribution -0.846 -0.951 -0.860 1.536 sum 12.587 5.455 6.616 15.230 Atomic orbital electron populations 1.20354 0.84044 1.05371 1.04252 1.24936 0.99142 0.85652 1.00229 1.73605 0.88826 1.22977 1.18716 1.84535 1.21887 1.20714 1.67408 1.24907 0.97116 0.85821 1.07692 1.19180 0.92227 0.85291 0.72556 1.93132 1.96525 1.75744 1.50200 1.93117 1.96664 1.75624 1.50309 1.22384 0.92231 0.96603 1.07368 1.16799 0.77874 0.83410 0.84852 1.90833 1.50774 1.67262 1.30986 1.46098 1.68451 1.12125 1.07714 1.21009 0.96650 0.78864 0.98442 0.90615 1.22584 0.94119 1.02120 1.00649 1.20721 0.98846 0.93598 0.81896 1.44130 0.99136 1.73318 1.14362 1.19188 0.93823 1.14623 1.10308 0.91202 1.25063 0.99334 0.95762 0.99345 1.70000 1.19018 1.19001 1.46802 0.86317 0.81597 0.79033 0.79963 1.21503 1.21853 1.20476 1.20386 0.86265 0.95128 0.92131 0.96357 1.21799 0.98420 1.00964 0.98235 1.22376 0.99203 1.01040 0.95236 0.89289 0.89430 0.88634 0.83846 0.75964 0.91484 0.92737 0.89386 0.96582 0.93723 0.91927 0.94258 0.92638 0.92374 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.49 36.01 0.38 -0.64 16 2 C 0.06 0.85 7.59 -79.76 -0.61 0.25 16 3 N -0.34 -4.56 12.01 34.78 0.42 -4.14 16 4 O 0.12 1.43 11.06 18.66 0.21 1.64 16 5 C -0.09 -1.08 6.98 -34.62 -0.24 -1.32 16 6 C 0.36 3.36 5.68 36.01 0.20 3.56 16 7 F -0.18 -2.06 17.32 2.25 0.04 -2.02 16 8 F -0.18 -1.91 17.32 2.25 0.04 -1.87 16 9 C -0.18 -2.58 6.24 -102.89 -0.64 -3.22 16 10 C 0.59 9.73 7.60 -12.53 -0.10 9.63 16 11 O -0.52 -10.17 16.77 5.27 0.09 -10.08 16 12 N -0.69 -11.09 4.26 -54.85 -0.23 -11.32 16 13 C 0.15 2.58 2.78 -67.89 -0.19 2.39 16 14 H 0.08 1.28 7.57 -51.93 -0.39 0.89 16 15 C -0.15 -2.92 5.77 -26.61 -0.15 -3.07 16 16 C 0.18 3.91 5.03 -3.71 -0.02 3.89 16 17 N -0.59 -13.36 2.99 -164.78 -0.49 -13.85 16 18 C -0.25 -6.35 8.60 -15.06 -0.13 -6.48 16 19 H 0.07 1.75 6.21 -52.49 -0.33 1.42 16 20 C 0.00 0.09 4.96 -17.43 -0.09 0.01 16 21 N -0.90 -24.97 11.14 55.49 0.62 -24.35 16 22 Si 0.90 21.01 29.58 -169.99 -5.03 15.98 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.17 3.15 3.20 -67.60 -0.22 2.93 16 27 H 0.02 0.36 6.64 -51.93 -0.34 0.01 16 28 C -0.14 -2.39 7.94 37.16 0.30 -2.09 16 29 C -0.14 -2.23 5.07 -26.61 -0.13 -2.37 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 6.32 6.85 -40.82 -0.28 6.04 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 38 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 39 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.06 1.19 7.62 -51.93 -0.40 0.80 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.98 7.45 -51.93 -0.39 0.60 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -30.53 369.43 -6.20 -36.73 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.78 Total: 4.26 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.64 Total: 3.46 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.31 Total: -53.67 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.29 Total: -8.45 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.53 -6.20 -36.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947436736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.388 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds