Wall clock time and date at job start Wed Apr 1 2020 01:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30020 * 127.34158 * 2 1 4 4 O 1.20652 * 112.30380 * 180.29964 * 3 2 1 5 5 C 1.33491 * 113.15809 * 359.71309 * 4 3 2 6 6 C 1.50705 * 126.83207 * 179.97438 * 5 4 3 7 7 F 1.39895 * 109.46895 * 120.02231 * 6 5 4 8 8 F 1.39893 * 109.46984 * 240.02584 * 6 5 4 9 9 C 1.37362 * 106.34127 * 359.97438 * 5 4 3 10 10 C 1.47403 * 128.56457 * 179.97438 * 9 5 4 11 11 O 1.21608 * 119.99808 * 90.00041 * 10 9 5 12 12 N 1.34776 * 120.00128 * 270.00334 * 10 9 5 13 13 C 1.46499 * 119.99950 * 179.72497 * 12 10 9 14 14 H 1.09005 * 109.45842 * 325.30198 * 13 12 10 15 15 C 1.53041 * 109.46022 * 85.27618 * 13 12 10 16 16 C 1.53186 * 109.31267 * 58.65323 * 15 13 12 17 17 N 1.46928 * 108.77444 * 54.63661 * 16 15 13 18 18 C 1.36939 * 120.62948 * 126.41174 * 17 16 15 19 19 H 1.08002 * 120.00273 * 209.01590 * 18 17 16 20 20 C 1.38817 * 120.00187 * 29.01584 * 18 17 16 21 21 N 1.31616 * 119.99772 * 15.01227 * 20 18 17 22 22 Si 1.86797 * 120.00035 * 195.01505 * 20 18 17 23 23 H 1.48493 * 109.47178 * 89.99846 * 22 20 18 24 24 H 1.48501 * 109.47102 * 210.00218 * 22 20 18 25 25 H 1.48503 * 109.47154 * 329.99837 * 22 20 18 26 26 C 1.46925 * 118.73797 * 306.38937 * 17 16 15 27 27 H 1.08995 * 109.58751 * 293.82184 * 26 17 16 28 28 C 1.53007 * 109.58357 * 173.39533 * 26 17 16 29 29 C 1.53041 * 109.45886 * 205.34475 * 13 12 10 30 30 H 1.08995 * 109.47469 * 270.15136 * 1 2 3 31 31 H 1.08997 * 109.46865 * 30.14932 * 1 2 3 32 32 H 1.08997 * 109.47123 * 150.14767 * 1 2 3 33 33 H 1.09000 * 109.46642 * 0.02562 * 6 5 4 34 34 H 0.97004 * 119.99713 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.49666 * 178.60852 * 15 13 12 36 36 H 1.09008 * 109.49344 * 298.70149 * 15 13 12 37 37 H 1.09000 * 109.58669 * 174.42086 * 16 15 13 38 38 H 1.08992 * 109.58862 * 294.70316 * 16 15 13 39 39 H 0.97003 * 120.00091 * 179.97438 * 21 20 18 40 40 H 1.08999 * 109.46591 * 60.00246 * 28 26 17 41 41 H 1.09004 * 109.46595 * 179.97438 * 28 26 17 42 42 H 1.08996 * 109.47130 * 300.00031 * 28 26 17 43 43 H 1.09003 * 109.50125 * 61.29712 * 29 13 12 44 44 H 1.09003 * 109.49247 * 181.39264 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0058 5 6 3.6494 -0.6008 -0.0047 6 6 4.9712 -1.3248 -0.0112 7 9 5.0698 -2.1256 1.1316 8 9 5.0568 -2.1287 -1.1529 9 6 2.3991 -1.1697 0.0037 10 6 2.0400 -2.5993 0.0078 11 8 1.8982 -3.1875 1.0626 12 7 1.8688 -3.2544 -1.1575 13 6 1.5177 -4.6767 -1.1535 14 1 2.0058 -5.1688 -0.3121 15 6 0.0004 -4.8270 -1.0218 16 6 -0.6832 -4.1051 -2.1872 17 7 -0.1333 -4.6183 -3.4493 18 6 -0.9624 -5.0999 -4.4270 19 1 -0.6125 -5.8667 -5.1024 20 6 -2.2526 -4.6027 -4.5499 21 7 -2.5875 -3.4843 -3.9423 22 14 -3.5134 -5.5211 -5.5777 23 1 -4.2365 -6.4945 -4.7205 24 1 -4.4818 -4.5538 -6.1537 25 1 -2.8243 -6.2450 -6.6760 26 6 1.3232 -4.6044 -3.6427 27 1 1.6758 -3.5741 -3.6892 28 6 1.6747 -5.3291 -4.9436 29 6 1.9843 -5.3207 -2.4610 30 1 -0.3634 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5161 32 1 -0.3633 -0.8913 -0.5115 33 1 5.7834 -0.5980 -0.0168 34 1 1.9822 -2.7852 -1.9989 35 1 -0.2637 -5.8843 -1.0436 36 1 -0.3281 -4.3888 -0.0793 37 1 -1.7566 -4.2919 -2.1536 38 1 -0.4963 -3.0338 -2.1135 39 1 -3.4890 -3.1366 -4.0286 40 1 1.1931 -4.8253 -5.7817 41 1 2.7554 -5.3173 -5.0854 42 1 1.3260 -6.3604 -4.8906 43 1 3.0678 -5.2340 -2.5430 44 1 1.7015 -6.3734 -2.4692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947436736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:03 Heat of formation + Delta-G solvation = -69.340327 kcal Electronic energy + Delta-G solvation = -31972.463019 eV Core-core repulsion = 27371.002845 eV Total energy + Delta-G solvation = -4601.460175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.24684 -48.26643 -46.25672 -41.23798 -39.26308 -35.97543 -35.89580 -34.32007 -34.03482 -32.80464 -31.39017 -29.97233 -28.31640 -27.88457 -26.85373 -25.71761 -23.78095 -22.67277 -22.18958 -21.71669 -20.30819 -19.66041 -19.31344 -18.54668 -18.38493 -18.24742 -18.14363 -17.19132 -16.96261 -16.55842 -16.10868 -15.72328 -15.51156 -15.22461 -15.11401 -14.75595 -14.65747 -14.60193 -14.53760 -14.43305 -14.25065 -14.11574 -13.77281 -13.37011 -13.23043 -12.85952 -12.72520 -12.67113 -12.49802 -12.43752 -12.32138 -12.17266 -11.97226 -11.71161 -11.48166 -11.43430 -11.16203 -11.11986 -10.99063 -10.49295 -10.17544 -8.58385 -7.81022 -5.25768 -0.26596 0.56477 1.02469 1.18997 1.47686 1.50374 1.56861 1.97267 2.54124 2.68404 2.82979 2.91961 3.27935 3.34776 3.44148 3.62641 3.67442 3.71654 3.93694 3.94804 4.06460 4.17522 4.27761 4.42591 4.45627 4.55302 4.59395 4.65383 4.78625 4.91156 4.95048 4.96540 5.01765 5.10295 5.15562 5.41037 5.45173 5.54175 5.58133 5.75429 5.78631 6.30556 6.46318 6.81987 6.93047 7.21548 7.93486 8.44309 9.25040 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.003696 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.039269 B = 7573.839379 C = 8396.720943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.051 3.949 3 N -0.348 5.348 4 O 0.140 5.860 5 C -0.068 4.068 6 C 0.359 3.641 7 F -0.190 7.190 8 F -0.184 7.184 9 C -0.215 4.215 10 C 0.594 3.406 11 O -0.556 6.556 12 N -0.688 5.688 13 C 0.159 3.841 14 H 0.082 0.918 15 C -0.142 4.142 16 C 0.187 3.813 17 N -0.600 5.600 18 C -0.245 4.245 19 H 0.076 0.924 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 0.956 3.044 23 H -0.291 1.291 24 H -0.301 1.301 25 H -0.268 1.268 26 C 0.161 3.839 27 H 0.020 0.980 28 C -0.130 4.130 29 C -0.125 4.125 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.207 0.793 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.000 1.000 39 H 0.245 0.755 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.579 5.359 6.499 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 N -0.049 5.049 4 O 0.072 5.928 5 C -0.133 4.133 6 C 0.305 3.695 7 F -0.171 7.171 8 F -0.165 7.165 9 C -0.222 4.222 10 C 0.378 3.622 11 O -0.435 6.435 12 N -0.338 5.338 13 C 0.055 3.945 14 H 0.100 0.900 15 C -0.182 4.182 16 C 0.061 3.939 17 N -0.324 5.324 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.786 3.214 23 H -0.218 1.218 24 H -0.228 1.228 25 H -0.193 1.193 26 C 0.055 3.945 27 H 0.037 0.963 28 C -0.188 4.188 29 C -0.164 4.164 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.223 0.777 34 H 0.243 0.757 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.018 0.982 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.115 6.255 7.188 18.721 hybrid contribution -1.603 -0.873 -0.772 1.982 sum 14.512 5.381 6.416 16.755 Atomic orbital electron populations 1.20353 0.83669 1.04951 1.04892 1.25093 0.99667 0.85652 1.00498 1.73584 0.89293 1.22901 1.19153 1.84528 1.21171 1.20582 1.66476 1.25442 0.97581 0.85556 1.04770 1.19963 0.92334 0.85700 0.71545 1.93105 1.96462 1.76354 1.51153 1.93098 1.96576 1.76052 1.50786 1.22253 0.93792 0.95630 1.10528 1.16972 0.76855 0.84106 0.84230 1.90806 1.52287 1.68341 1.32022 1.46042 1.68051 1.11870 1.07846 1.20919 0.94728 0.79557 0.99303 0.89966 1.22396 0.95785 1.01385 0.98673 1.20411 0.96990 0.93094 0.83357 1.44344 1.00901 1.73184 1.13962 1.19499 0.94135 1.13968 1.09969 0.90685 1.25707 1.01148 0.96633 1.01078 1.70148 1.18743 1.20541 1.48741 0.85428 0.79462 0.77669 0.78868 1.21840 1.22789 1.19259 1.20631 0.83833 0.95843 0.94216 0.96254 1.21735 1.00621 1.00003 0.96407 1.22251 1.00664 1.00500 0.93022 0.88158 0.88234 0.90568 0.77672 0.75651 0.91505 0.93318 0.93232 0.98160 0.94562 0.94098 0.90600 0.93026 0.89283 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 10.49 71.24 0.75 -1.29 16 2 C 0.05 1.40 7.59 45.16 0.34 1.75 16 3 N -0.35 -8.89 12.01 -44.77 -0.54 -9.43 16 4 O 0.14 2.98 11.06 77.01 0.85 3.83 16 5 C -0.07 -1.46 6.98 25.48 0.18 -1.28 16 6 C 0.36 5.46 5.68 71.24 0.40 5.87 16 7 F -0.19 -4.01 17.32 44.97 0.78 -3.23 16 8 F -0.18 -3.43 17.32 44.97 0.78 -2.65 16 9 C -0.21 -6.03 6.24 -18.74 -0.12 -6.15 16 10 C 0.59 19.42 7.60 86.66 0.66 20.07 16 11 O -0.56 -21.61 16.77 -4.06 -0.07 -21.68 16 12 N -0.69 -21.47 4.26 -445.69 -1.90 -23.37 16 13 C 0.16 5.13 2.78 45.02 0.13 5.25 16 14 H 0.08 2.64 7.57 -2.38 -0.02 2.62 16 15 C -0.14 -5.42 5.77 30.67 0.18 -5.24 16 16 C 0.19 8.60 5.03 86.36 0.43 9.04 16 17 N -0.60 -27.39 2.99 -675.23 -2.02 -29.41 16 18 C -0.25 -12.51 8.60 84.03 0.72 -11.78 16 19 H 0.08 3.70 6.21 -2.91 -0.02 3.68 16 20 C -0.05 -2.72 4.96 84.86 0.42 -2.29 16 21 N -0.93 -53.44 11.14 21.65 0.24 -53.20 16 22 Si 0.96 43.85 29.58 68.60 2.03 45.88 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.16 5.76 3.20 44.98 0.14 5.91 16 27 H 0.02 0.72 6.64 -2.39 -0.02 0.70 16 28 C -0.13 -4.25 7.94 71.98 0.57 -3.68 16 29 C -0.13 -3.70 5.07 30.67 0.16 -3.54 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.21 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.41 12.35 6.85 -92.71 -0.64 11.71 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.05 2.66 6.06 -2.39 -0.01 2.65 16 38 H 0.00 0.02 7.74 -2.39 -0.02 0.00 16 39 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.04 1.49 7.62 -2.39 -0.02 1.48 16 41 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 42 H 0.05 1.71 7.45 -2.39 -0.02 1.69 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -67.66 369.43 5.54 -62.12 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.42 Total: 18.52 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 4.97 Total: 12.63 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.22 Total: -115.40 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.78 Total: -17.85 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 1.56 Total: -5.89 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.66 5.54 -62.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947436736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.224 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds