Wall clock time and date at job start Wed Apr 1 2020 01:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30013 * 127.33585 * 2 1 4 4 O 1.20655 * 112.30468 * 179.68673 * 3 2 1 5 5 C 1.33498 * 113.15326 * 0.49991 * 4 3 2 6 6 C 1.50700 * 126.82702 * 179.78129 * 5 4 3 7 7 F 1.39902 * 109.47032 * 239.68983 * 6 5 4 8 8 F 1.39901 * 109.46921 * 119.69021 * 6 5 4 9 9 C 1.37357 * 106.34087 * 359.52345 * 5 4 3 10 10 C 1.47403 * 128.56491 * 180.22568 * 9 5 4 11 11 O 1.21606 * 119.99665 * 89.99773 * 10 9 5 12 12 N 1.34769 * 119.99865 * 270.00038 * 10 9 5 13 13 C 1.46506 * 120.00022 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.49220 * 324.93030 * 13 12 10 15 15 C 1.53187 * 109.49550 * 84.99788 * 13 12 10 16 16 N 1.46923 * 108.77739 * 65.32089 * 15 13 12 17 17 C 1.36941 * 120.63015 * 233.58439 * 16 15 13 18 18 H 1.08000 * 120.00052 * 152.22987 * 17 16 15 19 19 C 1.38811 * 119.99783 * 332.22733 * 17 16 15 20 20 N 1.31624 * 120.00042 * 159.79672 * 19 17 16 21 21 Si 1.86801 * 120.00095 * 339.79774 * 19 17 16 22 22 H 1.48498 * 109.47227 * 92.70648 * 21 19 17 23 23 H 1.48507 * 109.46816 * 212.70685 * 21 19 17 24 24 H 1.48498 * 109.46840 * 332.70461 * 21 19 17 25 25 C 1.46924 * 118.74155 * 53.60210 * 16 15 13 26 26 C 1.53189 * 108.77649 * 306.39783 * 25 16 15 27 27 C 1.53040 * 109.31653 * 54.63146 * 26 25 16 28 28 H 1.09005 * 109.45747 * 58.65487 * 27 26 25 29 29 C 1.52994 * 109.46107 * 178.61920 * 27 26 25 30 30 H 1.08997 * 109.46510 * 270.02481 * 1 2 3 31 31 H 1.09003 * 109.47069 * 30.02288 * 1 2 3 32 32 H 1.08997 * 109.46838 * 150.02561 * 1 2 3 33 33 H 1.09002 * 109.47339 * 359.69334 * 6 5 4 34 34 H 0.97005 * 120.00315 * 359.97438 * 12 10 9 35 35 H 1.09008 * 109.58202 * 185.10307 * 15 13 12 36 36 H 1.09002 * 109.58802 * 305.53023 * 15 13 12 37 37 H 0.96999 * 119.99810 * 180.02562 * 20 19 17 38 38 H 1.09002 * 109.58596 * 66.18149 * 25 16 15 39 39 H 1.08996 * 109.58820 * 186.46267 * 25 16 15 40 40 H 1.08998 * 109.49928 * 174.58960 * 26 25 16 41 41 H 1.09002 * 109.49333 * 294.64670 * 26 25 16 42 42 H 1.08998 * 109.47042 * 180.02562 * 29 27 26 43 43 H 1.09008 * 109.47025 * 300.06501 * 29 27 26 44 44 H 1.08994 * 109.47545 * 60.06525 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0061 5 6 3.6494 -0.6007 0.0006 6 6 4.9713 -1.3245 0.0010 7 9 5.0638 -2.1271 -1.1411 8 9 5.0632 -2.1267 1.1435 9 6 2.3992 -1.1696 0.0004 10 6 2.0401 -2.5992 -0.0001 11 8 1.8920 -3.1893 1.0529 12 7 1.8760 -3.2523 -1.1675 13 6 1.5185 -4.6731 -1.1680 14 1 2.0021 -5.1701 -0.3272 15 6 -0.0013 -4.8180 -1.0425 16 7 -0.6308 -4.2573 -2.2459 17 6 -1.6071 -3.3027 -2.1423 18 1 -1.7510 -2.5887 -2.9397 19 6 -2.4118 -3.2527 -1.0123 20 7 -3.0592 -2.1463 -0.7138 21 14 -2.5758 -4.7558 0.0847 22 1 -1.5684 -4.6863 1.1735 23 1 -3.9389 -4.7927 0.6731 24 1 -2.3508 -5.9831 -0.7204 25 6 -0.1932 -4.7406 -3.5626 26 6 1.3288 -4.5966 -3.6598 27 6 1.9819 -5.3159 -2.4773 28 1 1.6938 -6.3671 -2.4877 29 6 3.5036 -5.2035 -2.5898 30 1 -0.3632 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 5.7836 -0.5977 0.0012 34 1 1.9938 -2.7816 -2.0074 35 1 -0.2615 -5.8726 -0.9517 36 1 -0.3486 -4.2766 -0.1625 37 1 -3.6212 -2.1113 0.0760 38 1 -0.4691 -5.7889 -3.6772 39 1 -0.6690 -4.1499 -4.3453 40 1 1.6773 -5.0397 -4.5927 41 1 1.5965 -3.5402 -3.6366 42 1 3.9689 -5.7162 -1.7479 43 1 3.8338 -5.6614 -3.5223 44 1 3.7921 -4.1525 -2.5789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966904832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:20 Heat of formation + Delta-G solvation = -47.998791 kcal Electronic energy + Delta-G solvation = -32917.157745 eV Core-core repulsion = 28316.623008 eV Total energy + Delta-G solvation = -4600.534737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.36736 -47.37431 -44.99211 -39.85477 -37.82828 -34.54862 -34.36248 -33.14907 -32.78665 -31.42028 -29.81567 -28.52831 -27.72734 -27.03137 -24.60195 -23.88792 -22.71929 -21.28246 -21.12434 -20.43515 -18.96181 -18.43862 -18.16062 -17.66821 -17.21311 -17.16212 -16.85447 -15.72440 -15.50545 -15.16961 -14.55102 -14.26933 -14.22051 -13.78687 -13.71131 -13.66895 -13.55619 -13.41691 -13.27292 -12.99616 -12.93271 -12.77057 -12.40032 -12.18482 -12.05407 -11.72427 -11.67624 -11.52811 -11.19046 -11.15177 -10.64814 -10.58455 -10.33429 -10.12558 -9.94115 -9.87613 -9.81375 -9.69467 -9.47027 -8.82914 -8.49770 -6.99643 -5.99976 -3.35771 0.91498 1.91094 2.16177 2.66146 3.35018 3.38143 3.49204 3.49889 3.60177 3.81672 4.19302 4.32893 4.51671 4.52845 4.64171 4.89218 4.94262 5.03442 5.09430 5.15229 5.17387 5.38348 5.68485 5.70708 5.73173 5.84656 5.93910 5.95740 6.05421 6.05908 6.08030 6.18387 6.28014 6.33554 6.48172 6.56929 6.61574 6.69731 6.76446 6.88314 7.77299 7.91476 8.06285 8.26887 8.44129 8.88746 9.67926 10.05518 11.14811 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.005749 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.015010 B = 4869.200717 C = 6202.797786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.071 3.929 3 N -0.344 5.344 4 O 0.117 5.883 5 C -0.100 4.100 6 C 0.364 3.636 7 F -0.179 7.179 8 F -0.176 7.176 9 C -0.174 4.174 10 C 0.592 3.408 11 O -0.523 6.523 12 N -0.681 5.681 13 C 0.134 3.866 14 H 0.083 0.917 15 C 0.113 3.887 16 N -0.602 5.602 17 C -0.260 4.260 18 H 0.085 0.915 19 C 0.031 3.969 20 N -0.903 5.903 21 Si 0.871 3.129 22 H -0.284 1.284 23 H -0.304 1.304 24 H -0.272 1.272 25 C 0.146 3.854 26 C -0.131 4.131 27 C -0.093 4.093 28 H 0.081 0.919 29 C -0.145 4.145 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.401 0.599 35 H 0.034 0.966 36 H 0.081 0.919 37 H 0.262 0.738 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.693 0.634 -2.951 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 N -0.048 5.048 4 O 0.051 5.949 5 C -0.165 4.165 6 C 0.309 3.691 7 F -0.160 7.160 8 F -0.157 7.157 9 C -0.182 4.182 10 C 0.374 3.626 11 O -0.399 6.399 12 N -0.331 5.331 13 C 0.028 3.972 14 H 0.101 0.899 15 C -0.014 4.014 16 N -0.326 5.326 17 C -0.388 4.388 18 H 0.103 0.897 19 C -0.169 4.169 20 N -0.546 5.546 21 Si 0.702 3.298 22 H -0.212 1.212 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.020 3.980 26 C -0.170 4.170 27 C -0.112 4.112 28 H 0.099 0.901 29 C -0.202 4.202 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.237 0.763 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.228 1.552 -2.119 16.439 hybrid contribution -0.353 -1.408 0.402 1.506 sum 15.875 0.145 -1.717 15.968 Atomic orbital electron populations 1.20428 0.82749 1.06461 1.04357 1.25191 0.99582 0.85283 0.98901 1.73603 0.88737 1.23033 1.19408 1.84525 1.22100 1.20568 1.67685 1.24831 0.96921 0.86066 1.08642 1.19141 0.92360 0.85155 0.72435 1.93091 1.96651 1.75796 1.50450 1.93130 1.96611 1.75692 1.50249 1.22377 0.92154 0.96650 1.06980 1.16729 0.77681 0.83427 0.84716 1.90833 1.50700 1.67143 1.31261 1.45697 1.68421 1.11421 1.07549 1.21604 0.97799 0.79994 0.97756 0.89904 1.21793 0.90235 0.97400 0.91974 1.44311 1.42383 1.46539 0.99327 1.18835 1.08421 1.05732 1.05781 0.89736 1.25219 0.97049 0.96727 0.97892 1.69799 1.32894 1.24998 1.26921 0.87113 0.76027 0.85695 0.80977 1.21160 1.23202 1.19674 1.20959 0.91438 0.97131 0.88502 1.22081 0.98368 0.99916 0.96637 1.21313 0.95086 1.00162 0.94684 0.90099 1.21846 0.95292 1.01963 1.01149 0.89729 0.89921 0.86699 0.84024 0.76283 0.94791 0.90080 0.92813 0.95888 0.91801 0.92164 0.92351 0.92953 0.92847 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.49 36.01 0.38 -1.11 16 2 C 0.07 1.23 7.59 -79.77 -0.61 0.62 16 3 N -0.34 -5.47 12.01 34.78 0.42 -5.05 16 4 O 0.12 1.60 11.06 18.64 0.21 1.80 16 5 C -0.10 -1.35 6.98 -34.63 -0.24 -1.59 16 6 C 0.36 3.75 5.68 36.01 0.20 3.95 16 7 F -0.18 -2.00 17.32 2.25 0.04 -1.96 16 8 F -0.18 -2.27 17.32 2.25 0.04 -2.24 16 9 C -0.17 -2.95 6.24 -102.89 -0.64 -3.59 16 10 C 0.59 11.26 7.60 -12.53 -0.10 11.16 16 11 O -0.52 -11.77 16.77 5.27 0.09 -11.68 16 12 N -0.68 -11.70 4.25 -54.77 -0.23 -11.93 16 13 C 0.13 2.33 2.24 -67.81 -0.15 2.18 16 14 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 15 C 0.11 2.39 3.80 -3.72 -0.01 2.38 16 16 N -0.60 -13.08 2.68 -172.32 -0.46 -13.54 16 17 C -0.26 -6.67 10.03 -15.06 -0.15 -6.82 16 18 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 19 C 0.03 0.83 5.24 -17.43 -0.09 0.74 16 20 N -0.90 -25.74 13.97 55.49 0.78 -24.96 16 21 Si 0.87 22.22 24.34 -169.99 -4.14 18.08 16 22 H -0.28 -7.39 6.62 56.52 0.37 -7.01 16 23 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 24 H -0.27 -6.78 6.63 56.52 0.37 -6.41 16 25 C 0.15 2.57 6.52 -3.71 -0.02 2.54 16 26 C -0.13 -1.84 5.19 -26.61 -0.14 -1.97 16 27 C -0.09 -1.30 2.48 -90.58 -0.22 -1.52 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 C -0.15 -1.70 9.05 37.15 0.34 -1.37 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.11 2.46 8.14 -51.93 -0.42 2.03 16 33 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.40 6.38 6.62 -40.82 -0.27 6.11 16 35 H 0.03 0.72 7.06 -51.92 -0.37 0.36 16 36 H 0.08 2.01 4.52 -51.93 -0.23 1.78 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.84 6.40 -51.93 -0.33 0.50 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.06 0.67 7.54 -51.93 -0.39 0.28 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -31.04 366.51 -5.02 -36.06 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.82 Total: 4.29 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.46 Total: 5.60 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.50 Total: -55.49 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.29 Total: -9.88 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.08 Total: -4.19 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.14 Total: 18.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.04 -5.02 -36.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966904832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.935 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds