Wall clock time and date at job start Wed Apr 1 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47315 * 2 1 4 4 N 1.46506 * 109.47139 * 239.99659 * 2 1 3 5 5 C 1.34780 * 119.99376 * 84.99959 * 4 2 1 6 6 O 1.21582 * 120.00230 * 0.02562 * 5 4 2 7 7 C 1.47582 * 119.99866 * 179.97438 * 5 4 2 8 8 C 1.38654 * 120.41377 * 5.93818 * 7 5 4 9 9 C 1.39257 * 120.71791 * 179.71691 * 8 7 5 10 10 F 1.35098 * 119.43412 * 180.28589 * 9 8 7 11 11 C 1.36556 * 121.12925 * 0.55905 * 9 8 7 12 12 C 1.40283 * 119.91817 * 359.72583 * 11 9 8 13 13 C 1.40711 * 122.07361 * 179.97438 * 12 11 9 14 14 C 1.36237 * 118.66891 * 180.02562 * 13 12 11 15 15 N 1.32531 * 121.83755 * 0.02562 * 14 13 12 16 16 C 1.31327 * 122.71635 * 359.96071 * 15 14 13 17 17 C 1.40104 * 119.93184 * 0.03953 * 16 15 14 18 18 C 1.53001 * 109.47329 * 120.00206 * 2 1 3 19 19 C 1.53941 * 113.74172 * 281.82045 * 18 2 1 20 20 N 1.47815 * 86.03913 * 222.08142 * 19 18 2 21 21 C 1.36932 * 134.45650 * 204.64038 * 20 19 18 22 22 H 1.08006 * 119.99567 * 174.72886 * 21 20 19 23 23 C 1.38811 * 120.00410 * 354.73185 * 21 20 19 24 24 N 1.31618 * 119.99621 * 4.99711 * 23 21 20 25 25 Si 1.86797 * 120.00045 * 185.00531 * 23 21 20 26 26 H 1.48501 * 109.47464 * 94.99673 * 25 23 21 27 27 H 1.48496 * 109.47158 * 214.99363 * 25 23 21 28 28 H 1.48498 * 109.47137 * 334.99517 * 25 23 21 29 29 C 1.47581 * 91.04818 * 24.54755 * 20 19 18 30 30 H 1.09008 * 109.47319 * 175.01894 * 1 2 3 31 31 H 1.09002 * 109.47557 * 55.01237 * 1 2 3 32 32 H 1.08999 * 109.47049 * 295.01064 * 1 2 3 33 33 H 0.96993 * 120.00233 * 265.00413 * 4 2 1 34 34 H 1.08000 * 119.64170 * 359.97438 * 8 7 5 35 35 H 1.07998 * 120.03722 * 179.74226 * 11 9 8 36 36 H 1.07998 * 120.66731 * 0.04237 * 13 12 11 37 37 H 1.08005 * 119.08715 * 180.02562 * 14 13 12 38 38 H 1.08005 * 120.03180 * 180.02562 * 16 15 14 39 39 H 1.09006 * 112.94409 * 53.40866 * 18 2 1 40 40 H 1.08999 * 113.77044 * 336.34321 * 19 18 2 41 41 H 1.08999 * 113.77352 * 107.74084 * 19 18 2 42 42 H 0.97007 * 119.99770 * 180.02562 * 24 23 21 43 43 H 1.08998 * 113.77164 * 221.15447 * 29 20 19 44 44 H 1.09004 * 113.87104 * 89.76758 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4116 7 6 2.6395 -0.7138 -3.5620 8 6 2.8555 -2.0833 -3.5429 9 6 3.3145 -2.7469 -4.6779 10 9 3.5107 -4.0828 -4.6321 11 6 3.5750 -2.0696 -5.8347 12 6 3.3749 -0.6824 -5.8936 13 6 3.6291 0.0603 -7.0614 14 6 3.4111 1.4050 -7.0411 15 7 2.9694 2.0254 -5.9565 16 6 2.7115 1.3950 -4.8336 17 6 2.9029 0.0096 -4.7498 18 6 2.0400 -0.7213 1.2492 19 6 1.9745 0.1329 2.5282 20 7 3.3099 -0.4180 2.8416 21 6 4.0194 -0.6145 3.9962 22 1 4.9704 -1.1256 3.9651 23 6 3.5166 -0.1569 5.2064 24 7 2.3150 0.3775 5.2597 25 14 4.5453 -0.2994 6.7590 26 1 5.2766 0.9728 6.9869 27 1 3.6578 -0.5744 7.9173 28 1 5.5195 -1.4099 6.6072 29 6 3.5701 -0.6731 1.4115 30 1 -0.3634 -1.0238 -0.0892 31 1 -0.3634 0.5893 -0.8419 32 1 -0.3633 0.4345 0.9313 33 1 2.2489 -1.6318 -1.1526 34 1 2.6618 -2.6420 -2.6392 35 1 3.9344 -2.6014 -6.7033 36 1 3.9895 -0.4258 -7.9558 37 1 3.6036 1.9816 -7.9339 38 1 2.3525 1.9440 -3.9756 39 1 1.6175 -1.7193 1.3659 40 1 1.9753 1.2065 2.3401 41 1 1.1954 -0.1776 3.2245 42 1 1.9637 0.6976 6.1054 43 1 4.0627 -1.6260 1.2177 44 1 4.0408 0.1622 0.8929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969684020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:47 Heat of formation + Delta-G solvation = 35.843091 kcal Electronic energy + Delta-G solvation = -28942.196854 eV Core-core repulsion = 24776.066999 eV Total energy + Delta-G solvation = -4166.129855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.42976 -41.42354 -39.82229 -38.17677 -37.32281 -35.08087 -33.46350 -32.26173 -31.24242 -30.98992 -29.63713 -27.52391 -25.48305 -24.77429 -24.21913 -23.88167 -23.47415 -21.42757 -20.77531 -19.44909 -18.61772 -18.17751 -17.68363 -16.87552 -16.55895 -16.44384 -16.18118 -15.82423 -15.44842 -15.13096 -14.98541 -14.80116 -14.31413 -14.06175 -13.90421 -13.70535 -13.43502 -13.38893 -13.22857 -12.77490 -12.40821 -12.19870 -12.10421 -12.03798 -11.67349 -11.45095 -11.28027 -10.91426 -10.72342 -10.61587 -10.39588 -10.18411 -9.87787 -9.84416 -9.66145 -9.46964 -9.40686 -9.06960 -8.82428 -8.54514 -6.90014 -5.80871 -3.12124 -0.40135 0.33911 1.22873 2.19218 2.87860 2.95968 3.37658 3.42868 3.44792 3.57916 3.69248 3.98516 4.09483 4.31602 4.35477 4.42387 4.43082 4.52472 4.77586 4.94908 5.06407 5.09224 5.15766 5.26733 5.31841 5.37700 5.45989 5.48496 5.56253 5.66153 5.74352 5.74728 5.91365 5.99840 6.13030 6.19866 6.29345 6.36046 6.39023 6.50966 6.57911 6.70183 7.18718 7.29951 7.35729 7.53094 7.71568 7.94871 8.02406 9.01690 9.67989 10.56909 11.36795 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.002385 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.474728 B =11739.348611 C =12358.940588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.093 0.907 4 N -0.704 5.704 5 C 0.559 3.441 6 O -0.527 6.527 7 C -0.059 4.059 8 C -0.118 4.118 9 C 0.120 3.880 10 F -0.131 7.131 11 C -0.131 4.131 12 C -0.005 4.005 13 C -0.167 4.167 14 C 0.089 3.911 15 N -0.490 5.490 16 C 0.156 3.844 17 C -0.094 4.094 18 C -0.149 4.149 19 C 0.178 3.822 20 N -0.612 5.612 21 C -0.225 4.225 22 H 0.080 0.920 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.124 3.876 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.204 0.796 39 H 0.089 0.911 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.254 0.746 43 H 0.040 0.960 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -5.418 -25.253 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.111 0.889 4 N -0.354 5.354 5 C 0.345 3.655 6 O -0.405 6.405 7 C -0.064 4.064 8 C -0.138 4.138 9 C 0.099 3.901 10 F -0.109 7.109 11 C -0.150 4.150 12 C -0.010 4.010 13 C -0.187 4.187 14 C -0.055 4.055 15 N -0.198 5.198 16 C -0.013 4.013 17 C -0.097 4.097 18 C -0.169 4.169 19 C 0.052 3.948 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C -0.002 4.002 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.235 0.765 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.220 0.780 39 H 0.108 0.892 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.396 -3.712 -25.067 25.379 hybrid contribution 0.983 -1.803 0.832 2.216 sum -0.412 -5.515 -24.235 24.858 Atomic orbital electron populations 1.22124 0.95019 1.01850 1.02753 1.21258 0.94067 0.97671 0.82518 0.88889 1.46118 1.65581 1.14132 1.09563 1.17909 0.78202 0.86533 0.82850 1.90588 1.50712 1.15187 1.84052 1.19861 0.99810 0.92725 0.94039 1.21426 0.99707 0.94166 0.98476 1.17213 1.00418 0.77804 0.94635 1.91566 1.92562 1.29806 1.96978 1.21053 1.02294 0.93585 0.98060 1.17826 0.96765 0.92790 0.93636 1.21834 1.03426 0.95609 0.97830 1.22407 0.94213 0.92144 0.96708 1.67743 1.11541 1.40834 0.99686 1.24691 0.89829 0.90402 0.96422 1.18901 1.01844 0.96092 0.92835 1.23910 0.97672 1.00867 0.94474 1.22187 0.89501 0.94015 0.89056 1.45955 1.16056 1.72196 0.99574 1.19018 1.01675 1.31151 0.83391 0.90263 1.24805 0.97142 1.00713 0.97697 1.69819 1.15793 1.45825 1.25166 0.86133 0.79265 0.77675 0.82910 1.21600 1.21670 1.20582 1.22553 0.92911 0.97736 0.87024 0.92698 0.92563 0.90738 0.76524 0.83434 0.83424 0.84110 0.82750 0.78000 0.89229 0.95174 0.90894 0.93579 0.94186 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.46 37.16 0.35 -1.66 16 2 C 0.15 2.07 2.29 -67.93 -0.16 1.92 16 3 H 0.09 1.49 7.48 -51.93 -0.39 1.10 16 4 N -0.70 -8.08 4.89 -54.83 -0.27 -8.35 16 5 C 0.56 6.92 7.70 -12.45 -0.10 6.82 16 6 O -0.53 -7.88 13.13 5.29 0.07 -7.81 16 7 C -0.06 -0.63 5.90 -104.67 -0.62 -1.25 16 8 C -0.12 -1.02 9.48 -39.05 -0.37 -1.39 16 9 C 0.12 1.02 7.22 -39.81 -0.29 0.73 16 10 F -0.13 -1.16 17.24 2.25 0.04 -1.12 16 11 C -0.13 -1.02 9.75 -39.42 -0.38 -1.41 16 12 C 0.00 -0.04 5.74 -106.85 -0.61 -0.66 16 13 C -0.17 -1.31 9.88 -39.37 -0.39 -1.70 16 14 C 0.09 0.80 11.07 -17.97 -0.20 0.61 16 15 N -0.49 -5.93 10.30 -13.22 -0.14 -6.07 16 16 C 0.16 1.94 10.48 -17.07 -0.18 1.76 16 17 C -0.09 -1.05 5.76 -106.59 -0.61 -1.67 16 18 C -0.15 -2.48 3.35 -89.70 -0.30 -2.78 16 19 C 0.18 3.97 6.84 -2.84 -0.02 3.95 16 20 N -0.61 -15.29 3.70 -177.69 -0.66 -15.95 16 21 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 22 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -26.90 11.47 55.49 0.64 -26.26 16 25 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C 0.12 2.39 8.38 -2.97 -0.02 2.37 16 30 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.98 7.98 -51.93 -0.41 0.57 16 33 H 0.40 3.64 6.67 -40.82 -0.27 3.37 16 34 H 0.15 0.96 6.42 -52.49 -0.34 0.63 16 35 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.20 2.73 4.97 -52.49 -0.26 2.47 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 41 H 0.07 1.79 7.30 -51.93 -0.38 1.41 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -32.65 370.97 -9.30 -41.96 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.40 Total: 2.11 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -4.16 Total: -1.06 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.43 Total: -56.62 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.07 Total: -7.81 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.65 -9.30 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969684020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.801 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds