Wall clock time and date at job start Wed Apr 1 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47315 * 2 1 4 4 N 1.46506 * 109.47139 * 239.99659 * 2 1 3 5 5 C 1.34780 * 119.99376 * 84.99959 * 4 2 1 6 6 O 1.21582 * 120.00230 * 0.02562 * 5 4 2 7 7 C 1.47582 * 119.99866 * 179.97438 * 5 4 2 8 8 C 1.38654 * 120.41377 * 5.93818 * 7 5 4 9 9 C 1.39257 * 120.71791 * 179.71691 * 8 7 5 10 10 F 1.35098 * 119.43412 * 180.28589 * 9 8 7 11 11 C 1.36556 * 121.12925 * 0.55905 * 9 8 7 12 12 C 1.40283 * 119.91817 * 359.72583 * 11 9 8 13 13 C 1.40711 * 122.07361 * 179.97438 * 12 11 9 14 14 C 1.36237 * 118.66891 * 180.02562 * 13 12 11 15 15 N 1.32531 * 121.83755 * 0.02562 * 14 13 12 16 16 C 1.31327 * 122.71635 * 359.96071 * 15 14 13 17 17 C 1.40104 * 119.93184 * 0.03953 * 16 15 14 18 18 C 1.53001 * 109.47329 * 120.00206 * 2 1 3 19 19 C 1.53941 * 113.74172 * 281.82045 * 18 2 1 20 20 N 1.47815 * 86.03913 * 222.08142 * 19 18 2 21 21 C 1.36932 * 134.45650 * 204.64038 * 20 19 18 22 22 H 1.08006 * 119.99567 * 174.72886 * 21 20 19 23 23 C 1.38811 * 120.00410 * 354.73185 * 21 20 19 24 24 N 1.31618 * 119.99621 * 4.99711 * 23 21 20 25 25 Si 1.86797 * 120.00045 * 185.00531 * 23 21 20 26 26 H 1.48501 * 109.47464 * 94.99673 * 25 23 21 27 27 H 1.48496 * 109.47158 * 214.99363 * 25 23 21 28 28 H 1.48498 * 109.47137 * 334.99517 * 25 23 21 29 29 C 1.47581 * 91.04818 * 24.54755 * 20 19 18 30 30 H 1.09008 * 109.47319 * 175.01894 * 1 2 3 31 31 H 1.09002 * 109.47557 * 55.01237 * 1 2 3 32 32 H 1.08999 * 109.47049 * 295.01064 * 1 2 3 33 33 H 0.96993 * 120.00233 * 265.00413 * 4 2 1 34 34 H 1.08000 * 119.64170 * 359.97438 * 8 7 5 35 35 H 1.07998 * 120.03722 * 179.74226 * 11 9 8 36 36 H 1.07998 * 120.66731 * 0.04237 * 13 12 11 37 37 H 1.08005 * 119.08715 * 180.02562 * 14 13 12 38 38 H 1.08005 * 120.03180 * 180.02562 * 16 15 14 39 39 H 1.09006 * 112.94409 * 53.40866 * 18 2 1 40 40 H 1.08999 * 113.77044 * 336.34321 * 19 18 2 41 41 H 1.08999 * 113.77352 * 107.74084 * 19 18 2 42 42 H 0.97007 * 119.99770 * 180.02562 * 24 23 21 43 43 H 1.08998 * 113.77164 * 221.15447 * 29 20 19 44 44 H 1.09004 * 113.87104 * 89.76758 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4116 7 6 2.6395 -0.7138 -3.5620 8 6 2.8555 -2.0833 -3.5429 9 6 3.3145 -2.7469 -4.6779 10 9 3.5107 -4.0828 -4.6321 11 6 3.5750 -2.0696 -5.8347 12 6 3.3749 -0.6824 -5.8936 13 6 3.6291 0.0603 -7.0614 14 6 3.4111 1.4050 -7.0411 15 7 2.9694 2.0254 -5.9565 16 6 2.7115 1.3950 -4.8336 17 6 2.9029 0.0096 -4.7498 18 6 2.0400 -0.7213 1.2492 19 6 1.9745 0.1329 2.5282 20 7 3.3099 -0.4180 2.8416 21 6 4.0194 -0.6145 3.9962 22 1 4.9704 -1.1256 3.9651 23 6 3.5166 -0.1569 5.2064 24 7 2.3150 0.3775 5.2597 25 14 4.5453 -0.2994 6.7590 26 1 5.2766 0.9728 6.9869 27 1 3.6578 -0.5744 7.9173 28 1 5.5195 -1.4099 6.6072 29 6 3.5701 -0.6731 1.4115 30 1 -0.3634 -1.0238 -0.0892 31 1 -0.3634 0.5893 -0.8419 32 1 -0.3633 0.4345 0.9313 33 1 2.2489 -1.6318 -1.1526 34 1 2.6618 -2.6420 -2.6392 35 1 3.9344 -2.6014 -6.7033 36 1 3.9895 -0.4258 -7.9558 37 1 3.6036 1.9816 -7.9339 38 1 2.3525 1.9440 -3.9756 39 1 1.6175 -1.7193 1.3659 40 1 1.9753 1.2065 2.3401 41 1 1.1954 -0.1776 3.2245 42 1 1.9637 0.6976 6.1054 43 1 4.0627 -1.6260 1.2177 44 1 4.0408 0.1622 0.8929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969684020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:47 Heat of formation + Delta-G solvation = 15.679856 kcal Electronic energy + Delta-G solvation = -28943.071197 eV Core-core repulsion = 24776.066999 eV Total energy + Delta-G solvation = -4167.004198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.06835 -42.20344 -40.86604 -39.63647 -38.08137 -36.33772 -34.33625 -34.04562 -32.22186 -31.85680 -30.49997 -29.31224 -26.71333 -26.07035 -25.57998 -24.65179 -24.48685 -22.72946 -21.79164 -20.85214 -19.47714 -19.01332 -18.76106 -18.38322 -17.43619 -17.40962 -16.86549 -16.85365 -16.64233 -16.30590 -16.03182 -15.81176 -15.69184 -15.26503 -15.06208 -14.75575 -14.56209 -14.24794 -14.05719 -14.03410 -13.45153 -13.41877 -13.29087 -13.08169 -12.95670 -12.84287 -12.78787 -12.67722 -12.34740 -11.97318 -11.82597 -11.57095 -11.32760 -11.22404 -10.91576 -10.87561 -10.48106 -10.16661 -10.12389 -9.22551 -8.91059 -7.92234 -5.24331 -1.11661 -0.35667 0.48595 1.44888 1.45202 1.47025 1.55528 1.91731 2.10114 2.46934 2.89433 2.94752 3.27940 3.28766 3.38968 3.42994 3.59332 3.65398 3.71345 3.75816 3.88627 3.97258 4.20375 4.27270 4.32574 4.43766 4.48311 4.57515 4.58693 4.75579 4.77256 4.77807 4.81819 4.88128 4.96244 4.98862 5.06673 5.11975 5.26258 5.33044 5.46238 5.49564 5.54984 5.65465 5.68873 5.94048 6.43085 6.91953 6.96135 7.11156 7.60547 8.56555 9.25289 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.002385 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.474728 B =11739.348611 C =12358.940588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.068 0.932 4 N -0.695 5.695 5 C 0.560 3.440 6 O -0.559 6.559 7 C -0.081 4.081 8 C -0.098 4.098 9 C 0.108 3.892 10 F -0.131 7.131 11 C -0.108 4.108 12 C -0.021 4.021 13 C -0.143 4.143 14 C 0.067 3.933 15 N -0.512 5.512 16 C 0.126 3.874 17 C -0.103 4.103 18 C -0.109 4.109 19 C 0.173 3.827 20 N -0.644 5.644 21 C -0.236 4.236 22 H 0.083 0.917 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.975 3.025 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.125 3.875 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.414 0.586 34 H 0.169 0.831 35 H 0.182 0.818 36 H 0.183 0.817 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.109 0.891 40 H 0.013 0.987 41 H 0.044 0.956 42 H 0.249 0.751 43 H 0.062 0.938 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 -8.136 -27.875 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.057 3.943 3 H 0.086 0.914 4 N -0.346 5.346 5 C 0.348 3.652 6 O -0.440 6.440 7 C -0.086 4.086 8 C -0.118 4.118 9 C 0.088 3.912 10 F -0.109 7.109 11 C -0.126 4.126 12 C -0.027 4.027 13 C -0.162 4.162 14 C -0.077 4.077 15 N -0.221 5.221 16 C -0.043 4.043 17 C -0.106 4.106 18 C -0.129 4.129 19 C 0.047 3.953 20 N -0.371 5.371 21 C -0.364 4.364 22 H 0.101 0.899 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.804 3.196 26 H -0.218 1.218 27 H -0.220 1.220 28 H -0.190 1.190 29 C 0.000 4.000 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.252 0.748 34 H 0.187 0.813 35 H 0.199 0.801 36 H 0.200 0.800 37 H 0.200 0.800 38 H 0.198 0.802 39 H 0.127 0.873 40 H 0.031 0.969 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.228 -6.467 -27.723 28.468 hybrid contribution 0.682 -0.983 1.486 1.908 sum 0.454 -7.450 -26.237 27.278 Atomic orbital electron populations 1.22058 0.93733 1.03094 1.02243 1.20856 0.94912 0.96165 0.82386 0.91375 1.45857 1.65564 1.14661 1.08518 1.18188 0.77492 0.86157 0.83380 1.90597 1.52010 1.16757 1.84612 1.19569 1.02433 0.93436 0.93169 1.21628 0.97427 0.93252 0.99467 1.17240 1.01230 0.77883 0.94891 1.91576 1.92643 1.29695 1.96983 1.21379 0.99739 0.92728 0.98797 1.18081 0.97331 0.93682 0.93573 1.22280 1.00579 0.94963 0.98419 1.22907 0.94698 0.93392 0.96660 1.67645 1.11894 1.42140 1.00445 1.24351 0.92265 0.91333 0.96397 1.18983 1.02031 0.95644 0.93922 1.23482 0.95914 1.00534 0.92971 1.22094 0.87999 0.93849 0.91397 1.46393 1.17158 1.72388 1.01147 1.19421 1.01814 1.30402 0.84769 0.89888 1.25634 0.98310 1.01275 1.00803 1.70001 1.17309 1.47307 1.25401 0.85103 0.77805 0.77734 0.78988 1.21824 1.21966 1.19009 1.22707 0.94868 0.98522 0.83864 0.90584 0.92672 0.91637 0.74813 0.81348 0.80107 0.79978 0.80029 0.80238 0.87338 0.96932 0.93713 0.94217 0.91961 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.46 71.98 0.68 -3.12 16 2 C 0.16 4.47 2.29 44.99 0.10 4.57 16 3 H 0.07 2.27 7.48 -2.39 -0.02 2.26 16 4 N -0.70 -15.15 4.89 -445.65 -2.18 -17.34 16 5 C 0.56 13.86 7.70 86.71 0.67 14.53 16 6 O -0.56 -17.65 13.13 -3.97 -0.05 -17.71 16 7 C -0.08 -1.65 5.90 -19.90 -0.12 -1.76 16 8 C -0.10 -1.45 9.48 22.61 0.21 -1.23 16 9 C 0.11 1.47 7.22 22.12 0.16 1.63 16 10 F -0.13 -1.84 17.24 44.97 0.78 -1.07 16 11 C -0.11 -1.25 9.75 22.37 0.22 -1.03 16 12 C -0.02 -0.34 5.74 -21.31 -0.12 -0.46 16 13 C -0.14 -1.76 9.88 22.41 0.22 -1.54 16 14 C 0.07 1.10 11.07 84.12 0.93 2.03 16 15 N -0.51 -12.60 10.30 -195.74 -2.02 -14.62 16 16 C 0.13 3.28 10.48 85.22 0.89 4.17 16 17 C -0.10 -2.26 5.76 -21.14 -0.12 -2.38 16 18 C -0.11 -3.57 3.35 -10.14 -0.03 -3.60 16 19 C 0.17 7.93 6.84 86.44 0.59 8.52 16 20 N -0.64 -32.56 3.70 -716.08 -2.65 -35.21 16 21 C -0.24 -13.19 10.70 84.03 0.90 -12.29 16 22 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 23 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 24 N -0.95 -57.41 11.47 21.65 0.25 -57.16 16 25 Si 0.98 45.76 29.56 68.60 2.03 47.79 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 C 0.13 4.73 8.38 86.49 0.72 5.45 16 30 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.75 7.98 -2.39 -0.02 1.73 16 33 H 0.41 6.49 6.67 -92.71 -0.62 5.88 16 34 H 0.17 1.63 6.42 -2.91 -0.02 1.61 16 35 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 36 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.18 5.39 4.97 -2.93 -0.01 5.38 16 39 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.01 0.62 8.03 -2.39 -0.02 0.61 16 41 H 0.04 2.29 7.30 -2.39 -0.02 2.27 16 42 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.03 1.24 8.10 -2.39 -0.02 1.22 16 Total: -1.00 -74.45 370.97 2.96 -71.49 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.43 Total: 13.69 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.37 Total: 10.12 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.60 Total: -124.32 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.71 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.78 Total: -1.07 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.45 2.96 -71.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969684020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.174 kcal (2) G-P(sol) polarization free energy of solvation -74.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds