Wall clock time and date at job start Wed Apr 1 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47025 * 2 1 4 4 N 1.46496 * 109.47672 * 239.99605 * 2 1 3 5 5 C 1.34774 * 120.00095 * 84.99611 * 4 2 1 6 6 O 1.21609 * 120.00173 * 0.02562 * 5 4 2 7 7 C 1.47396 * 119.99986 * 180.02562 * 5 4 2 8 8 C 1.38958 * 120.65559 * 5.89891 * 7 5 4 9 9 C 1.38733 * 120.73218 * 179.97438 * 8 7 5 10 10 C 1.37506 * 121.67930 * 0.02771 * 9 8 7 11 11 F 1.35105 * 119.85034 * 179.97438 * 10 9 8 12 12 C 1.40585 * 120.29696 * 359.94962 * 10 9 8 13 13 C 1.40584 * 122.25920 * 179.97438 * 12 10 9 14 14 C 1.36307 * 118.65225 * 180.02562 * 13 12 10 15 15 N 1.32481 * 121.88390 * 0.02562 * 14 13 12 16 16 C 1.31373 * 122.68294 * 359.97438 * 15 14 13 17 17 C 1.40014 * 119.84712 * 359.76219 * 16 15 14 18 18 C 1.52999 * 109.47332 * 119.99185 * 2 1 3 19 19 C 1.53498 * 114.20862 * 300.00576 * 18 2 1 20 20 N 1.47061 * 87.98784 * 220.34012 * 19 18 2 21 21 C 1.36931 * 136.05910 * 207.08353 * 20 19 18 22 22 H 1.07996 * 120.00360 * 353.11002 * 21 20 19 23 23 C 1.38816 * 120.00029 * 173.10679 * 21 20 19 24 24 N 1.31621 * 119.99908 * 177.92825 * 23 21 20 25 25 Si 1.86801 * 119.99978 * 357.93185 * 23 21 20 26 26 H 1.48504 * 109.47077 * 176.37794 * 25 23 21 27 27 H 1.48493 * 109.47071 * 296.38066 * 25 23 21 28 28 H 1.48501 * 109.46995 * 56.38444 * 25 23 21 29 29 C 1.47067 * 87.88342 * 27.34193 * 20 19 18 30 30 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47393 * 300.00150 * 1 2 3 32 32 H 1.09003 * 109.46900 * 60.00812 * 1 2 3 33 33 H 0.97001 * 119.99668 * 265.00289 * 4 2 1 34 34 H 1.08001 * 119.63342 * 0.02562 * 8 7 5 35 35 H 1.07995 * 119.16174 * 180.02562 * 9 8 7 36 36 H 1.08003 * 120.67077 * 0.02562 * 13 12 10 37 37 H 1.08006 * 119.05925 * 179.97438 * 14 13 12 38 38 H 1.07997 * 120.07920 * 180.02562 * 16 15 14 39 39 H 1.09005 * 113.40995 * 73.19894 * 18 2 1 40 40 H 1.09005 * 113.47043 * 105.55999 * 19 18 2 41 41 H 1.09005 * 113.51909 * 335.13331 * 19 18 2 42 42 H 0.96999 * 120.00420 * 354.98919 * 24 23 21 43 43 H 1.08999 * 113.47171 * 87.43605 * 29 20 19 44 44 H 1.09003 * 113.46378 * 217.88156 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1616 -2.4117 7 6 2.6380 -0.7135 -3.5606 8 6 2.8561 -2.0858 -3.5468 9 6 3.3177 -2.7417 -4.6788 10 6 3.5762 -2.0675 -5.8490 11 9 4.0253 -2.7432 -6.9293 12 6 3.3749 -0.6783 -5.9265 13 6 3.6263 0.0520 -7.1012 14 6 3.4061 1.3971 -7.0943 15 7 2.9650 2.0285 -6.0164 16 6 2.7096 1.4092 -4.8863 17 6 2.8985 0.0250 -4.7921 18 6 2.0400 -0.7211 1.2493 19 6 1.5898 -0.0843 2.5715 20 7 2.9388 -0.3442 3.0960 21 6 3.4924 -0.5598 4.3298 22 1 2.8893 -0.4499 5.2189 23 6 4.8287 -0.9199 4.4376 24 7 5.3713 -1.0873 5.6250 25 14 5.8568 -1.1665 2.8976 26 1 7.2613 -1.4584 3.2816 27 1 5.3108 -2.3043 2.1150 28 1 5.8156 0.0672 2.0721 29 6 3.4328 -0.2640 1.7131 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.2491 -1.6318 -1.1524 34 1 2.6634 -2.6481 -2.6451 35 1 3.4780 -3.8089 -4.6400 36 1 3.9866 -0.4428 -7.9911 37 1 3.5974 1.9647 -7.9931 38 1 2.3509 1.9657 -4.0331 39 1 1.9118 -1.8027 1.2077 40 1 0.8094 -0.6491 3.0817 41 1 1.3543 0.9765 2.4854 42 1 4.8593 -0.8891 6.4247 43 1 3.6836 0.7495 1.3998 44 1 4.2227 -0.9818 1.4921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970315227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:00 Heat of formation + Delta-G solvation = 45.299655 kcal Electronic energy + Delta-G solvation = -29087.854615 eV Core-core repulsion = 24922.134827 eV Total energy + Delta-G solvation = -4165.719788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.53823 -41.24494 -39.95030 -38.68036 -37.38262 -35.27913 -33.15572 -32.49127 -31.61688 -31.23290 -29.50788 -27.81414 -25.65791 -25.13944 -24.23331 -24.07428 -23.23761 -21.30270 -20.85428 -19.58650 -18.70313 -18.28351 -17.95734 -17.56733 -17.05598 -16.33070 -16.25552 -15.77582 -15.46610 -15.33552 -15.17674 -14.94356 -14.46014 -14.23214 -14.04932 -13.88235 -13.58786 -13.36339 -13.20001 -13.03912 -12.81258 -12.42186 -12.16557 -12.02815 -11.95274 -11.87353 -11.51173 -11.05939 -10.70601 -10.58834 -10.48952 -10.33603 -10.05318 -9.77708 -9.69545 -9.36892 -9.12559 -9.02514 -8.96293 -8.45825 -7.19708 -6.35225 -3.28078 -0.46598 0.32338 1.11638 2.14150 2.82312 2.93889 3.34652 3.40275 3.44603 3.60099 3.62073 3.93164 4.01422 4.21592 4.23767 4.34228 4.40470 4.55183 4.61809 4.79439 4.82466 4.94414 5.02928 5.18542 5.20613 5.33448 5.35123 5.41961 5.46645 5.49280 5.57216 5.61024 5.67355 5.78705 5.92185 6.03680 6.11244 6.14623 6.18868 6.21421 6.28964 6.34198 6.46035 6.82843 7.06955 7.27737 7.62844 7.96617 8.19687 8.93368 9.45735 10.31094 11.17021 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.002739 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.234060 B =10221.824217 C =10929.144472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.095 0.905 4 N -0.710 5.710 5 C 0.563 3.437 6 O -0.531 6.531 7 C -0.107 4.107 8 C -0.054 4.054 9 C -0.141 4.141 10 C 0.128 3.872 11 F -0.126 7.126 12 C -0.057 4.057 13 C -0.156 4.156 14 C 0.084 3.916 15 N -0.480 5.480 16 C 0.150 3.850 17 C -0.058 4.058 18 C -0.142 4.142 19 C 0.136 3.864 20 N -0.629 5.629 21 C -0.303 4.303 22 H 0.082 0.918 23 C -0.024 4.024 24 N -0.935 5.935 25 Si 1.075 2.925 26 H -0.296 1.296 27 H -0.293 1.293 28 H -0.290 1.290 29 C 0.104 3.896 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.202 0.798 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.261 0.739 43 H 0.044 0.956 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -2.813 -26.357 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.113 0.887 4 N -0.360 5.360 5 C 0.350 3.650 6 O -0.410 6.410 7 C -0.112 4.112 8 C -0.074 4.074 9 C -0.161 4.161 10 C 0.108 3.892 11 F -0.104 7.104 12 C -0.063 4.063 13 C -0.176 4.176 14 C -0.060 4.060 15 N -0.188 5.188 16 C -0.019 4.019 17 C -0.061 4.061 18 C -0.162 4.162 19 C 0.009 3.991 20 N -0.356 5.356 21 C -0.429 4.429 22 H 0.099 0.901 23 C -0.223 4.223 24 N -0.577 5.577 25 Si 0.909 3.091 26 H -0.223 1.223 27 H -0.222 1.222 28 H -0.218 1.218 29 C -0.021 4.021 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.236 0.764 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.175 0.825 38 H 0.218 0.782 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.397 -1.582 -26.849 27.646 hybrid contribution -1.079 -1.151 0.340 1.614 sum -7.476 -2.733 -26.509 27.678 Atomic orbital electron populations 1.22126 0.94828 1.02158 1.02601 1.21119 0.94144 0.97620 0.82414 0.88730 1.46051 1.66245 1.14172 1.09509 1.17839 0.77901 0.86490 0.82773 1.90626 1.50707 1.15289 1.84342 1.20993 1.03231 0.93604 0.93407 1.21257 0.94931 0.92986 0.98180 1.21001 1.01852 1.01748 0.91492 1.17656 0.98424 0.88813 0.84271 1.91532 1.86105 1.79598 1.53192 1.18054 1.00910 0.92193 0.95157 1.21829 1.02185 0.95901 0.97670 1.22373 0.94868 0.91817 0.96944 1.67722 1.10672 1.40781 0.99602 1.24417 0.90959 0.90282 0.96236 1.19599 0.99399 0.95458 0.91614 1.23585 0.99130 1.00380 0.93071 1.22242 0.89950 0.97249 0.89663 1.46012 1.03555 1.83970 1.02108 1.20172 0.96087 1.45086 0.81595 0.90054 1.25737 0.94344 0.98634 1.03588 1.70911 1.39282 1.50350 0.97161 0.83637 0.75532 0.76066 0.73892 1.22350 1.22188 1.21751 1.22854 0.94381 0.98401 0.86466 0.92463 0.91030 0.92326 0.76439 0.83683 0.83389 0.83908 0.82495 0.78202 0.88291 0.93332 0.94153 0.92891 0.93843 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.29 37.15 0.35 -1.36 16 2 C 0.15 1.88 2.47 -67.94 -0.17 1.71 16 3 H 0.09 1.35 7.32 -51.93 -0.38 0.97 16 4 N -0.71 -7.48 5.03 -54.90 -0.28 -7.76 16 5 C 0.56 6.58 7.71 -12.53 -0.10 6.48 16 6 O -0.53 -7.57 13.31 5.27 0.07 -7.50 16 7 C -0.11 -1.08 6.05 -102.82 -0.62 -1.70 16 8 C -0.05 -0.40 9.51 -39.13 -0.37 -0.77 16 9 C -0.14 -1.00 9.90 -39.67 -0.39 -1.39 16 10 C 0.13 1.12 7.28 -38.96 -0.28 0.84 16 11 F -0.13 -1.09 16.72 2.25 0.04 -1.06 16 12 C -0.06 -0.57 5.75 -106.80 -0.61 -1.18 16 13 C -0.16 -1.37 9.70 -39.39 -0.38 -1.76 16 14 C 0.08 0.79 11.07 -17.97 -0.20 0.59 16 15 N -0.48 -5.76 10.30 -13.23 -0.14 -5.90 16 16 C 0.15 1.83 10.54 -17.08 -0.18 1.65 16 17 C -0.06 -0.64 5.90 -104.82 -0.62 -1.26 16 18 C -0.14 -2.14 3.67 -89.97 -0.33 -2.47 16 19 C 0.14 2.46 7.33 -8.52 -0.06 2.40 16 20 N -0.63 -14.97 3.67 -184.62 -0.68 -15.65 16 21 C -0.30 -8.63 11.09 -15.06 -0.17 -8.80 16 22 H 0.08 2.44 8.05 -52.49 -0.42 2.02 16 23 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 24 N -0.93 -29.36 13.70 55.49 0.76 -28.60 16 25 Si 1.08 26.57 24.98 -169.99 -4.25 22.33 16 26 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.29 -6.70 6.72 56.52 0.38 -6.32 16 28 H -0.29 -6.77 6.47 56.52 0.37 -6.40 16 29 C 0.10 2.09 5.60 -8.38 -0.05 2.04 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.40 3.22 6.69 -40.82 -0.27 2.94 16 34 H 0.15 0.67 6.45 -52.49 -0.34 0.33 16 35 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 0.92 7.81 -52.48 -0.41 0.51 16 37 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.20 2.60 5.15 -52.49 -0.27 2.33 16 39 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 43 H 0.04 0.88 7.93 -51.93 -0.41 0.47 16 44 H 0.05 0.97 3.87 -51.93 -0.20 0.77 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -34.42 362.66 -8.55 -42.98 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.26 Total: 1.49 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -4.29 Total: -5.80 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.33 Total: -57.91 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.07 Total: -7.50 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -4.25 Total: 22.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.42 -8.55 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970315227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.276 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds