Wall clock time and date at job start Wed Apr 1 2020 02:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47025 * 2 1 4 4 N 1.46496 * 109.47672 * 239.99605 * 2 1 3 5 5 C 1.34774 * 120.00095 * 84.99611 * 4 2 1 6 6 O 1.21609 * 120.00173 * 0.02562 * 5 4 2 7 7 C 1.47396 * 119.99986 * 180.02562 * 5 4 2 8 8 C 1.38958 * 120.65559 * 5.89891 * 7 5 4 9 9 C 1.38733 * 120.73218 * 179.97438 * 8 7 5 10 10 C 1.37506 * 121.67930 * 0.02771 * 9 8 7 11 11 F 1.35105 * 119.85034 * 179.97438 * 10 9 8 12 12 C 1.40585 * 120.29696 * 359.94962 * 10 9 8 13 13 C 1.40584 * 122.25920 * 179.97438 * 12 10 9 14 14 C 1.36307 * 118.65225 * 180.02562 * 13 12 10 15 15 N 1.32481 * 121.88390 * 0.02562 * 14 13 12 16 16 C 1.31373 * 122.68294 * 359.97438 * 15 14 13 17 17 C 1.40014 * 119.84712 * 359.76219 * 16 15 14 18 18 C 1.52999 * 109.47332 * 119.99185 * 2 1 3 19 19 C 1.53498 * 114.20862 * 300.00576 * 18 2 1 20 20 N 1.47061 * 87.98784 * 220.34012 * 19 18 2 21 21 C 1.36931 * 136.05910 * 207.08353 * 20 19 18 22 22 H 1.07996 * 120.00360 * 353.11002 * 21 20 19 23 23 C 1.38816 * 120.00029 * 173.10679 * 21 20 19 24 24 N 1.31621 * 119.99908 * 177.92825 * 23 21 20 25 25 Si 1.86801 * 119.99978 * 357.93185 * 23 21 20 26 26 H 1.48504 * 109.47077 * 176.37794 * 25 23 21 27 27 H 1.48493 * 109.47071 * 296.38066 * 25 23 21 28 28 H 1.48501 * 109.46995 * 56.38444 * 25 23 21 29 29 C 1.47067 * 87.88342 * 27.34193 * 20 19 18 30 30 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47393 * 300.00150 * 1 2 3 32 32 H 1.09003 * 109.46900 * 60.00812 * 1 2 3 33 33 H 0.97001 * 119.99668 * 265.00289 * 4 2 1 34 34 H 1.08001 * 119.63342 * 0.02562 * 8 7 5 35 35 H 1.07995 * 119.16174 * 180.02562 * 9 8 7 36 36 H 1.08003 * 120.67077 * 0.02562 * 13 12 10 37 37 H 1.08006 * 119.05925 * 179.97438 * 14 13 12 38 38 H 1.07997 * 120.07920 * 180.02562 * 16 15 14 39 39 H 1.09005 * 113.40995 * 73.19894 * 18 2 1 40 40 H 1.09005 * 113.47043 * 105.55999 * 19 18 2 41 41 H 1.09005 * 113.51909 * 335.13331 * 19 18 2 42 42 H 0.96999 * 120.00420 * 354.98919 * 24 23 21 43 43 H 1.08999 * 113.47171 * 87.43605 * 29 20 19 44 44 H 1.09003 * 113.46378 * 217.88156 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1616 -2.4117 7 6 2.6380 -0.7135 -3.5606 8 6 2.8561 -2.0858 -3.5468 9 6 3.3177 -2.7417 -4.6788 10 6 3.5762 -2.0675 -5.8490 11 9 4.0253 -2.7432 -6.9293 12 6 3.3749 -0.6783 -5.9265 13 6 3.6263 0.0520 -7.1012 14 6 3.4061 1.3971 -7.0943 15 7 2.9650 2.0285 -6.0164 16 6 2.7096 1.4092 -4.8863 17 6 2.8985 0.0250 -4.7921 18 6 2.0400 -0.7211 1.2493 19 6 1.5898 -0.0843 2.5715 20 7 2.9388 -0.3442 3.0960 21 6 3.4924 -0.5598 4.3298 22 1 2.8893 -0.4499 5.2189 23 6 4.8287 -0.9199 4.4376 24 7 5.3713 -1.0873 5.6250 25 14 5.8568 -1.1665 2.8976 26 1 7.2613 -1.4584 3.2816 27 1 5.3108 -2.3043 2.1150 28 1 5.8156 0.0672 2.0721 29 6 3.4328 -0.2640 1.7131 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 2.2491 -1.6318 -1.1524 34 1 2.6634 -2.6481 -2.6451 35 1 3.4780 -3.8089 -4.6400 36 1 3.9866 -0.4428 -7.9911 37 1 3.5974 1.9647 -7.9931 38 1 2.3509 1.9657 -4.0331 39 1 1.9118 -1.8027 1.2077 40 1 0.8094 -0.6491 3.0817 41 1 1.3543 0.9765 2.4854 42 1 4.8593 -0.8891 6.4247 43 1 3.6836 0.7495 1.3998 44 1 4.2227 -0.9818 1.4921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970315227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:59 Heat of formation + Delta-G solvation = 21.692645 kcal Electronic energy + Delta-G solvation = -29088.878291 eV Core-core repulsion = 24922.134827 eV Total energy + Delta-G solvation = -4166.743464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.17084 -41.99966 -40.98910 -39.96089 -38.08141 -36.39835 -34.55882 -33.84106 -32.32313 -32.27031 -30.35571 -29.42937 -27.09039 -26.02495 -25.33068 -24.83199 -24.30903 -22.62861 -21.76585 -20.96625 -19.59480 -19.39056 -19.05034 -18.69121 -17.92979 -17.44973 -16.96060 -16.89019 -16.60965 -16.11285 -16.04493 -15.83400 -15.71065 -15.37684 -15.11092 -15.01059 -14.81367 -14.38014 -14.27779 -13.95438 -13.55800 -13.52909 -13.35171 -13.19427 -13.09289 -12.86060 -12.63971 -12.50732 -12.38239 -12.12278 -11.69693 -11.26154 -11.19873 -11.08420 -10.96247 -10.77451 -10.56224 -10.37018 -10.13780 -9.19398 -9.13777 -8.64826 -5.48245 -1.15699 -0.33881 0.37890 1.36516 1.45384 1.48626 1.68650 1.96505 2.15178 2.54156 2.80185 2.86316 2.99985 3.18548 3.31189 3.34047 3.46889 3.50868 3.61123 3.67868 3.75921 3.88674 4.23036 4.24511 4.31627 4.39699 4.46223 4.54474 4.58664 4.59732 4.68836 4.69565 4.70120 4.80117 4.86028 4.87185 4.95925 4.96354 5.07280 5.19182 5.34399 5.42945 5.47880 5.53686 5.61387 5.95347 6.47924 6.69754 6.87472 7.15352 7.32937 8.27121 8.90330 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.002739 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.234060 B =10221.824217 C =10929.144472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.075 0.925 4 N -0.700 5.700 5 C 0.563 3.437 6 O -0.564 6.564 7 C -0.129 4.129 8 C -0.032 4.032 9 C -0.131 4.131 10 C 0.124 3.876 11 F -0.125 7.125 12 C -0.073 4.073 13 C -0.148 4.148 14 C 0.070 3.930 15 N -0.504 5.504 16 C 0.126 3.874 17 C -0.070 4.070 18 C -0.103 4.103 19 C 0.131 3.869 20 N -0.663 5.663 21 C -0.289 4.289 22 H 0.048 0.952 23 C -0.087 4.087 24 N -0.973 5.973 25 Si 1.113 2.887 26 H -0.309 1.309 27 H -0.258 1.258 28 H -0.273 1.273 29 C 0.093 3.907 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.415 0.585 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.185 0.815 39 H 0.122 0.878 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.246 0.754 43 H 0.042 0.958 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 -5.234 -29.470 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.056 3.944 3 H 0.093 0.907 4 N -0.352 5.352 5 C 0.352 3.648 6 O -0.445 6.445 7 C -0.134 4.134 8 C -0.051 4.051 9 C -0.151 4.151 10 C 0.104 3.896 11 F -0.103 7.103 12 C -0.079 4.079 13 C -0.168 4.168 14 C -0.074 4.074 15 N -0.212 5.212 16 C -0.042 4.042 17 C -0.073 4.073 18 C -0.122 4.122 19 C 0.005 3.995 20 N -0.392 5.392 21 C -0.417 4.417 22 H 0.066 0.934 23 C -0.278 4.278 24 N -0.619 5.619 25 Si 0.940 3.060 26 H -0.237 1.237 27 H -0.184 1.184 28 H -0.199 1.199 29 C -0.032 4.032 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.254 0.746 34 H 0.197 0.803 35 H 0.199 0.801 36 H 0.185 0.815 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.034 -4.018 -29.998 31.073 hybrid contribution -0.992 -0.370 1.281 1.662 sum -8.025 -4.388 -28.717 30.139 Atomic orbital electron populations 1.22065 0.93131 1.03413 1.02470 1.20835 0.95265 0.96317 0.81966 0.90730 1.45852 1.66049 1.14791 1.08515 1.18072 0.77291 0.86114 0.83334 1.90628 1.52094 1.16887 1.84880 1.20852 1.05413 0.94723 0.92392 1.21658 0.92271 0.91756 0.99435 1.21386 1.00062 1.03259 0.90360 1.17776 0.98530 0.88344 0.84954 1.91538 1.86096 1.79399 1.53308 1.18273 1.01282 0.93150 0.95191 1.22144 1.00761 0.95697 0.98157 1.22810 0.94929 0.92619 0.97063 1.67654 1.11359 1.41881 1.00304 1.24189 0.92658 0.91185 0.96166 1.19651 0.99866 0.95074 0.92674 1.23272 0.94829 1.01503 0.92637 1.22482 0.87798 0.98252 0.90963 1.46165 1.06717 1.84357 1.01918 1.20049 0.95748 1.42854 0.83017 0.93396 1.27096 0.96165 0.99196 1.05390 1.71016 1.39739 1.53534 0.97601 0.83217 0.73444 0.77934 0.71411 1.23728 1.18357 1.19929 1.23084 0.97177 0.98506 0.84395 0.90482 0.90949 0.92764 0.74624 0.80278 0.80081 0.81472 0.79894 0.79901 0.85999 0.92420 0.93177 0.94530 0.94028 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.29 71.98 0.67 -2.14 16 2 C 0.16 3.54 2.47 44.99 0.11 3.65 16 3 H 0.07 2.01 7.32 -2.38 -0.02 1.99 16 4 N -0.70 -12.44 5.03 -445.85 -2.24 -14.68 16 5 C 0.56 12.20 7.71 86.66 0.67 12.87 16 6 O -0.56 -16.10 13.31 -4.06 -0.05 -16.16 16 7 C -0.13 -2.31 6.05 -18.70 -0.11 -2.43 16 8 C -0.03 -0.34 9.51 22.56 0.21 -0.12 16 9 C -0.13 -1.26 9.90 22.22 0.22 -1.04 16 10 C 0.12 1.77 7.28 22.67 0.17 1.94 16 11 F -0.13 -1.76 16.72 44.97 0.75 -1.01 16 12 C -0.07 -1.33 5.75 -21.27 -0.12 -1.45 16 13 C -0.15 -2.36 9.70 22.39 0.22 -2.14 16 14 C 0.07 1.26 11.07 84.14 0.93 2.19 16 15 N -0.50 -12.34 10.30 -195.77 -2.02 -14.36 16 16 C 0.13 3.19 10.54 85.19 0.90 4.09 16 17 C -0.07 -1.50 5.90 -19.99 -0.12 -1.62 16 18 C -0.10 -2.75 3.67 -10.37 -0.04 -2.78 16 19 C 0.13 4.45 7.33 83.17 0.61 5.06 16 20 N -0.66 -30.83 3.67 -738.00 -2.71 -33.54 16 21 C -0.29 -16.69 11.09 84.04 0.93 -15.76 16 22 H 0.05 3.00 8.05 -2.91 -0.02 2.98 16 23 C -0.09 -5.20 5.50 84.86 0.47 -4.74 16 24 N -0.97 -63.10 13.70 21.65 0.30 -62.81 16 25 Si 1.11 52.83 24.98 68.60 1.71 54.55 16 26 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 27 H -0.26 -10.61 6.72 99.48 0.67 -9.94 16 28 H -0.27 -12.02 6.47 99.48 0.64 -11.38 16 29 C 0.09 3.48 5.60 83.26 0.47 3.95 16 30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.33 7.48 -2.39 -0.02 1.31 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.42 4.64 6.69 -92.71 -0.62 4.02 16 34 H 0.18 0.57 6.45 -2.91 -0.02 0.55 16 35 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 36 H 0.17 1.72 7.81 -2.91 -0.02 1.69 16 37 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.18 5.13 5.15 -2.91 -0.02 5.11 16 39 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 40 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.05 1.64 8.10 -2.38 -0.02 1.62 16 42 H 0.25 16.01 8.73 -92.71 -0.81 15.20 16 43 H 0.04 1.60 7.93 -2.39 -0.02 1.58 16 44 H 0.05 1.76 3.87 -2.39 -0.01 1.75 16 Total: -1.00 -79.31 362.66 2.22 -77.09 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.30 Total: 11.38 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 6.18 Total: -0.47 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -6.67 Total: -125.38 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.05 Total: -16.16 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.75 Total: -1.01 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 1.71 Total: 54.55 kcal Total: -79.31 2.22 -77.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970315227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.787 kcal (2) G-P(sol) polarization free energy of solvation -79.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds