Wall clock time and date at job start Wed Apr 1 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47365 * 2 1 4 4 N 1.46497 * 109.47015 * 120.00440 * 2 1 3 5 5 C 1.34778 * 119.99735 * 274.99713 * 4 2 1 6 6 O 1.21596 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.47452 * 119.99944 * 179.97438 * 5 4 2 8 8 C 1.38718 * 120.31368 * 0.02562 * 7 5 4 9 9 C 1.39103 * 120.69196 * 180.02562 * 8 7 5 10 10 F 1.35101 * 119.49645 * 179.97438 * 9 8 7 11 11 C 1.36535 * 121.00149 * 359.97438 * 9 8 7 12 12 C 1.40409 * 120.07639 * 359.95952 * 11 9 8 13 13 C 1.40813 * 121.24401 * 180.02562 * 12 11 9 14 14 C 1.36627 * 118.15799 * 179.21741 * 13 12 11 15 15 C 1.39238 * 119.90563 * 0.76893 * 14 13 12 16 16 N 1.31225 * 121.69498 * 359.48027 * 15 14 13 17 17 C 1.33361 * 121.36155 * 359.97438 * 16 15 14 18 18 C 1.53007 * 109.47267 * 240.00142 * 2 1 3 19 19 C 1.53497 * 114.20425 * 64.99908 * 18 2 1 20 20 N 1.47062 * 87.98453 * 220.14915 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48501 * 109.46896 * 89.99850 * 25 23 21 27 27 H 1.48499 * 109.47039 * 210.00011 * 25 23 21 28 28 H 1.48501 * 109.47275 * 329.99811 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47196 * 299.99756 * 1 2 3 32 32 H 1.08999 * 109.46873 * 59.99730 * 1 2 3 33 33 H 0.96998 * 120.00390 * 95.00276 * 4 2 1 34 34 H 1.07993 * 119.65228 * 0.02562 * 8 7 5 35 35 H 1.08001 * 119.96034 * 179.97438 * 11 9 8 36 36 H 1.08005 * 120.91711 * 359.94532 * 13 12 11 37 37 H 1.08003 * 120.04830 * 180.22535 * 14 13 12 38 38 H 1.08001 * 119.15398 * 179.45996 * 15 14 13 39 39 H 1.08994 * 113.28303 * 198.06756 * 18 2 1 40 40 H 1.09000 * 113.46436 * 105.36543 * 19 18 2 41 41 H 1.08997 * 113.51966 * 334.94328 * 19 18 2 42 42 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 43 43 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 44 44 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8584 1.1616 2.4117 7 6 2.6380 -0.7136 3.5612 8 6 2.9697 -2.0594 3.5062 9 6 3.4331 -2.7233 4.6374 10 9 3.7487 -4.0344 4.5567 11 6 3.5738 -2.0699 5.8279 12 6 3.2502 -0.7071 5.9252 13 6 3.3864 -0.0090 7.1405 14 6 3.0688 1.3197 7.1600 15 6 2.6096 1.9407 6.0014 16 7 2.4793 1.2844 4.8726 17 6 2.7825 -0.0113 4.7842 18 6 2.0401 -0.7212 -1.2493 19 6 1.6920 -0.0176 -2.5684 20 7 1.4191 -1.3434 -3.1433 21 6 1.4517 -1.9017 -4.3934 22 1 1.7373 -1.3024 -5.2452 23 6 1.1115 -3.2363 -4.5664 24 7 0.7629 -3.9666 -3.5284 25 14 1.1484 -3.9959 -6.2726 26 1 2.4960 -4.5630 -6.5328 27 1 0.1324 -5.0757 -6.3558 28 1 0.8463 -2.9528 -7.2855 29 6 1.0895 -1.8040 -1.7861 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1525 34 1 2.8671 -2.5974 2.5754 35 1 3.9347 -2.6019 6.6958 36 1 3.7435 -0.5073 8.0297 37 1 3.1655 1.8855 8.0748 38 1 2.3537 2.9895 6.0327 39 1 3.0811 -1.0346 -1.1710 40 1 2.5412 0.4883 -3.0276 41 1 0.8085 0.6173 -2.5027 42 1 0.5255 -4.8993 -3.6493 43 1 0.0470 -1.6404 -1.5134 44 1 1.4255 -2.8200 -1.5791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970523178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:03 Heat of formation + Delta-G solvation = 49.523611 kcal Electronic energy + Delta-G solvation = -28935.882607 eV Core-core repulsion = 24770.345984 eV Total energy + Delta-G solvation = -4165.536623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.28509 -41.28987 -39.66688 -38.29836 -36.99800 -34.71699 -33.83933 -32.31090 -31.22179 -30.45355 -29.62821 -27.31035 -25.35736 -24.79044 -24.44387 -23.84959 -23.44524 -21.47084 -20.39313 -19.05396 -18.76363 -17.94127 -17.65432 -16.81497 -16.47646 -16.07965 -16.03083 -15.66531 -15.28494 -15.00637 -14.86893 -14.77703 -14.33366 -14.21639 -13.78486 -13.67294 -13.47327 -13.31911 -12.83328 -12.69338 -12.38820 -11.99115 -11.95704 -11.72273 -11.65464 -11.38694 -10.96193 -10.90933 -10.86648 -10.58562 -10.41212 -10.12885 -9.92110 -9.69022 -9.38102 -9.19709 -9.17506 -8.82593 -8.78168 -8.60041 -6.84864 -5.77306 -3.08741 -0.31995 0.31586 1.35865 2.21105 3.13693 3.15605 3.39066 3.43911 3.45782 3.70128 3.79625 3.89193 4.11633 4.24077 4.43403 4.45510 4.48151 4.62796 4.81975 4.98892 5.13257 5.19452 5.26563 5.29526 5.39038 5.43761 5.48476 5.59651 5.61943 5.71943 5.76609 5.82096 6.04260 6.07509 6.15434 6.29013 6.33357 6.41529 6.56602 6.66969 6.72201 6.82592 7.21317 7.37356 7.54593 7.61757 7.72312 7.98049 8.37423 9.04118 9.70354 10.64867 11.40396 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.002431 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.043338 B =11514.781197 C =12825.981111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.085 0.915 4 N -0.716 5.716 5 C 0.551 3.449 6 O -0.497 6.497 7 C -0.069 4.069 8 C -0.099 4.099 9 C 0.102 3.898 10 F -0.131 7.131 11 C -0.116 4.116 12 C -0.088 4.088 13 C -0.061 4.061 14 C -0.167 4.167 15 C 0.130 3.870 16 N -0.430 5.430 17 C 0.151 3.849 18 C -0.157 4.157 19 C 0.128 3.872 20 N -0.611 5.611 21 C -0.215 4.215 22 H 0.081 0.919 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.155 3.845 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.253 0.747 43 H 0.038 0.962 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 6.645 25.206 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.055 3.945 3 H 0.103 0.897 4 N -0.369 5.369 5 C 0.336 3.664 6 O -0.371 6.371 7 C -0.073 4.073 8 C -0.120 4.120 9 C 0.083 3.917 10 F -0.109 7.109 11 C -0.136 4.136 12 C -0.090 4.090 13 C -0.087 4.087 14 C -0.187 4.187 15 C -0.043 4.043 16 N -0.136 5.136 17 C 0.027 3.973 18 C -0.177 4.177 19 C 0.001 3.999 20 N -0.336 5.336 21 C -0.343 4.343 22 H 0.098 0.902 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.743 3.257 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.029 3.971 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.180 0.820 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.220 7.545 24.092 25.780 hybrid contribution 0.398 -1.734 -0.121 1.783 sum 5.618 5.811 23.971 25.297 Atomic orbital electron populations 1.22289 0.95260 1.02727 1.01819 1.20902 0.94101 0.96823 0.82708 0.89730 1.46126 1.67010 1.14106 1.09623 1.17756 0.79224 0.86915 0.82516 1.90850 1.47832 1.14412 1.84047 1.19908 1.01025 0.92511 0.93868 1.21534 0.97623 0.94003 0.98882 1.17133 1.01212 0.78890 0.94452 1.91568 1.90391 1.32026 1.96925 1.21051 1.01176 0.93797 0.97533 1.18513 1.01603 0.93982 0.94891 1.21420 0.96372 0.94436 0.96450 1.22016 1.00528 0.95612 1.00496 1.23240 0.92889 1.00624 0.87507 1.68341 1.12570 1.06477 1.26203 1.18626 0.96589 0.90471 0.91602 1.23717 1.01015 1.00756 0.92260 1.22368 0.97317 0.90199 0.90012 1.45520 1.78720 1.05742 1.03650 1.18940 1.39222 0.93161 0.82962 0.90160 1.24783 1.01771 0.96422 0.97579 1.69814 1.51500 1.07355 1.28139 0.86113 0.77352 0.78875 0.83387 1.21536 1.21647 1.20684 1.22397 0.94644 0.96524 0.83525 0.91437 0.92994 0.91278 0.76677 0.83032 0.83571 0.83973 0.84161 0.82023 0.88987 0.94234 0.94582 0.93696 0.94442 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.22 37.16 0.31 -2.25 16 2 C 0.16 2.49 2.76 -67.93 -0.19 2.30 16 3 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 4 N -0.72 -10.03 5.03 -54.87 -0.28 -10.31 16 5 C 0.55 8.30 7.73 -12.51 -0.10 8.21 16 6 O -0.50 -9.04 14.84 5.28 0.08 -8.96 16 7 C -0.07 -0.88 5.90 -104.62 -0.62 -1.50 16 8 C -0.10 -1.04 9.49 -39.08 -0.37 -1.41 16 9 C 0.10 0.99 7.22 -39.88 -0.29 0.71 16 10 F -0.13 -1.33 17.24 2.25 0.04 -1.29 16 11 C -0.12 -0.96 9.71 -39.38 -0.38 -1.34 16 12 C -0.09 -0.83 5.74 -106.83 -0.61 -1.45 16 13 C -0.06 -0.41 9.89 -39.19 -0.39 -0.80 16 14 C -0.17 -1.07 10.03 -39.79 -0.40 -1.47 16 15 C 0.13 1.19 11.15 -17.44 -0.19 0.99 16 16 N -0.43 -5.73 8.43 -10.76 -0.09 -5.82 16 17 C 0.15 1.90 6.61 -84.57 -0.56 1.34 16 18 C -0.16 -2.84 4.14 -89.97 -0.37 -3.21 16 19 C 0.13 2.60 8.10 -8.51 -0.07 2.53 16 20 N -0.61 -15.59 3.78 -184.61 -0.70 -16.29 16 21 C -0.22 -6.06 10.75 -15.06 -0.16 -6.22 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.09 11.50 55.49 0.64 -26.46 16 25 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 C 0.15 3.47 6.54 -8.37 -0.05 3.41 16 30 H 0.07 1.09 6.33 -51.93 -0.33 0.76 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 33 H 0.40 4.86 6.62 -40.82 -0.27 4.59 16 34 H 0.15 1.35 6.36 -52.49 -0.33 1.02 16 35 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 37 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 38 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.71 6.75 -51.93 -0.35 0.36 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.04 0.85 5.45 -51.93 -0.28 0.57 16 44 H 0.07 1.69 7.12 -51.93 -0.37 1.32 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -34.92 366.96 -9.53 -44.45 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.19 Total: 2.54 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -4.54 Total: -0.50 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.43 Total: -58.88 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.92 -9.53 -44.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970523178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.973 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds