Wall clock time and date at job start Wed Apr 1 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47365 * 2 1 4 4 N 1.46497 * 109.47015 * 120.00440 * 2 1 3 5 5 C 1.34778 * 119.99735 * 274.99713 * 4 2 1 6 6 O 1.21596 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.47452 * 119.99944 * 179.97438 * 5 4 2 8 8 C 1.38718 * 120.31368 * 0.02562 * 7 5 4 9 9 C 1.39103 * 120.69196 * 180.02562 * 8 7 5 10 10 F 1.35101 * 119.49645 * 179.97438 * 9 8 7 11 11 C 1.36535 * 121.00149 * 359.97438 * 9 8 7 12 12 C 1.40409 * 120.07639 * 359.95952 * 11 9 8 13 13 C 1.40813 * 121.24401 * 180.02562 * 12 11 9 14 14 C 1.36627 * 118.15799 * 179.21741 * 13 12 11 15 15 C 1.39238 * 119.90563 * 0.76893 * 14 13 12 16 16 N 1.31225 * 121.69498 * 359.48027 * 15 14 13 17 17 C 1.33361 * 121.36155 * 359.97438 * 16 15 14 18 18 C 1.53007 * 109.47267 * 240.00142 * 2 1 3 19 19 C 1.53497 * 114.20425 * 64.99908 * 18 2 1 20 20 N 1.47062 * 87.98453 * 220.14915 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48501 * 109.46896 * 89.99850 * 25 23 21 27 27 H 1.48499 * 109.47039 * 210.00011 * 25 23 21 28 28 H 1.48501 * 109.47275 * 329.99811 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47196 * 299.99756 * 1 2 3 32 32 H 1.08999 * 109.46873 * 59.99730 * 1 2 3 33 33 H 0.96998 * 120.00390 * 95.00276 * 4 2 1 34 34 H 1.07993 * 119.65228 * 0.02562 * 8 7 5 35 35 H 1.08001 * 119.96034 * 179.97438 * 11 9 8 36 36 H 1.08005 * 120.91711 * 359.94532 * 13 12 11 37 37 H 1.08003 * 120.04830 * 180.22535 * 14 13 12 38 38 H 1.08001 * 119.15398 * 179.45996 * 15 14 13 39 39 H 1.08994 * 113.28303 * 198.06756 * 18 2 1 40 40 H 1.09000 * 113.46436 * 105.36543 * 19 18 2 41 41 H 1.08997 * 113.51966 * 334.94328 * 19 18 2 42 42 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 43 43 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 44 44 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8584 1.1616 2.4117 7 6 2.6380 -0.7136 3.5612 8 6 2.9697 -2.0594 3.5062 9 6 3.4331 -2.7233 4.6374 10 9 3.7487 -4.0344 4.5567 11 6 3.5738 -2.0699 5.8279 12 6 3.2502 -0.7071 5.9252 13 6 3.3864 -0.0090 7.1405 14 6 3.0688 1.3197 7.1600 15 6 2.6096 1.9407 6.0014 16 7 2.4793 1.2844 4.8726 17 6 2.7825 -0.0113 4.7842 18 6 2.0401 -0.7212 -1.2493 19 6 1.6920 -0.0176 -2.5684 20 7 1.4191 -1.3434 -3.1433 21 6 1.4517 -1.9017 -4.3934 22 1 1.7373 -1.3024 -5.2452 23 6 1.1115 -3.2363 -4.5664 24 7 0.7629 -3.9666 -3.5284 25 14 1.1484 -3.9959 -6.2726 26 1 2.4960 -4.5630 -6.5328 27 1 0.1324 -5.0757 -6.3558 28 1 0.8463 -2.9528 -7.2855 29 6 1.0895 -1.8040 -1.7861 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 1.1525 34 1 2.8671 -2.5974 2.5754 35 1 3.9347 -2.6019 6.6958 36 1 3.7435 -0.5073 8.0297 37 1 3.1655 1.8855 8.0748 38 1 2.3537 2.9895 6.0327 39 1 3.0811 -1.0346 -1.1710 40 1 2.5412 0.4883 -3.0276 41 1 0.8085 0.6173 -2.5027 42 1 0.5255 -4.8993 -3.6493 43 1 0.0470 -1.6404 -1.5134 44 1 1.4255 -2.8200 -1.5791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970523178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:02 Heat of formation + Delta-G solvation = 27.228769 kcal Electronic energy + Delta-G solvation = -28936.849384 eV Core-core repulsion = 24770.345984 eV Total energy + Delta-G solvation = -4166.503400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.02022 -42.05986 -40.94499 -39.75420 -37.76809 -36.12077 -34.58461 -34.19093 -32.31343 -31.24870 -30.69874 -29.13298 -26.62877 -26.26818 -25.72419 -24.64093 -24.44318 -22.97014 -21.46846 -20.31927 -19.69224 -18.92146 -18.71120 -18.43671 -17.47408 -17.15023 -16.86845 -16.81843 -16.49669 -16.09594 -16.04149 -15.85193 -15.62995 -15.44938 -15.07791 -14.78240 -14.34003 -14.15572 -14.06404 -13.96386 -13.58127 -13.34806 -13.27911 -13.09008 -12.79826 -12.67542 -12.64963 -12.46068 -12.22221 -12.09181 -11.82548 -11.59523 -11.52268 -11.16756 -10.92540 -10.83550 -10.19605 -10.07922 -9.85039 -9.36142 -8.87608 -7.90462 -5.22814 -1.03726 -0.37616 0.68511 1.45699 1.47384 1.47633 1.56020 2.04833 2.16113 2.47474 2.97157 3.03826 3.19909 3.31390 3.36845 3.46171 3.58940 3.67844 3.75457 3.91213 4.01502 4.04860 4.19666 4.25470 4.33129 4.42233 4.52620 4.54094 4.59309 4.70267 4.71273 4.77109 4.84626 4.97730 5.01081 5.03377 5.05060 5.18767 5.23860 5.34380 5.40897 5.48679 5.56744 5.67456 5.71781 5.95306 6.53248 6.92467 7.00926 7.24049 7.60431 8.62152 9.27095 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.002431 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.043338 B =11514.781197 C =12825.981111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 H 0.084 0.916 4 N -0.712 5.712 5 C 0.553 3.447 6 O -0.535 6.535 7 C -0.104 4.104 8 C -0.088 4.088 9 C 0.081 3.919 10 F -0.135 7.135 11 C -0.086 4.086 12 C -0.102 4.102 13 C -0.049 4.049 14 C -0.161 4.161 15 C 0.126 3.874 16 N -0.489 5.489 17 C 0.129 3.871 18 C -0.123 4.123 19 C 0.126 3.874 20 N -0.644 5.644 21 C -0.229 4.229 22 H 0.083 0.917 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.979 3.021 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.270 1.270 29 C 0.156 3.844 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.406 0.594 34 H 0.158 0.842 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.248 0.752 43 H 0.037 0.963 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.910 6.937 27.773 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.066 3.934 3 H 0.102 0.898 4 N -0.365 5.365 5 C 0.340 3.660 6 O -0.412 6.412 7 C -0.108 4.108 8 C -0.109 4.109 9 C 0.061 3.939 10 F -0.114 7.114 11 C -0.105 4.105 12 C -0.105 4.105 13 C -0.075 4.075 14 C -0.180 4.180 15 C -0.046 4.046 16 N -0.197 5.197 17 C 0.006 3.994 18 C -0.143 4.143 19 C 0.000 4.000 20 N -0.370 5.370 21 C -0.357 4.357 22 H 0.101 0.899 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.807 3.193 26 H -0.211 1.211 27 H -0.221 1.221 28 H -0.195 1.195 29 C 0.031 3.969 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.243 0.757 34 H 0.176 0.824 35 H 0.201 0.799 36 H 0.203 0.797 37 H 0.199 0.801 38 H 0.196 0.804 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.367 7.852 26.672 28.523 hybrid contribution 0.070 -1.723 -0.758 1.883 sum 6.437 6.129 25.914 27.396 Atomic orbital electron populations 1.22192 0.95136 1.02193 1.01768 1.20640 0.94018 0.96445 0.82330 0.89777 1.46011 1.66893 1.14442 1.09104 1.18110 0.78253 0.86541 0.83078 1.90811 1.49677 1.16007 1.84701 1.19701 1.04273 0.93397 0.93409 1.21592 0.96383 0.93235 0.99716 1.17173 1.02855 0.78921 0.94907 1.91559 1.90626 1.32197 1.96976 1.21441 0.97962 0.93199 0.97918 1.18769 1.01958 0.94556 0.95206 1.21946 0.94547 0.94499 0.96477 1.22396 0.98972 0.95874 1.00788 1.23769 0.91697 1.01490 0.87633 1.68281 1.15321 1.07451 1.28659 1.18851 0.97298 0.90792 0.92443 1.23355 1.00081 0.98268 0.92552 1.22539 0.98164 0.88802 0.90464 1.45893 1.79064 1.08285 1.03780 1.19320 1.38434 0.93620 0.84330 0.89917 1.25618 1.02181 0.96989 1.01244 1.69994 1.52792 1.07226 1.29982 0.85072 0.77072 0.77845 0.79299 1.21141 1.22051 1.19513 1.22350 0.95421 0.96140 0.82998 0.92145 0.92913 0.91379 0.75695 0.82445 0.79886 0.79738 0.80115 0.80378 0.88663 0.93208 0.93147 0.94265 0.94587 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 8.22 71.98 0.59 -4.33 16 2 C 0.17 5.39 2.76 44.99 0.12 5.52 16 3 H 0.08 2.75 7.58 -2.39 -0.02 2.73 16 4 N -0.71 -20.47 5.03 -445.77 -2.24 -22.71 16 5 C 0.55 17.32 7.73 86.67 0.67 17.99 16 6 O -0.54 -20.27 14.84 -4.02 -0.06 -20.33 16 7 C -0.10 -2.73 5.90 -19.86 -0.12 -2.85 16 8 C -0.09 -1.86 9.49 22.59 0.21 -1.65 16 9 C 0.08 1.47 7.22 22.08 0.16 1.62 16 10 F -0.14 -2.58 17.24 44.97 0.78 -1.81 16 11 C -0.09 -1.18 9.71 22.40 0.22 -0.96 16 12 C -0.10 -1.72 5.74 -21.29 -0.12 -1.84 16 13 C -0.05 -0.46 9.89 22.52 0.22 -0.24 16 14 C -0.16 -1.49 10.03 22.13 0.22 -1.27 16 15 C 0.13 2.13 11.15 85.02 0.95 3.08 16 16 N -0.49 -13.21 8.43 -187.95 -1.58 -14.79 16 17 C 0.13 3.25 6.61 40.61 0.27 3.52 16 18 C -0.12 -4.44 4.14 -10.37 -0.04 -4.49 16 19 C 0.13 5.09 8.10 83.18 0.67 5.77 16 20 N -0.64 -33.30 3.78 -737.98 -2.79 -36.09 16 21 C -0.23 -13.00 10.75 84.03 0.90 -12.10 16 22 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 24 N -0.95 -57.33 11.50 21.65 0.25 -57.08 16 25 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 C 0.16 7.19 6.54 83.27 0.54 7.73 16 30 H 0.06 1.99 6.33 -2.39 -0.02 1.98 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.16 6.77 -2.39 -0.02 2.14 16 33 H 0.41 10.23 6.62 -92.71 -0.61 9.61 16 34 H 0.16 2.90 6.36 -2.91 -0.02 2.88 16 35 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.19 0.14 8.06 -2.91 -0.02 0.11 16 37 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 38 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.93 6.75 -2.39 -0.02 1.91 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.04 1.68 5.45 -2.39 -0.01 1.66 16 44 H 0.04 1.96 7.12 -2.39 -0.02 1.94 16 Total: -1.00 -78.90 366.96 2.77 -76.13 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.45 Total: 16.51 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.94 Total: 12.11 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -6.37 Total: -130.67 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.33 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -78.90 2.77 -76.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970523178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.355 kcal (2) G-P(sol) polarization free energy of solvation -78.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds