Wall clock time and date at job start Wed Apr 1 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47053 * 2 1 4 4 N 1.46494 * 109.47105 * 239.99349 * 2 1 3 5 5 C 1.34781 * 119.99863 * 85.00356 * 4 2 1 6 6 O 1.21603 * 119.99769 * 359.97438 * 5 4 2 7 7 C 1.47446 * 120.00163 * 179.97438 * 5 4 2 8 8 C 1.38711 * 120.31526 * 0.02562 * 7 5 4 9 9 C 1.39104 * 120.69649 * 180.02562 * 8 7 5 10 10 F 1.35098 * 119.49631 * 179.97438 * 9 8 7 11 11 C 1.36537 * 120.99903 * 0.02562 * 9 8 7 12 12 C 1.40409 * 120.07531 * 359.97438 * 11 9 8 13 13 C 1.40811 * 121.24179 * 180.02562 * 12 11 9 14 14 C 1.36638 * 118.15473 * 179.08655 * 13 12 11 15 15 C 1.39239 * 119.90577 * 0.90516 * 14 13 12 16 16 N 1.31229 * 121.69478 * 359.38377 * 15 14 13 17 17 C 1.33358 * 121.35826 * 359.97438 * 16 15 14 18 18 C 1.53000 * 109.46774 * 119.99801 * 2 1 3 19 19 C 1.53498 * 114.20476 * 299.99885 * 18 2 1 20 20 N 1.47072 * 87.98531 * 87.52370 * 19 18 2 21 21 C 1.36937 * 136.05474 * 207.08946 * 20 19 18 22 22 H 1.07997 * 120.00175 * 6.65345 * 21 20 19 23 23 C 1.38812 * 119.99799 * 186.65772 * 21 20 19 24 24 N 1.31617 * 119.99791 * 6.44001 * 23 21 20 25 25 Si 1.86796 * 120.00183 * 186.44246 * 23 21 20 26 26 H 1.48498 * 109.47075 * 265.01704 * 25 23 21 27 27 H 1.48500 * 109.46850 * 25.01427 * 25 23 21 28 28 H 1.48496 * 109.47374 * 145.01871 * 25 23 21 29 29 C 1.47066 * 87.88224 * 27.34172 * 20 19 18 30 30 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47689 * 300.00395 * 1 2 3 32 32 H 1.08999 * 109.46965 * 60.00649 * 1 2 3 33 33 H 0.97005 * 120.00380 * 264.99872 * 4 2 1 34 34 H 1.07998 * 119.65500 * 0.02562 * 8 7 5 35 35 H 1.08000 * 119.95952 * 179.97438 * 11 9 8 36 36 H 1.07998 * 120.92092 * 359.95117 * 13 12 11 37 37 H 1.08001 * 120.04458 * 180.26716 * 14 13 12 38 38 H 1.07994 * 119.15398 * 179.36961 * 15 14 13 39 39 H 1.08994 * 113.41432 * 166.80325 * 18 2 1 40 40 H 1.09000 * 113.47213 * 332.73897 * 19 18 2 41 41 H 1.09002 * 113.52190 * 202.30784 * 19 18 2 42 42 H 0.97000 * 119.99892 * 179.97438 * 24 23 21 43 43 H 1.09000 * 113.46757 * 87.44265 * 29 20 19 44 44 H 1.08999 * 113.46471 * 217.87772 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8575 1.1613 -2.4119 7 6 2.6391 -0.7134 -3.5608 8 6 2.9708 -2.0592 -3.5058 9 6 3.4363 -2.7226 -4.6365 10 9 3.7528 -4.0334 -4.5554 11 6 3.5790 -2.0687 -5.8265 12 6 3.2541 -0.7062 -5.9242 13 6 3.3914 -0.0079 -7.1392 14 6 3.0390 1.3120 -7.1677 15 6 2.5777 1.9325 -6.0097 16 7 2.4575 1.2787 -4.8782 17 6 2.7724 -0.0139 -4.7868 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9132 -0.8124 2.9511 22 1 -1.2493 0.0949 3.4309 23 6 -1.7861 -1.8807 2.7972 24 7 -1.3448 -3.0289 2.3291 25 14 -3.5870 -1.6886 3.2543 26 1 -3.7999 -2.1730 4.6418 27 1 -3.9701 -0.2566 3.1657 28 1 -4.4227 -2.4834 2.3189 29 6 1.1518 -1.8858 1.7173 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 2.2491 -1.6319 -1.1524 34 1 2.8667 -2.5976 -2.5755 35 1 3.9423 -2.6001 -6.6937 36 1 3.7518 -0.5053 -8.0275 37 1 3.1279 1.8757 -8.0846 38 1 2.3122 2.9787 -6.0435 39 1 3.1024 -0.9609 1.2077 40 1 1.3944 0.9851 2.4938 41 1 2.2316 -0.3353 3.4159 42 1 -1.9547 -3.7755 2.2219 43 1 1.6788 -2.6121 2.3360 44 1 0.5833 -2.3509 0.9120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970523179.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:05 Heat of formation + Delta-G solvation = 32.501951 kcal Electronic energy + Delta-G solvation = -29415.798717 eV Core-core repulsion = 25249.523980 eV Total energy + Delta-G solvation = -4166.274738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.01328 -42.06292 -41.03444 -39.78343 -37.76397 -35.86680 -34.56863 -34.15137 -32.10592 -31.19538 -30.44403 -29.57188 -26.44534 -26.24417 -25.68392 -24.62949 -24.43970 -22.97921 -21.45836 -20.33565 -19.68400 -18.93067 -18.62249 -18.33016 -17.43743 -16.98851 -16.87880 -16.80469 -16.50589 -16.18769 -16.01032 -15.88089 -15.67757 -15.42069 -15.02766 -14.64033 -14.48906 -14.16212 -13.99920 -13.86593 -13.51137 -13.34430 -13.04332 -12.92594 -12.76979 -12.64221 -12.56591 -12.45505 -12.39192 -12.09829 -11.66570 -11.60010 -11.49955 -11.18913 -10.87593 -10.73834 -10.18767 -10.05057 -9.84944 -9.35812 -8.78770 -7.87987 -5.16281 -1.03274 -0.37555 0.68670 1.44982 1.46302 1.47908 1.54510 2.05133 2.17788 2.49478 2.97009 3.03860 3.20344 3.35888 3.37774 3.56288 3.58902 3.70266 3.75744 3.90117 3.94139 4.01123 4.23651 4.33294 4.37786 4.52576 4.53666 4.61801 4.70590 4.71263 4.82349 4.86621 4.89068 5.02118 5.03467 5.09568 5.13123 5.18210 5.28020 5.41467 5.51536 5.54646 5.64847 5.71732 5.73482 5.97298 6.56733 6.96744 7.01553 7.26608 7.65563 8.67427 9.30608 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014972 B = 0.002738 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.719613 B =10222.370877 C =10780.670437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.188 3.812 3 H 0.079 0.921 4 N -0.709 5.709 5 C 0.551 3.449 6 O -0.539 6.539 7 C -0.104 4.104 8 C -0.087 4.087 9 C 0.083 3.917 10 F -0.133 7.133 11 C -0.086 4.086 12 C -0.102 4.102 13 C -0.048 4.048 14 C -0.161 4.161 15 C 0.124 3.876 16 N -0.492 5.492 17 C 0.128 3.872 18 C -0.129 4.129 19 C 0.124 3.876 20 N -0.630 5.630 21 C -0.214 4.214 22 H 0.079 0.921 23 C -0.060 4.060 24 N -0.947 5.947 25 Si 0.964 3.036 26 H -0.289 1.289 27 H -0.271 1.271 28 H -0.297 1.297 29 C 0.165 3.835 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.406 0.594 34 H 0.160 0.840 35 H 0.185 0.815 36 H 0.187 0.813 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.109 0.891 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.246 0.754 43 H 0.019 0.981 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.347 3.275 -23.274 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.097 0.903 4 N -0.362 5.362 5 C 0.338 3.662 6 O -0.416 6.416 7 C -0.108 4.108 8 C -0.108 4.108 9 C 0.063 3.937 10 F -0.112 7.112 11 C -0.105 4.105 12 C -0.105 4.105 13 C -0.074 4.074 14 C -0.180 4.180 15 C -0.047 4.047 16 N -0.199 5.199 17 C 0.005 3.995 18 C -0.149 4.149 19 C -0.002 4.002 20 N -0.356 5.356 21 C -0.342 4.342 22 H 0.097 0.903 23 C -0.253 4.253 24 N -0.596 5.596 25 Si 0.793 3.207 26 H -0.216 1.216 27 H -0.196 1.196 28 H -0.224 1.224 29 C 0.040 3.960 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.243 0.757 34 H 0.178 0.822 35 H 0.203 0.797 36 H 0.204 0.796 37 H 0.199 0.801 38 H 0.195 0.805 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.497 4.351 -22.373 27.012 hybrid contribution -0.973 -1.364 0.364 1.714 sum 13.525 2.987 -22.009 26.004 Atomic orbital electron populations 1.21910 0.95591 1.01293 0.99756 1.20299 0.93324 0.95699 0.82324 0.90338 1.45965 1.66691 1.14377 1.09168 1.18170 0.78293 0.86586 0.83173 1.90813 1.49772 1.16350 1.84667 1.19695 1.04249 0.93596 0.93228 1.21589 0.96323 0.93005 0.99885 1.17137 1.02773 0.78943 0.94818 1.91557 1.90576 1.32091 1.96960 1.21445 0.97997 0.93093 0.97964 1.18769 1.01837 0.94650 0.95196 1.21956 0.94540 0.94459 0.96435 1.22394 0.98868 0.96064 1.00723 1.23758 0.91890 1.01404 0.87672 1.68282 1.15286 1.07660 1.28719 1.18879 0.97285 0.90836 0.92542 1.23138 0.99667 0.98429 0.93640 1.22536 0.87368 0.95900 0.94381 1.46018 1.04709 1.22231 1.62617 1.19146 0.85213 0.98414 1.31447 0.90292 1.25420 1.01594 0.95349 1.02940 1.69981 1.34479 1.02184 1.52980 0.85275 0.80976 0.77471 0.76973 1.21632 1.19611 1.22401 1.22037 0.89558 0.91351 0.93085 0.93982 0.91524 0.95937 0.75673 0.82247 0.79736 0.79576 0.80082 0.80545 0.87260 0.93193 0.93130 0.94539 0.96310 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.06 71.98 0.58 -4.92 16 2 C 0.19 6.74 2.76 44.99 0.12 6.86 16 3 H 0.08 2.91 7.58 -2.39 -0.02 2.89 16 4 N -0.71 -22.31 5.03 -445.79 -2.24 -24.55 16 5 C 0.55 18.85 7.73 86.67 0.67 19.52 16 6 O -0.54 -22.46 14.84 -4.04 -0.06 -22.52 16 7 C -0.10 -2.91 5.90 -19.86 -0.12 -3.03 16 8 C -0.09 -1.90 9.49 22.59 0.21 -1.68 16 9 C 0.08 1.52 7.22 22.08 0.16 1.68 16 10 F -0.13 -2.49 17.24 44.97 0.78 -1.72 16 11 C -0.09 -1.22 9.71 22.40 0.22 -1.00 16 12 C -0.10 -1.82 5.74 -21.29 -0.12 -1.94 16 13 C -0.05 -0.50 9.89 22.52 0.22 -0.28 16 14 C -0.16 -1.71 10.03 22.14 0.22 -1.49 16 15 C 0.12 2.34 11.15 85.02 0.95 3.29 16 16 N -0.49 -14.36 8.43 -187.95 -1.58 -15.94 16 17 C 0.13 3.43 6.61 40.62 0.27 3.70 16 18 C -0.13 -4.46 4.25 -10.37 -0.04 -4.50 16 19 C 0.12 4.80 7.86 83.18 0.65 5.45 16 20 N -0.63 -30.91 2.16 -737.93 -1.60 -32.51 16 21 C -0.21 -11.74 9.57 84.03 0.80 -10.94 16 22 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 23 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 24 N -0.95 -56.27 11.81 21.65 0.26 -56.01 16 25 Si 0.96 46.25 29.56 68.60 2.03 48.28 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 C 0.17 7.36 6.22 83.26 0.52 7.87 16 30 H 0.04 2.03 6.32 -2.38 -0.02 2.02 16 31 H 0.07 3.13 5.93 -2.39 -0.01 3.11 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.41 10.72 6.62 -92.70 -0.61 10.11 16 34 H 0.16 2.95 6.36 -2.91 -0.02 2.94 16 35 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.19 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 38 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.04 1.95 6.17 -2.39 -0.01 1.94 16 Total: -1.00 -78.19 366.13 3.80 -74.39 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.44 Total: 14.89 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 5.79 Total: 15.69 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -5.17 Total: -129.01 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -78.19 3.80 -74.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970523179.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.889 kcal (2) G-P(sol) polarization free energy of solvation -78.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds