Wall clock time and date at job start Wed Apr 1 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.46898 * 119.99837 * 2 1 3 5 5 C 1.34777 * 120.00195 * 274.99732 * 4 2 1 6 6 O 1.21563 * 119.99934 * 0.02562 * 5 4 2 7 7 C 1.47778 * 120.00047 * 180.27940 * 5 4 2 8 8 C 1.40609 * 119.78830 * 359.72591 * 7 5 4 9 9 C 1.35917 * 120.89080 * 180.02562 * 8 7 5 10 10 F 1.35095 * 119.96822 * 179.97438 * 9 8 7 11 11 C 1.40956 * 120.05985 * 0.02562 * 9 8 7 12 12 N 1.33630 * 120.82897 * 179.97438 * 11 9 8 13 13 C 1.31117 * 121.39402 * 179.97438 * 12 11 9 14 14 C 1.39318 * 121.76186 * 0.04390 * 13 12 11 15 15 C 1.36570 * 119.90603 * 359.97438 * 14 13 12 16 16 C 1.40899 * 118.15547 * 0.02562 * 15 14 13 17 17 C 1.38530 * 119.79069 * 179.45289 * 7 5 4 18 18 C 1.53001 * 109.46984 * 239.99986 * 2 1 3 19 19 C 1.53946 * 113.73697 * 158.74213 * 18 2 1 20 20 N 1.47813 * 86.03403 * 222.08470 * 19 18 2 21 21 C 1.36940 * 134.45400 * 204.64757 * 20 19 18 22 22 H 1.08003 * 119.99504 * 179.86568 * 21 20 19 23 23 C 1.38809 * 120.00589 * 359.86213 * 21 20 19 24 24 N 1.31621 * 119.99455 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00490 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46803 * 60.00208 * 25 23 21 27 27 H 1.48496 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47122 * 300.00613 * 25 23 21 29 29 C 1.47579 * 91.05080 * 24.55169 * 20 19 18 30 30 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 31 31 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47470 * 299.99796 * 1 2 3 33 33 H 0.97000 * 120.00069 * 95.00460 * 4 2 1 34 34 H 1.08004 * 119.55397 * 359.97438 * 8 7 5 35 35 H 1.07996 * 119.11541 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.04368 * 179.97438 * 14 13 12 37 37 H 1.07999 * 120.92454 * 179.97438 * 15 14 13 38 38 H 1.08003 * 120.27569 * 359.97438 * 17 7 5 39 39 H 1.08991 * 112.94641 * 290.33125 * 18 2 1 40 40 H 1.09001 * 113.77450 * 336.34726 * 19 18 2 41 41 H 1.09005 * 113.77064 * 107.74707 * 19 18 2 42 42 H 0.97004 * 119.99952 * 179.97438 * 24 23 21 43 43 H 1.09010 * 113.76623 * 221.15473 * 29 20 19 44 44 H 1.08998 * 113.87187 * 89.76979 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8575 1.1612 2.4118 7 6 2.6454 -0.7133 3.5622 8 6 2.9785 -2.0777 3.4941 9 6 3.4384 -2.7392 4.5887 10 9 3.7525 -4.0503 4.5023 11 6 3.5870 -2.0588 5.8142 12 7 4.0373 -2.6942 6.9001 13 6 4.1802 -2.0721 8.0454 14 6 3.8705 -0.7215 8.1900 15 6 3.4049 -0.0114 7.1203 16 6 3.2527 -0.6836 5.8914 17 6 2.7868 -0.0153 4.7504 18 6 2.0399 -0.7213 -1.2493 19 6 3.4847 -0.3520 -1.6316 20 7 2.9978 -0.3176 -3.0268 21 6 3.5875 -0.4756 -4.2526 22 1 2.9927 -0.4037 -5.1512 23 6 4.9496 -0.7283 -4.3402 24 7 5.6742 -0.8164 -3.2450 25 14 5.7538 -0.9445 -6.0122 26 1 5.5656 0.2902 -6.8154 27 1 7.2052 -1.2031 -5.8337 28 1 5.1298 -2.0932 -6.7168 29 6 1.6213 -0.0471 -2.5684 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 2.8666 -2.6074 2.5595 35 1 4.5476 -2.6214 8.8995 36 1 3.9984 -0.2368 9.1465 37 1 3.1593 1.0361 7.2140 38 1 2.5348 1.0338 4.7989 39 1 1.8528 -1.7947 -1.2263 40 1 3.8047 0.6191 -1.2539 41 1 4.2071 -1.1447 -1.4366 42 1 6.6261 -0.9933 -3.3062 43 1 0.8586 -0.5969 -3.1199 44 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970594628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:39 Heat of formation + Delta-G solvation = 31.354390 kcal Electronic energy + Delta-G solvation = -28671.149797 eV Core-core repulsion = 24504.825298 eV Total energy + Delta-G solvation = -4166.324500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.10244 -41.22877 -39.92769 -38.22101 -36.91906 -34.94034 -33.74488 -32.34225 -31.53016 -30.26306 -29.92823 -27.53184 -25.57460 -24.68275 -24.54518 -23.90329 -22.53640 -21.68114 -20.69724 -19.54598 -18.66832 -18.14544 -17.67970 -16.78738 -16.57684 -16.18716 -16.07639 -15.77706 -15.28823 -14.93670 -14.85125 -14.62127 -14.32388 -14.24427 -13.86068 -13.62195 -13.56511 -13.16808 -13.10783 -12.63856 -12.44538 -12.21677 -12.02007 -11.85089 -11.67502 -11.34383 -11.30085 -10.90507 -10.88184 -10.73864 -10.39514 -10.11834 -10.02807 -9.81958 -9.78169 -9.42327 -9.36856 -8.90432 -8.79388 -8.52605 -6.87740 -5.76277 -3.08687 -0.22721 0.13345 1.40908 2.00811 3.07095 3.13177 3.39914 3.43903 3.45366 3.52830 3.62568 3.81438 4.16569 4.27264 4.37531 4.44385 4.45691 4.65662 4.75457 4.89988 5.06369 5.09933 5.24884 5.26064 5.34494 5.43818 5.50075 5.52738 5.62703 5.66085 5.75759 5.81905 5.92262 5.98016 6.00191 6.21176 6.29139 6.32881 6.38196 6.54606 6.62862 6.75497 7.22570 7.35123 7.36064 7.52909 7.55658 7.98334 8.18492 9.04865 9.71289 10.60161 11.40690 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.002370 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.469063 B =11813.720265 C =12761.378703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.709 5.709 5 C 0.559 3.441 6 O -0.535 6.535 7 C -0.102 4.102 8 C -0.114 4.114 9 C 0.125 3.875 10 F -0.118 7.118 11 C 0.111 3.889 12 N -0.468 5.468 13 C 0.139 3.861 14 C -0.171 4.171 15 C -0.046 4.046 16 C -0.090 4.090 17 C -0.037 4.037 18 C -0.148 4.148 19 C 0.170 3.830 20 N -0.613 5.613 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.131 3.869 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.400 0.600 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.088 0.912 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.044 0.956 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -0.927 24.244 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.359 5.359 5 C 0.345 3.655 6 O -0.413 6.413 7 C -0.106 4.106 8 C -0.135 4.135 9 C 0.105 3.895 10 F -0.096 7.096 11 C -0.011 4.011 12 N -0.176 5.176 13 C -0.033 4.033 14 C -0.191 4.191 15 C -0.072 4.072 16 C -0.092 4.092 17 C -0.057 4.057 18 C -0.168 4.168 19 C 0.045 3.955 20 N -0.339 5.339 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.004 3.996 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.235 0.765 34 H 0.167 0.833 35 H 0.182 0.818 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.107 0.893 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.311 -1.112 23.813 24.935 hybrid contribution 0.601 0.100 -0.844 1.041 sum -6.711 -1.012 22.969 23.950 Atomic orbital electron populations 1.22136 0.95459 1.01881 1.02223 1.21170 0.93611 0.97659 0.82997 0.89174 1.46048 1.66104 1.14182 1.09539 1.17978 0.78070 0.86475 0.82938 1.90781 1.50535 1.15132 1.84881 1.19782 1.02749 0.92998 0.95048 1.20975 0.99558 0.94389 0.98574 1.16859 1.01242 0.79004 0.92406 1.91556 1.90144 1.31398 1.96552 1.18893 0.98805 0.90805 0.92647 1.68054 1.12459 1.38191 0.98848 1.23088 0.93189 0.92125 0.94929 1.21987 1.00847 0.95861 1.00402 1.21576 0.94182 1.00542 0.90922 1.18591 1.01752 0.93448 0.95429 1.21486 0.93799 1.00668 0.89732 1.23846 1.01024 0.99714 0.92233 1.22305 0.91311 0.98545 0.83337 1.45987 1.03282 1.82610 1.02008 1.18973 0.91429 1.41784 0.82946 0.90324 1.24786 0.96057 1.02356 0.97283 1.69805 1.06163 1.55060 1.25824 0.86202 0.78433 0.77987 0.83151 1.21193 1.21563 1.21086 1.22480 0.89685 0.96619 0.90773 0.91250 0.92645 0.92700 0.76495 0.83313 0.81818 0.83859 0.83389 0.82909 0.89329 0.95588 0.91011 0.93607 0.93733 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.31 37.16 0.35 -1.67 16 2 C 0.15 2.22 2.38 -67.93 -0.16 2.06 16 3 H 0.09 1.54 7.42 -51.93 -0.39 1.15 16 4 N -0.71 -9.29 5.03 -54.77 -0.28 -9.57 16 5 C 0.56 7.73 7.73 -12.36 -0.10 7.63 16 6 O -0.54 -8.92 15.97 5.31 0.08 -8.84 16 7 C -0.10 -1.19 5.87 -104.99 -0.62 -1.80 16 8 C -0.11 -1.23 9.41 -39.52 -0.37 -1.60 16 9 C 0.13 1.50 7.29 -39.39 -0.29 1.21 16 10 F -0.12 -1.54 17.10 2.25 0.04 -1.50 16 11 C 0.11 1.29 6.61 -84.72 -0.56 0.73 16 12 N -0.47 -5.26 10.19 -10.88 -0.11 -5.37 16 13 C 0.14 1.03 11.15 -17.46 -0.19 0.84 16 14 C -0.17 -0.97 10.03 -39.78 -0.40 -1.37 16 15 C -0.05 -0.32 9.89 -39.18 -0.39 -0.70 16 16 C -0.09 -0.88 5.74 -106.82 -0.61 -1.49 16 17 C -0.04 -0.38 9.34 -38.74 -0.36 -0.74 16 18 C -0.15 -2.58 3.47 -89.70 -0.31 -2.89 16 19 C 0.17 3.92 7.08 -2.84 -0.02 3.90 16 20 N -0.61 -15.62 3.70 -177.71 -0.66 -16.28 16 21 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 22 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.92 -27.41 11.39 55.49 0.63 -26.78 16 25 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 C 0.13 2.58 7.64 -2.97 -0.02 2.56 16 30 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.43 6.59 -40.82 -0.27 4.16 16 34 H 0.15 1.33 6.35 -52.48 -0.33 1.00 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 37 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.15 1.42 7.61 -52.48 -0.40 1.02 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 41 H 0.07 1.82 7.17 -51.93 -0.37 1.45 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -34.97 375.00 -9.46 -44.44 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.49 Total: 1.16 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -4.31 Total: -0.13 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.41 Total: -57.99 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.97 -9.46 -44.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970594628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.791 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds