Wall clock time and date at job start Wed Apr 1 2020 02:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.46898 * 119.99837 * 2 1 3 5 5 C 1.34777 * 120.00195 * 274.99732 * 4 2 1 6 6 O 1.21563 * 119.99934 * 0.02562 * 5 4 2 7 7 C 1.47778 * 120.00047 * 180.27940 * 5 4 2 8 8 C 1.40609 * 119.78830 * 359.72591 * 7 5 4 9 9 C 1.35917 * 120.89080 * 180.02562 * 8 7 5 10 10 F 1.35095 * 119.96822 * 179.97438 * 9 8 7 11 11 C 1.40956 * 120.05985 * 0.02562 * 9 8 7 12 12 N 1.33630 * 120.82897 * 179.97438 * 11 9 8 13 13 C 1.31117 * 121.39402 * 179.97438 * 12 11 9 14 14 C 1.39318 * 121.76186 * 0.04390 * 13 12 11 15 15 C 1.36570 * 119.90603 * 359.97438 * 14 13 12 16 16 C 1.40899 * 118.15547 * 0.02562 * 15 14 13 17 17 C 1.38530 * 119.79069 * 179.45289 * 7 5 4 18 18 C 1.53001 * 109.46984 * 239.99986 * 2 1 3 19 19 C 1.53946 * 113.73697 * 158.74213 * 18 2 1 20 20 N 1.47813 * 86.03403 * 222.08470 * 19 18 2 21 21 C 1.36940 * 134.45400 * 204.64757 * 20 19 18 22 22 H 1.08003 * 119.99504 * 179.86568 * 21 20 19 23 23 C 1.38809 * 120.00589 * 359.86213 * 21 20 19 24 24 N 1.31621 * 119.99455 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00490 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46803 * 60.00208 * 25 23 21 27 27 H 1.48496 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47122 * 300.00613 * 25 23 21 29 29 C 1.47579 * 91.05080 * 24.55169 * 20 19 18 30 30 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 31 31 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47470 * 299.99796 * 1 2 3 33 33 H 0.97000 * 120.00069 * 95.00460 * 4 2 1 34 34 H 1.08004 * 119.55397 * 359.97438 * 8 7 5 35 35 H 1.07996 * 119.11541 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.04368 * 179.97438 * 14 13 12 37 37 H 1.07999 * 120.92454 * 179.97438 * 15 14 13 38 38 H 1.08003 * 120.27569 * 359.97438 * 17 7 5 39 39 H 1.08991 * 112.94641 * 290.33125 * 18 2 1 40 40 H 1.09001 * 113.77450 * 336.34726 * 19 18 2 41 41 H 1.09005 * 113.77064 * 107.74707 * 19 18 2 42 42 H 0.97004 * 119.99952 * 179.97438 * 24 23 21 43 43 H 1.09010 * 113.76623 * 221.15473 * 29 20 19 44 44 H 1.08998 * 113.87187 * 89.76979 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8575 1.1612 2.4118 7 6 2.6454 -0.7133 3.5622 8 6 2.9785 -2.0777 3.4941 9 6 3.4384 -2.7392 4.5887 10 9 3.7525 -4.0503 4.5023 11 6 3.5870 -2.0588 5.8142 12 7 4.0373 -2.6942 6.9001 13 6 4.1802 -2.0721 8.0454 14 6 3.8705 -0.7215 8.1900 15 6 3.4049 -0.0114 7.1203 16 6 3.2527 -0.6836 5.8914 17 6 2.7868 -0.0153 4.7504 18 6 2.0399 -0.7213 -1.2493 19 6 3.4847 -0.3520 -1.6316 20 7 2.9978 -0.3176 -3.0268 21 6 3.5875 -0.4756 -4.2526 22 1 2.9927 -0.4037 -5.1512 23 6 4.9496 -0.7283 -4.3402 24 7 5.6742 -0.8164 -3.2450 25 14 5.7538 -0.9445 -6.0122 26 1 5.5656 0.2902 -6.8154 27 1 7.2052 -1.2031 -5.8337 28 1 5.1298 -2.0932 -6.7168 29 6 1.6213 -0.0471 -2.5684 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 2.8666 -2.6074 2.5595 35 1 4.5476 -2.6214 8.8995 36 1 3.9984 -0.2368 9.1465 37 1 3.1593 1.0361 7.2140 38 1 2.5348 1.0338 4.7989 39 1 1.8528 -1.7947 -1.2263 40 1 3.8047 0.6191 -1.2539 41 1 4.2071 -1.1447 -1.4366 42 1 6.6261 -0.9933 -3.3062 43 1 0.8586 -0.5969 -3.1199 44 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970594628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:38 Heat of formation + Delta-G solvation = 8.758009 kcal Electronic energy + Delta-G solvation = -28672.129650 eV Core-core repulsion = 24504.825298 eV Total energy + Delta-G solvation = -4167.304352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.01175 -41.98232 -41.01976 -39.73773 -37.77867 -36.27002 -34.42917 -34.17977 -32.60217 -31.19285 -30.85071 -29.34367 -26.79211 -26.04982 -25.47595 -25.24449 -23.44628 -22.90291 -21.84237 -20.96850 -19.52863 -19.15665 -18.76019 -18.43439 -17.52814 -17.26310 -16.96052 -16.90734 -16.55766 -16.03210 -16.00383 -15.76500 -15.64448 -15.16631 -15.04763 -14.85270 -14.66357 -14.21967 -14.07051 -13.84188 -13.48428 -13.38812 -13.25818 -13.08593 -12.89009 -12.76241 -12.69741 -12.64297 -12.56184 -12.02037 -11.74595 -11.53619 -11.51277 -11.28021 -11.04564 -10.85477 -10.66419 -10.19057 -9.98287 -9.32140 -8.92030 -7.90604 -5.24112 -0.95629 -0.57453 0.71903 1.19385 1.44489 1.48015 1.54128 2.02343 2.21617 2.47249 2.78683 2.88453 3.12229 3.29676 3.35544 3.42632 3.56170 3.64534 3.76612 3.86201 3.91915 3.95347 4.14310 4.30372 4.35714 4.44908 4.47954 4.57676 4.60663 4.75000 4.76884 4.83655 4.86518 4.87523 4.94531 5.02588 5.09557 5.16290 5.25732 5.34525 5.35657 5.45484 5.55429 5.62288 5.66398 5.93749 6.46726 6.73224 6.91444 7.11391 7.61029 8.56686 9.25965 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.002370 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.469063 B =11813.720265 C =12761.378703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.066 0.934 4 N -0.705 5.705 5 C 0.562 3.438 6 O -0.568 6.568 7 C -0.123 4.123 8 C -0.107 4.107 9 C 0.099 3.901 10 F -0.132 7.132 11 C 0.096 3.904 12 N -0.512 5.512 13 C 0.142 3.858 14 C -0.159 4.159 15 C -0.046 4.046 16 C -0.103 4.103 17 C -0.023 4.023 18 C -0.111 4.111 19 C 0.167 3.833 20 N -0.646 5.646 21 C -0.235 4.235 22 H 0.085 0.915 23 C -0.070 4.070 24 N -0.955 5.955 25 Si 0.979 3.021 26 H -0.278 1.278 27 H -0.296 1.296 28 H -0.274 1.274 29 C 0.131 3.869 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.410 0.590 34 H 0.160 0.840 35 H 0.196 0.804 36 H 0.187 0.813 37 H 0.180 0.820 38 H 0.163 0.837 39 H 0.104 0.896 40 H 0.005 0.995 41 H 0.040 0.960 42 H 0.247 0.753 43 H 0.065 0.935 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -0.538 25.971 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.054 3.946 3 H 0.084 0.916 4 N -0.356 5.356 5 C 0.350 3.650 6 O -0.449 6.449 7 C -0.126 4.126 8 C -0.128 4.128 9 C 0.079 3.921 10 F -0.110 7.110 11 C -0.027 4.027 12 N -0.221 5.221 13 C -0.029 4.029 14 C -0.178 4.178 15 C -0.071 4.071 16 C -0.105 4.105 17 C -0.043 4.043 18 C -0.131 4.131 19 C 0.041 3.959 20 N -0.372 5.372 21 C -0.363 4.363 22 H 0.103 0.897 23 C -0.263 4.263 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.205 1.205 27 H -0.222 1.222 28 H -0.199 1.199 29 C 0.006 3.994 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.177 0.823 35 H 0.213 0.787 36 H 0.204 0.796 37 H 0.197 0.803 38 H 0.181 0.819 39 H 0.122 0.878 40 H 0.023 0.977 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.582 -0.736 25.544 26.957 hybrid contribution 0.994 0.035 -1.183 1.546 sum -7.588 -0.702 24.360 25.525 Atomic orbital electron populations 1.22057 0.93005 1.03195 1.02554 1.20912 0.95284 0.95983 0.82389 0.91559 1.45958 1.65982 1.14650 1.09017 1.18225 0.77278 0.86065 0.83419 1.90755 1.52168 1.16472 1.85457 1.19579 1.05047 0.93318 0.94686 1.20990 0.98917 0.94136 0.98800 1.17089 1.02878 0.78762 0.93389 1.91506 1.90540 1.32304 1.96687 1.19073 0.99170 0.91648 0.92776 1.68078 1.14540 1.39519 0.99947 1.23818 0.91144 0.93376 0.94541 1.22445 0.98628 0.94941 1.01754 1.22024 0.93292 1.02024 0.89780 1.18774 1.02224 0.92967 0.96573 1.21681 0.92127 1.00974 0.89474 1.23462 0.96257 1.00590 0.92781 1.22191 0.94011 0.96508 0.83172 1.46434 1.05967 1.82881 1.01942 1.19413 0.91916 1.40522 0.84455 0.89729 1.25654 0.96827 1.03024 1.00810 1.70010 1.05825 1.56694 1.27831 0.85144 0.76850 0.78262 0.79046 1.20457 1.22204 1.19932 1.22678 0.87572 0.97639 0.91478 0.90509 0.90817 0.92797 0.75291 0.82251 0.78725 0.79618 0.80255 0.81901 0.87769 0.97731 0.94114 0.94392 0.91683 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.31 71.98 0.67 -2.83 16 2 C 0.16 4.62 2.38 44.99 0.11 4.73 16 3 H 0.07 2.29 7.42 -2.39 -0.02 2.27 16 4 N -0.71 -18.39 5.03 -445.47 -2.24 -20.63 16 5 C 0.56 15.63 7.73 86.77 0.67 16.31 16 6 O -0.57 -19.08 15.97 -3.91 -0.06 -19.14 16 7 C -0.12 -2.87 5.87 -20.11 -0.12 -2.99 16 8 C -0.11 -2.40 9.41 22.31 0.21 -2.19 16 9 C 0.10 2.46 7.29 22.40 0.16 2.63 16 10 F -0.13 -3.63 17.10 44.97 0.77 -2.86 16 11 C 0.10 2.22 6.61 40.40 0.27 2.49 16 12 N -0.51 -11.20 10.19 -188.33 -1.92 -13.12 16 13 C 0.14 1.76 11.15 85.06 0.95 2.70 16 14 C -0.16 -1.19 10.03 22.14 0.22 -0.97 16 15 C -0.05 -0.48 9.89 22.53 0.22 -0.26 16 16 C -0.10 -1.90 5.74 -21.29 -0.12 -2.03 16 17 C -0.02 -0.46 9.34 22.82 0.21 -0.24 16 18 C -0.11 -3.80 3.47 -10.13 -0.04 -3.84 16 19 C 0.17 7.92 7.08 86.44 0.61 8.54 16 20 N -0.65 -33.23 3.70 -716.15 -2.65 -35.88 16 21 C -0.23 -13.30 10.70 84.03 0.90 -12.40 16 22 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.95 -58.67 11.39 21.65 0.25 -58.42 16 25 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 27 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 29 C 0.13 5.03 7.64 86.48 0.66 5.69 16 30 H 0.08 1.69 7.52 -2.39 -0.02 1.67 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 8.97 6.59 -92.71 -0.61 8.36 16 34 H 0.16 2.96 6.35 -2.91 -0.02 2.95 16 35 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.19 -0.17 8.06 -2.91 -0.02 -0.19 16 37 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.16 2.85 7.61 -2.91 -0.02 2.83 16 39 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.00 0.25 7.99 -2.39 -0.02 0.23 16 41 H 0.04 2.17 7.17 -2.38 -0.02 2.15 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -79.37 375.00 2.66 -76.71 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.44 Total: 13.27 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.06 Total: 11.72 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -6.56 Total: -128.05 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.14 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.77 Total: -2.86 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -79.37 2.66 -76.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970594628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.467 kcal (2) G-P(sol) polarization free energy of solvation -79.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds