Wall clock time and date at job start Wed Apr 1 2020 02:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 119.99814 * 2 1 4 4 H 1.08006 * 119.99358 * 153.25293 * 3 2 1 5 5 C 1.38807 * 120.00275 * 332.97591 * 3 2 1 6 6 N 1.31617 * 120.00035 * 350.01970 * 5 3 2 7 7 Si 1.86796 * 120.00073 * 170.01675 * 5 3 2 8 8 H 1.48505 * 109.47148 * 90.00083 * 7 5 3 9 9 H 1.48496 * 109.47230 * 210.00048 * 7 5 3 10 10 H 1.48497 * 109.47246 * 330.00627 * 7 5 3 11 11 C 1.46500 * 119.99842 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.64056 * 181.68260 * 11 2 1 13 13 C 1.55157 * 110.72397 * 305.02310 * 11 2 1 14 14 C 1.54904 * 101.58474 * 153.86410 * 13 11 2 15 15 N 1.47425 * 104.83288 * 322.99147 * 14 13 11 16 16 C 1.34776 * 125.65243 * 204.16359 * 15 14 13 17 17 O 1.21568 * 119.99319 * 354.68078 * 16 15 14 18 18 C 1.47770 * 120.00543 * 174.67839 * 16 15 14 19 19 C 1.40613 * 119.78744 * 8.31536 * 18 16 15 20 20 C 1.35914 * 120.88713 * 179.97438 * 19 18 16 21 21 F 1.35101 * 119.96468 * 180.02562 * 20 19 18 22 22 C 1.40960 * 120.06530 * 359.97438 * 20 19 18 23 23 N 1.33629 * 120.82778 * 180.02562 * 22 20 19 24 24 C 1.31108 * 121.39377 * 179.97438 * 23 22 20 25 25 C 1.39325 * 121.76190 * 0.04606 * 24 23 22 26 26 C 1.36573 * 119.90282 * 359.97438 * 25 24 23 27 27 C 1.40892 * 118.15799 * 359.97438 * 26 25 24 28 28 C 1.38539 * 119.79183 * 188.03544 * 18 16 15 29 29 C 1.47029 * 108.70385 * 24.12856 * 15 14 13 30 30 H 1.08994 * 109.47208 * 92.43309 * 1 2 3 31 31 H 1.09000 * 109.46746 * 212.43927 * 1 2 3 32 32 H 1.09001 * 109.46778 * 332.42736 * 1 2 3 33 33 H 0.97003 * 120.00371 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00236 * 271.94201 * 13 11 2 35 35 H 1.08999 * 111.00125 * 35.78937 * 13 11 2 36 36 H 1.08992 * 110.36874 * 204.15237 * 14 13 11 37 37 H 1.09005 * 110.36785 * 81.82936 * 14 13 11 38 38 H 1.07997 * 119.55237 * 359.97225 * 19 18 16 39 39 H 1.08000 * 119.11930 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.04910 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.91958 * 180.02562 * 26 25 24 42 42 H 1.07992 * 120.27214 * 0.02562 * 28 18 16 43 43 H 1.09000 * 109.87978 * 239.52304 * 29 15 14 44 44 H 1.09001 * 110.01122 * 118.43091 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1431 1.2359 0.4210 5 6 1.5693 2.3224 -0.5462 6 7 0.4528 2.2244 -1.2362 7 14 2.3729 3.9909 -0.3019 8 1 3.3272 4.2478 -1.4104 9 1 1.3287 5.0467 -0.2930 10 1 3.1019 4.0046 0.9918 11 6 2.1975 -1.2688 -0.0006 12 1 3.2726 -1.0918 0.0295 13 6 1.7508 -2.1612 1.1874 14 6 2.0638 -3.5786 0.6466 15 7 1.7323 -3.5167 -0.7885 16 6 1.4042 -4.5682 -1.5651 17 8 1.4573 -5.6962 -1.1148 18 6 0.9798 -4.3502 -2.9636 19 6 1.0862 -3.0695 -3.5343 20 6 0.7030 -2.8439 -4.8186 21 9 0.8139 -1.6060 -5.3483 22 6 0.1910 -3.9004 -5.5987 23 7 -0.1898 -3.6958 -6.8632 24 6 -0.6670 -4.6704 -7.5989 25 6 -0.8025 -5.9653 -7.1027 26 6 -0.4326 -6.2442 -5.8179 27 6 0.0807 -5.1943 -5.0310 28 6 0.4850 -5.4100 -3.7060 29 6 1.8182 -2.1176 -1.2323 30 1 -0.3633 -0.0436 -1.0267 31 1 -0.3633 -0.8673 0.5513 32 1 -0.3633 0.9110 0.4757 33 1 0.0474 3.0186 -1.6182 34 1 2.3374 -1.9453 2.0804 35 1 0.6851 -2.0447 1.3844 36 1 1.4431 -4.3214 1.1476 37 1 3.1199 -3.8118 0.7823 38 1 1.4777 -2.2542 -2.9441 39 1 -0.9634 -4.4640 -8.6167 40 1 -1.1994 -6.7472 -7.7331 41 1 -0.5301 -7.2421 -5.4166 42 1 0.4082 -6.3935 -3.2666 43 1 0.8540 -1.7930 -1.6236 44 1 2.5834 -2.0167 -2.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972554556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:47 Heat of formation + Delta-G solvation = 36.825123 kcal Electronic energy + Delta-G solvation = -29881.669531 eV Core-core repulsion = 25715.582260 eV Total energy + Delta-G solvation = -4166.087271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.75130 -41.09244 -39.99208 -37.69639 -36.74752 -34.84992 -33.56945 -32.02806 -31.23379 -29.97336 -29.63356 -28.10537 -26.11727 -25.32394 -24.48683 -23.40118 -22.57173 -21.99409 -20.02129 -19.62438 -18.81827 -17.88413 -17.18804 -17.06966 -16.34400 -15.99235 -15.71752 -15.63840 -15.32233 -14.94669 -14.90579 -14.45209 -14.14633 -14.00167 -13.50756 -13.43813 -13.35602 -12.93223 -12.88512 -12.68110 -12.44771 -12.30657 -12.00570 -11.66285 -11.64937 -11.39868 -10.90228 -10.79241 -10.68060 -10.53051 -10.51886 -10.30347 -10.07670 -9.92620 -9.84061 -9.74395 -9.13427 -8.62198 -8.55242 -8.22568 -6.84607 -5.85310 -3.35427 -0.03946 0.35575 1.60245 2.20521 3.03092 3.21100 3.33300 3.40515 3.41488 3.78643 3.80350 4.05261 4.29270 4.36011 4.42624 4.55897 4.57154 4.85360 4.93571 5.03166 5.09006 5.20192 5.27737 5.28160 5.43019 5.51453 5.56565 5.65597 5.70657 5.73937 5.84060 5.86273 5.91539 6.03199 6.07025 6.17841 6.23791 6.42286 6.43185 6.57339 6.70714 6.79298 7.24696 7.56356 7.58920 7.61518 7.71925 8.17031 8.30437 9.11278 9.71984 10.22531 11.20357 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003504 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.083309 B = 7989.137577 C = 9928.178830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.583 5.583 3 C -0.267 4.267 4 H 0.069 0.931 5 C 0.010 3.990 6 N -0.901 5.901 7 Si 0.906 3.094 8 H -0.285 1.285 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.172 3.828 12 H 0.083 0.917 13 C -0.154 4.154 14 C 0.111 3.889 15 N -0.602 5.602 16 C 0.572 3.428 17 O -0.546 6.546 18 C -0.096 4.096 19 C -0.155 4.155 20 C 0.127 3.873 21 F -0.114 7.114 22 C 0.110 3.890 23 N -0.465 5.465 24 C 0.136 3.864 25 C -0.174 4.174 26 C -0.048 4.048 27 C -0.092 4.092 28 C -0.044 4.044 29 C 0.059 3.941 30 H 0.023 0.977 31 H 0.001 0.999 32 H 0.055 0.945 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.190 0.810 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.087 0.913 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -16.654 -7.319 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.303 5.303 3 C -0.397 4.397 4 H 0.087 0.913 5 C -0.189 4.189 6 N -0.544 5.544 7 Si 0.736 3.264 8 H -0.212 1.212 9 H -0.215 1.215 10 H -0.204 1.204 11 C 0.061 3.939 12 H 0.101 0.899 13 C -0.194 4.194 14 C -0.012 4.012 15 N -0.335 5.335 16 C 0.362 3.638 17 O -0.426 6.426 18 C -0.100 4.100 19 C -0.175 4.175 20 C 0.107 3.893 21 F -0.092 7.092 22 C -0.012 4.012 23 N -0.173 5.173 24 C -0.037 4.037 25 C -0.193 4.193 26 C -0.074 4.074 27 C -0.094 4.094 28 C -0.064 4.064 29 C -0.065 4.065 30 H 0.041 0.959 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.206 0.794 39 H 0.181 0.819 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.104 0.896 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.532 -16.143 -7.461 17.849 hybrid contribution 0.174 0.407 -0.016 0.443 sum -1.358 -15.736 -7.477 17.475 Atomic orbital electron populations 1.20814 0.82558 0.97164 0.98209 1.43882 1.01780 0.99821 1.84824 1.19179 1.00993 0.85994 1.33499 0.91303 1.25145 0.97776 0.98970 0.97046 1.70029 1.20019 1.28362 1.35960 0.86247 0.78490 0.83681 0.78014 1.21229 1.21545 1.20414 1.21445 0.96782 0.85961 0.89711 0.89930 1.23364 1.02980 0.93105 0.99971 1.22250 1.00340 0.98725 0.79859 1.48405 1.66423 1.07629 1.11007 1.17709 0.77612 0.83778 0.84733 1.90750 1.55053 1.22230 1.74578 1.19646 1.02521 0.93255 0.94537 1.22754 1.00100 0.99997 0.94627 1.16980 1.01059 0.79787 0.91466 1.91588 1.93244 1.38041 1.86348 1.18982 0.98894 0.91877 0.91454 1.68064 1.10176 1.34597 1.04459 1.23069 0.92643 0.88408 0.99575 1.21950 1.02025 0.98671 0.96683 1.21522 0.93763 0.98595 0.93539 1.18547 1.01864 0.93724 0.95243 1.21400 0.94251 0.99400 0.91374 1.23549 1.02154 0.79893 1.00909 0.95915 0.98111 0.92671 0.93436 0.90124 0.90316 0.90852 0.91434 0.79393 0.81943 0.84033 0.83616 0.83250 0.89559 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.59 7.94 59.85 0.48 4.06 16 2 N -0.58 -13.30 2.92 -171.38 -0.50 -13.80 16 3 C -0.27 -6.82 9.56 -15.06 -0.14 -6.96 16 4 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 5 C 0.01 0.27 5.10 -17.43 -0.09 0.19 16 6 N -0.90 -25.02 10.84 55.49 0.60 -24.42 16 7 Si 0.91 20.93 29.57 -169.99 -5.03 15.91 16 8 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 C 0.17 3.13 3.45 -66.09 -0.23 2.90 16 12 H 0.08 1.48 7.95 -51.93 -0.41 1.07 16 13 C -0.15 -2.36 6.62 -24.59 -0.16 -2.53 16 14 C 0.11 1.58 6.89 -2.53 -0.02 1.56 16 15 N -0.60 -9.53 3.33 -177.76 -0.59 -10.12 16 16 C 0.57 9.33 7.80 -12.36 -0.10 9.23 16 17 O -0.55 -9.85 16.63 5.31 0.09 -9.77 16 18 C -0.10 -1.43 5.87 -104.99 -0.62 -2.05 16 19 C -0.16 -2.42 8.45 -39.52 -0.33 -2.76 16 20 C 0.13 2.08 7.29 -39.38 -0.29 1.79 16 21 F -0.11 -2.08 17.10 2.25 0.04 -2.04 16 22 C 0.11 1.63 6.61 -84.72 -0.56 1.07 16 23 N -0.47 -6.55 10.19 -10.88 -0.11 -6.66 16 24 C 0.14 1.31 11.15 -17.46 -0.19 1.12 16 25 C -0.17 -1.32 10.03 -39.78 -0.40 -1.72 16 26 C -0.05 -0.42 9.89 -39.18 -0.39 -0.81 16 27 C -0.09 -1.13 5.74 -106.82 -0.61 -1.74 16 28 C -0.04 -0.56 9.34 -38.74 -0.36 -0.93 16 29 C 0.06 1.00 4.50 -3.06 -0.01 0.99 16 30 H 0.02 0.56 7.34 -51.93 -0.38 0.18 16 31 H 0.00 0.01 6.07 -51.93 -0.32 -0.30 16 32 H 0.05 1.38 7.03 -51.93 -0.37 1.02 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.29 6.08 -51.93 -0.32 0.97 16 36 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.19 3.08 2.69 -60.36 -0.16 2.92 16 39 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.15 1.66 7.64 -52.49 -0.40 1.26 16 43 H 0.09 1.61 5.41 -51.93 -0.28 1.33 16 44 H 0.07 1.19 6.77 -51.93 -0.35 0.84 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -31.28 359.80 -9.17 -40.45 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.07 Total: 1.60 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -4.03 Total: 3.42 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.60 Total: -54.99 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.28 -9.17 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972554556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.278 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds