Wall clock time and date at job start Wed Apr 1 2020 02:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 119.99814 * 2 1 4 4 H 1.08006 * 119.99358 * 153.25293 * 3 2 1 5 5 C 1.38807 * 120.00275 * 332.97591 * 3 2 1 6 6 N 1.31617 * 120.00035 * 350.01970 * 5 3 2 7 7 Si 1.86796 * 120.00073 * 170.01675 * 5 3 2 8 8 H 1.48505 * 109.47148 * 90.00083 * 7 5 3 9 9 H 1.48496 * 109.47230 * 210.00048 * 7 5 3 10 10 H 1.48497 * 109.47246 * 330.00627 * 7 5 3 11 11 C 1.46500 * 119.99842 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.64056 * 181.68260 * 11 2 1 13 13 C 1.55157 * 110.72397 * 305.02310 * 11 2 1 14 14 C 1.54904 * 101.58474 * 153.86410 * 13 11 2 15 15 N 1.47425 * 104.83288 * 322.99147 * 14 13 11 16 16 C 1.34776 * 125.65243 * 204.16359 * 15 14 13 17 17 O 1.21568 * 119.99319 * 354.68078 * 16 15 14 18 18 C 1.47770 * 120.00543 * 174.67839 * 16 15 14 19 19 C 1.40613 * 119.78744 * 8.31536 * 18 16 15 20 20 C 1.35914 * 120.88713 * 179.97438 * 19 18 16 21 21 F 1.35101 * 119.96468 * 180.02562 * 20 19 18 22 22 C 1.40960 * 120.06530 * 359.97438 * 20 19 18 23 23 N 1.33629 * 120.82778 * 180.02562 * 22 20 19 24 24 C 1.31108 * 121.39377 * 179.97438 * 23 22 20 25 25 C 1.39325 * 121.76190 * 0.04606 * 24 23 22 26 26 C 1.36573 * 119.90282 * 359.97438 * 25 24 23 27 27 C 1.40892 * 118.15799 * 359.97438 * 26 25 24 28 28 C 1.38539 * 119.79183 * 188.03544 * 18 16 15 29 29 C 1.47029 * 108.70385 * 24.12856 * 15 14 13 30 30 H 1.08994 * 109.47208 * 92.43309 * 1 2 3 31 31 H 1.09000 * 109.46746 * 212.43927 * 1 2 3 32 32 H 1.09001 * 109.46778 * 332.42736 * 1 2 3 33 33 H 0.97003 * 120.00371 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.00236 * 271.94201 * 13 11 2 35 35 H 1.08999 * 111.00125 * 35.78937 * 13 11 2 36 36 H 1.08992 * 110.36874 * 204.15237 * 14 13 11 37 37 H 1.09005 * 110.36785 * 81.82936 * 14 13 11 38 38 H 1.07997 * 119.55237 * 359.97225 * 19 18 16 39 39 H 1.08000 * 119.11930 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.04910 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.91958 * 180.02562 * 26 25 24 42 42 H 1.07992 * 120.27214 * 0.02562 * 28 18 16 43 43 H 1.09000 * 109.87978 * 239.52304 * 29 15 14 44 44 H 1.09001 * 110.01122 * 118.43091 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1431 1.2359 0.4210 5 6 1.5693 2.3224 -0.5462 6 7 0.4528 2.2244 -1.2362 7 14 2.3729 3.9909 -0.3019 8 1 3.3272 4.2478 -1.4104 9 1 1.3287 5.0467 -0.2930 10 1 3.1019 4.0046 0.9918 11 6 2.1975 -1.2688 -0.0006 12 1 3.2726 -1.0918 0.0295 13 6 1.7508 -2.1612 1.1874 14 6 2.0638 -3.5786 0.6466 15 7 1.7323 -3.5167 -0.7885 16 6 1.4042 -4.5682 -1.5651 17 8 1.4573 -5.6962 -1.1148 18 6 0.9798 -4.3502 -2.9636 19 6 1.0862 -3.0695 -3.5343 20 6 0.7030 -2.8439 -4.8186 21 9 0.8139 -1.6060 -5.3483 22 6 0.1910 -3.9004 -5.5987 23 7 -0.1898 -3.6958 -6.8632 24 6 -0.6670 -4.6704 -7.5989 25 6 -0.8025 -5.9653 -7.1027 26 6 -0.4326 -6.2442 -5.8179 27 6 0.0807 -5.1943 -5.0310 28 6 0.4850 -5.4100 -3.7060 29 6 1.8182 -2.1176 -1.2323 30 1 -0.3633 -0.0436 -1.0267 31 1 -0.3633 -0.8673 0.5513 32 1 -0.3633 0.9110 0.4757 33 1 0.0474 3.0186 -1.6182 34 1 2.3374 -1.9453 2.0804 35 1 0.6851 -2.0447 1.3844 36 1 1.4431 -4.3214 1.1476 37 1 3.1199 -3.8118 0.7823 38 1 1.4777 -2.2542 -2.9441 39 1 -0.9634 -4.4640 -8.6167 40 1 -1.1994 -6.7472 -7.7331 41 1 -0.5301 -7.2421 -5.4166 42 1 0.4082 -6.3935 -3.2666 43 1 0.8540 -1.7930 -1.6236 44 1 2.5834 -2.0167 -2.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972554556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:46 Heat of formation + Delta-G solvation = 18.250230 kcal Electronic energy + Delta-G solvation = -29882.474999 eV Core-core repulsion = 25715.582260 eV Total energy + Delta-G solvation = -4166.892739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.03405 -42.10716 -41.15869 -39.08113 -37.82086 -36.54903 -34.44479 -33.54065 -32.58100 -31.07627 -30.86931 -29.54002 -28.04493 -26.42490 -25.58311 -24.79477 -23.78476 -23.14296 -21.20359 -21.13108 -19.89714 -18.96072 -18.89148 -18.21991 -17.52031 -17.42204 -16.97603 -16.75540 -16.55183 -16.38633 -15.93487 -15.69738 -15.62708 -15.10471 -14.98005 -14.81750 -14.51237 -14.25117 -14.10241 -13.91707 -13.69611 -13.57875 -13.29810 -13.08515 -12.84696 -12.72915 -12.69296 -12.42278 -12.37915 -12.17467 -11.90310 -11.73300 -11.56419 -11.46578 -11.14691 -10.66229 -10.60283 -10.08989 -9.81216 -9.30928 -8.75011 -7.85234 -5.36587 -0.98442 -0.59282 0.69888 1.14425 1.48645 1.49878 1.58520 1.80611 2.10717 2.50843 2.78081 2.85375 3.11327 3.13604 3.30849 3.50299 3.57934 3.66084 3.74841 3.84184 3.87623 3.93485 4.15541 4.24565 4.29870 4.33557 4.41401 4.43671 4.57065 4.61252 4.74994 4.79138 4.81418 4.86315 4.90068 4.98380 5.07982 5.13573 5.20074 5.29812 5.34992 5.42521 5.61726 5.64840 5.69627 6.30571 6.34887 6.73447 6.90864 7.14038 7.82935 8.29311 9.18822 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003504 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.083309 B = 7989.137577 C = 9928.178830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.597 5.597 3 C -0.267 4.267 4 H 0.077 0.923 5 C -0.045 4.045 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.297 1.297 10 H -0.267 1.267 11 C 0.163 3.837 12 H 0.088 0.912 13 C -0.139 4.139 14 C 0.113 3.887 15 N -0.604 5.604 16 C 0.576 3.424 17 O -0.564 6.564 18 C -0.125 4.125 19 C -0.154 4.154 20 C 0.091 3.909 21 F -0.139 7.139 22 C 0.097 3.903 23 N -0.517 5.517 24 C 0.142 3.858 25 C -0.157 4.157 26 C -0.041 4.041 27 C -0.104 4.104 28 C -0.018 4.018 29 C 0.077 3.923 30 H -0.006 1.006 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.173 0.827 39 H 0.196 0.804 40 H 0.191 0.809 41 H 0.187 0.813 42 H 0.173 0.827 43 H 0.064 0.936 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -20.118 -7.871 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.318 5.318 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.241 4.241 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.224 1.224 10 H -0.191 1.191 11 C 0.054 3.946 12 H 0.106 0.894 13 C -0.179 4.179 14 C -0.008 4.008 15 N -0.336 5.336 16 C 0.366 3.634 17 O -0.445 6.445 18 C -0.128 4.128 19 C -0.174 4.174 20 C 0.071 3.929 21 F -0.117 7.117 22 C -0.025 4.025 23 N -0.226 5.226 24 C -0.029 4.029 25 C -0.176 4.176 26 C -0.067 4.067 27 C -0.106 4.106 28 C -0.038 4.038 29 C -0.048 4.048 30 H 0.013 0.987 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.189 0.811 39 H 0.213 0.787 40 H 0.208 0.792 41 H 0.204 0.796 42 H 0.190 0.810 43 H 0.082 0.918 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.474 -19.643 -7.990 21.257 hybrid contribution 0.105 1.283 -0.012 1.287 sum -1.369 -18.360 -8.002 20.075 Atomic orbital electron populations 1.20490 0.83071 0.96818 0.96548 1.44010 1.01747 1.00872 1.85185 1.19549 1.01058 0.87058 1.32047 0.90563 1.25862 0.98547 1.02166 0.97563 1.70201 1.21618 1.28472 1.37680 0.85292 0.77293 0.79778 0.78162 1.21378 1.22394 1.19116 1.21643 0.96661 0.84766 0.91541 0.89408 1.23223 1.02539 0.92835 0.99281 1.22352 1.01680 0.98022 0.78789 1.48408 1.66507 1.06921 1.11734 1.17839 0.77022 0.83423 0.85095 1.90728 1.56122 1.22569 1.75103 1.19562 1.05298 0.93591 0.94348 1.22517 1.00390 1.00104 0.94401 1.17315 1.03508 0.79751 0.92376 1.91505 1.93802 1.39666 1.86732 1.19051 0.99133 0.92268 0.92051 1.68067 1.12804 1.36988 1.04727 1.23865 0.89895 0.88752 1.00432 1.22470 0.99880 0.98648 0.96621 1.22040 0.91972 0.99112 0.93547 1.18801 1.02513 0.93856 0.95459 1.21696 0.91394 0.99427 0.91237 1.23169 1.01029 0.80543 1.00041 0.98737 0.95327 0.95505 0.94304 0.88176 0.91302 0.89975 0.89541 0.81064 0.78696 0.79156 0.79590 0.81010 0.91770 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.36 7.94 127.77 1.01 9.38 16 2 N -0.60 -27.84 2.92 -696.14 -2.03 -29.88 16 3 C -0.27 -13.84 9.56 84.03 0.80 -13.03 16 4 H 0.08 3.77 7.85 -2.91 -0.02 3.75 16 5 C -0.05 -2.47 5.10 84.86 0.43 -2.03 16 6 N -0.93 -54.36 10.84 21.65 0.23 -54.13 16 7 Si 0.97 44.03 29.57 68.60 2.03 46.06 16 8 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 9 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 C 0.16 5.93 3.45 46.18 0.16 6.09 16 12 H 0.09 3.10 7.95 -2.39 -0.02 3.08 16 13 C -0.14 -4.07 6.62 31.98 0.21 -3.86 16 14 C 0.11 3.03 6.89 86.85 0.60 3.63 16 15 N -0.60 -18.93 3.33 -834.58 -2.78 -21.71 16 16 C 0.58 18.52 7.80 86.76 0.68 19.20 16 17 O -0.56 -19.55 16.63 -3.93 -0.07 -19.61 16 18 C -0.12 -3.75 5.87 -20.11 -0.12 -3.87 16 19 C -0.15 -5.17 8.45 22.31 0.19 -4.98 16 20 C 0.09 3.18 7.29 22.40 0.16 3.35 16 21 F -0.14 -5.58 17.10 44.97 0.77 -4.81 16 22 C 0.10 2.91 6.61 40.40 0.27 3.17 16 23 N -0.52 -14.40 10.19 -188.33 -1.92 -16.32 16 24 C 0.14 2.33 11.15 85.06 0.95 3.28 16 25 C -0.16 -1.60 10.03 22.14 0.22 -1.37 16 26 C -0.04 -0.54 9.89 22.53 0.22 -0.32 16 27 C -0.10 -2.37 5.74 -21.29 -0.12 -2.50 16 28 C -0.02 -0.43 9.34 22.82 0.21 -0.22 16 29 C 0.08 2.68 4.50 86.73 0.39 3.07 16 30 H -0.01 -0.30 7.34 -2.39 -0.02 -0.32 16 31 H 0.03 1.17 6.07 -2.39 -0.01 1.16 16 32 H 0.03 1.39 7.03 -2.39 -0.02 1.37 16 33 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.10 2.56 8.14 -2.39 -0.02 2.55 16 35 H 0.07 2.17 6.08 -2.39 -0.01 2.16 16 36 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 37 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.17 6.17 2.69 -10.31 -0.03 6.14 16 39 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.19 0.16 8.06 -2.91 -0.02 0.13 16 41 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 42 H 0.17 3.29 7.64 -2.91 -0.02 3.27 16 43 H 0.06 2.56 5.41 -2.39 -0.01 2.55 16 44 H 0.07 2.56 6.77 -2.39 -0.02 2.54 16 Total: -1.00 -72.61 359.80 3.55 -69.06 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.04 Total: 12.34 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.27 Total: 18.98 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -6.49 Total: -122.02 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.07 Total: -19.61 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.77 Total: -4.81 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.61 3.55 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972554556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.310 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds