Wall clock time and date at job start Wed Apr 1 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36941 * 119.99901 * 2 1 4 4 H 1.07998 * 119.99544 * 213.77054 * 3 2 1 5 5 C 1.38807 * 119.99957 * 33.77722 * 3 2 1 6 6 N 1.31621 * 120.00074 * 5.44524 * 5 3 2 7 7 Si 1.86802 * 119.99920 * 185.44589 * 5 3 2 8 8 H 1.48499 * 109.46926 * 359.97438 * 7 5 3 9 9 H 1.48507 * 109.47300 * 119.99684 * 7 5 3 10 10 H 1.48500 * 109.47001 * 239.99869 * 7 5 3 11 11 C 1.46497 * 119.99851 * 179.72605 * 2 1 3 12 12 H 1.09003 * 110.64216 * 179.29762 * 11 2 1 13 13 C 1.55153 * 110.72137 * 302.43912 * 11 2 1 14 14 C 1.55126 * 101.48448 * 153.73726 * 13 11 2 15 15 N 1.47428 * 104.93986 * 323.22126 * 14 13 11 16 16 C 1.34782 * 125.64563 * 204.04285 * 15 14 13 17 17 O 1.21564 * 120.00022 * 5.85489 * 16 15 14 18 18 C 1.47759 * 119.99645 * 185.85887 * 16 15 14 19 19 C 1.40597 * 120.27406 * 352.66416 * 18 16 15 20 20 N 1.30791 * 121.54621 * 180.02562 * 19 18 16 21 21 C 1.33824 * 121.72486 * 359.97009 * 20 19 18 22 22 C 1.40546 * 120.79773 * 180.02562 * 21 20 19 23 23 C 1.36090 * 119.85044 * 179.97438 * 22 21 20 24 24 C 1.39557 * 121.06572 * 359.97438 * 23 22 21 25 25 F 1.35096 * 119.61080 * 180.02562 * 24 23 22 26 26 C 1.36347 * 120.77655 * 0.02562 * 24 23 22 27 27 C 1.40512 * 119.60354 * 359.97438 * 26 24 23 28 28 C 1.39005 * 120.26649 * 172.39369 * 18 16 15 29 29 C 1.47016 * 108.70370 * 24.00717 * 15 14 13 30 30 H 1.09007 * 109.47171 * 265.38672 * 1 2 3 31 31 H 1.09005 * 109.47108 * 25.38129 * 1 2 3 32 32 H 1.08993 * 109.47448 * 145.38699 * 1 2 3 33 33 H 0.97007 * 119.99869 * 180.02562 * 6 5 3 34 34 H 1.09007 * 111.00477 * 271.93528 * 13 11 2 35 35 H 1.08996 * 111.00734 * 35.79208 * 13 11 2 36 36 H 1.09009 * 110.41802 * 204.29611 * 14 13 11 37 37 H 1.08995 * 110.30699 * 82.09184 * 14 13 11 38 38 H 1.08009 * 119.22417 * 359.97438 * 19 18 16 39 39 H 1.08008 * 120.07034 * 0.02562 * 22 21 20 40 40 H 1.08004 * 119.46549 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.20064 * 180.02562 * 26 24 23 42 42 H 1.08004 * 121.02003 * 359.97196 * 28 18 16 43 43 H 1.09003 * 109.87905 * 239.52359 * 29 15 14 44 44 H 1.08995 * 109.88174 * 118.36079 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0929 1.2648 -0.5199 5 6 1.6313 2.2866 0.6683 6 7 0.5379 2.1631 1.3905 7 14 2.4856 3.9431 0.5427 8 1 3.6856 3.8167 -0.3228 9 1 1.5529 4.9378 -0.0456 10 1 2.8976 4.3914 1.8971 11 6 2.1974 -1.2687 0.0061 12 1 3.2729 -1.0916 -0.0073 13 6 1.7977 -2.1275 1.2349 14 6 2.0881 -3.5608 0.7176 15 7 1.7050 -3.5361 -0.7058 16 6 1.3495 -4.6074 -1.4422 17 8 1.2232 -5.6943 -0.9126 18 6 1.1132 -4.4608 -2.8934 19 6 1.1061 -3.1854 -3.4851 20 7 0.8991 -3.0268 -4.7668 21 6 0.6844 -4.0684 -5.5791 22 6 0.4646 -3.8755 -6.9538 23 6 0.2488 -4.9487 -7.7624 24 6 0.2419 -6.2467 -7.2499 25 9 0.0252 -7.2908 -8.0794 26 6 0.4514 -6.4735 -5.9218 27 6 0.6773 -5.3875 -5.0593 28 6 0.9017 -5.5832 -3.6858 29 6 1.7743 -2.1492 -1.1886 30 1 -0.3634 -0.0827 1.0244 31 1 -0.3633 0.9285 -0.4405 32 1 -0.3634 -0.8457 -0.5837 33 1 0.1754 2.9324 1.8573 34 1 2.4187 -1.8873 2.0980 35 1 0.7405 -2.0049 1.4700 36 1 1.4861 -4.2901 1.2599 37 1 3.1480 -3.7929 0.8213 38 1 1.2748 -2.3162 -2.8666 39 1 0.4678 -2.8779 -7.3676 40 1 0.0810 -4.7933 -8.8179 41 1 0.4445 -7.4819 -5.5352 42 1 0.9067 -6.5751 -3.2585 43 1 0.7965 -1.8344 -1.5531 44 1 2.5125 -2.0710 -1.9867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972671793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:41 Heat of formation + Delta-G solvation = 31.441743 kcal Electronic energy + Delta-G solvation = -29184.526318 eV Core-core repulsion = 25018.205607 eV Total energy + Delta-G solvation = -4166.320712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.29361 -41.28662 -39.82721 -37.64125 -36.98407 -34.84243 -33.77142 -32.02396 -31.24812 -30.20455 -29.62569 -28.14782 -26.12733 -25.34126 -24.46948 -23.37618 -22.68239 -22.24334 -20.08544 -19.67032 -18.98985 -18.02197 -17.22777 -17.12917 -16.96399 -16.09062 -15.99273 -15.46964 -15.24825 -15.05349 -14.82494 -14.42244 -14.19779 -13.99840 -13.75648 -13.51349 -13.46911 -13.28173 -13.10921 -12.90428 -12.61117 -12.26546 -11.89903 -11.71324 -11.62987 -11.24961 -11.00361 -10.88481 -10.86876 -10.66204 -10.55501 -10.37652 -10.25630 -10.05482 -9.82260 -9.58965 -9.10992 -8.66162 -8.63809 -8.46359 -6.77479 -5.89038 -3.45221 -0.15862 0.23634 1.47324 2.19134 2.94518 3.02002 3.30251 3.38545 3.39770 3.76933 3.78281 3.94920 4.14590 4.25781 4.38171 4.47091 4.53719 4.57917 4.70134 5.01098 5.09676 5.15927 5.22812 5.28762 5.39675 5.43518 5.47817 5.50861 5.65878 5.68493 5.72485 5.72938 5.84373 5.87265 6.04123 6.13999 6.26595 6.36983 6.41194 6.55371 6.69212 6.80228 7.19556 7.52952 7.58203 7.60827 7.71038 8.10084 8.33022 9.09746 9.68168 10.22461 11.16973 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.002619 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.019262 B =10690.310384 C =12106.686926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.582 5.582 3 C -0.269 4.269 4 H 0.068 0.932 5 C 0.015 3.985 6 N -0.899 5.899 7 Si 0.905 3.095 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.172 3.828 12 H 0.084 0.916 13 C -0.150 4.150 14 C 0.107 3.893 15 N -0.602 5.602 16 C 0.576 3.424 17 O -0.545 6.545 18 C -0.176 4.176 19 C 0.125 3.875 20 N -0.466 5.466 21 C 0.129 3.871 22 C -0.062 4.062 23 C -0.128 4.128 24 C 0.097 3.903 25 F -0.137 7.137 26 C -0.124 4.124 27 C -0.093 4.093 28 C 0.005 3.995 29 C 0.058 3.942 30 H 0.024 0.976 31 H 0.052 0.948 32 H -0.003 1.003 33 H 0.255 0.745 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.205 0.795 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.087 0.913 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -14.533 -13.253 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.303 5.303 3 C -0.398 4.398 4 H 0.085 0.915 5 C -0.185 4.185 6 N -0.541 5.541 7 Si 0.734 3.266 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.215 1.215 11 C 0.061 3.939 12 H 0.102 0.898 13 C -0.190 4.190 14 C -0.015 4.015 15 N -0.335 5.335 16 C 0.364 3.636 17 O -0.424 6.424 18 C -0.181 4.181 19 C -0.047 4.047 20 N -0.173 5.173 21 C 0.008 3.992 22 C -0.080 4.080 23 C -0.148 4.148 24 C 0.078 3.922 25 F -0.116 7.116 26 C -0.144 4.144 27 C -0.095 4.095 28 C -0.021 4.021 29 C -0.067 4.067 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.220 0.780 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.105 0.895 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.284 -14.207 -13.415 19.542 hybrid contribution 0.246 -0.104 0.242 0.361 sum 0.531 -14.311 -13.173 19.458 Atomic orbital electron populations 1.20793 0.82873 0.97109 0.98001 1.43790 1.01560 0.99799 1.85138 1.19171 1.05597 0.87588 1.27454 0.91457 1.25310 0.97676 0.99341 0.96218 1.70013 1.21928 1.29648 1.32534 0.86193 0.79141 0.83805 0.77424 1.20063 1.21500 1.21525 1.21390 0.96811 0.86126 0.89532 0.89817 1.23411 1.03098 0.92272 1.00228 1.22356 0.99823 0.99251 0.80105 1.48328 1.65575 1.07257 1.12299 1.17564 0.77311 0.83348 0.85355 1.90761 1.52983 1.25897 1.72741 1.21004 1.06624 0.95429 0.95023 1.25202 0.89925 0.98114 0.91426 1.68175 1.12123 1.32157 1.04870 1.19179 0.97106 0.88409 0.94540 1.20767 0.96808 0.99880 0.90574 1.20965 1.01602 0.90600 1.01683 1.17339 1.02639 0.84266 0.87928 1.91525 1.92226 1.56306 1.71499 1.20954 1.01895 0.99804 0.91766 1.18499 1.03050 0.93906 0.94068 1.21881 0.89614 0.99680 0.90970 1.23367 1.01918 0.80904 1.00477 0.95758 0.92880 0.98470 0.93502 0.90037 0.90506 0.90746 0.91441 0.77989 0.83213 0.83776 0.83698 0.82788 0.89542 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.49 7.87 59.84 0.47 3.96 16 2 N -0.58 -12.97 2.90 -171.39 -0.50 -13.46 16 3 C -0.27 -6.71 9.49 -15.06 -0.14 -6.86 16 4 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 5 C 0.01 0.38 5.17 -17.43 -0.09 0.29 16 6 N -0.90 -24.58 11.08 55.49 0.61 -23.97 16 7 Si 0.90 20.50 29.56 -169.99 -5.02 15.48 16 8 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.04 3.43 -66.10 -0.23 2.82 16 12 H 0.08 1.46 7.95 -51.93 -0.41 1.05 16 13 C -0.15 -2.43 6.66 -24.47 -0.16 -2.59 16 14 C 0.11 1.53 6.94 -2.41 -0.02 1.52 16 15 N -0.60 -9.01 3.33 -176.18 -0.59 -9.60 16 16 C 0.58 8.92 7.80 -12.37 -0.10 8.82 16 17 O -0.54 -9.67 16.64 5.31 0.09 -9.58 16 18 C -0.18 -2.41 5.88 -104.83 -0.62 -3.02 16 19 C 0.13 1.71 9.77 -17.11 -0.17 1.54 16 20 N -0.47 -6.43 10.30 -10.66 -0.11 -6.54 16 21 C 0.13 1.58 6.61 -84.77 -0.56 1.02 16 22 C -0.06 -0.59 9.97 -39.48 -0.39 -0.98 16 23 C -0.13 -1.04 9.92 -39.86 -0.40 -1.44 16 24 C 0.10 0.89 7.24 -39.77 -0.29 0.61 16 25 F -0.14 -1.30 17.25 2.25 0.04 -1.26 16 26 C -0.12 -1.17 9.73 -39.41 -0.38 -1.55 16 27 C -0.09 -1.06 5.74 -106.81 -0.61 -1.67 16 28 C 0.01 0.06 9.46 -38.43 -0.36 -0.30 16 29 C 0.06 0.86 4.45 -3.07 -0.01 0.85 16 30 H 0.02 0.59 7.47 -51.92 -0.39 0.20 16 31 H 0.05 1.30 7.24 -51.93 -0.38 0.92 16 32 H 0.00 -0.06 6.22 -51.93 -0.32 -0.38 16 33 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.37 7.07 -51.93 -0.37 1.01 16 36 H 0.07 1.08 7.98 -51.92 -0.41 0.66 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.20 2.75 2.70 -58.51 -0.16 2.59 16 39 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.15 1.64 7.72 -52.48 -0.41 1.23 16 43 H 0.09 1.36 4.66 -51.93 -0.24 1.12 16 44 H 0.08 1.02 6.74 -51.93 -0.35 0.67 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -29.56 360.88 -9.19 -38.75 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.10 Total: 1.72 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -4.06 Total: 3.02 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.58 Total: -53.56 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.56 -9.19 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972671793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.190 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds