Wall clock time and date at job start Wed Apr 1 2020 01:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30018 * 127.33438 * 2 1 4 4 O 1.20660 * 112.29825 * 180.29176 * 3 2 1 5 5 C 1.33489 * 113.15808 * 359.73949 * 4 3 2 6 6 C 1.50701 * 126.82760 * 180.02562 * 5 4 3 7 7 F 1.39896 * 109.47622 * 29.96681 * 6 5 4 8 8 F 1.39900 * 109.47321 * 149.97200 * 6 5 4 9 9 C 1.37353 * 106.34492 * 359.97438 * 5 4 3 10 10 C 1.47397 * 128.56856 * 179.97438 * 9 5 4 11 11 O 1.21608 * 119.99605 * 90.00538 * 10 9 5 12 12 N 1.34772 * 120.00044 * 269.73190 * 10 9 5 13 13 C 1.46924 * 120.63512 * 359.97438 * 12 10 9 14 14 C 1.53620 * 108.54309 * 126.36932 * 13 12 10 15 15 C 1.53037 * 109.24182 * 54.86001 * 14 13 12 16 16 N 1.46507 * 109.46289 * 178.49028 * 15 14 13 17 17 C 1.46496 * 119.99568 * 60.06760 * 16 15 14 18 18 C 1.36928 * 120.00095 * 240.07139 * 16 15 14 19 19 H 1.08000 * 120.00185 * 22.98693 * 18 16 15 20 20 C 1.38815 * 120.00016 * 202.98870 * 18 16 15 21 21 N 1.31618 * 119.99895 * 11.64820 * 20 18 16 22 22 Si 1.86800 * 120.00023 * 191.64503 * 20 18 16 23 23 H 1.48503 * 109.47332 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47260 * 119.99739 * 22 20 18 25 25 H 1.48503 * 109.47226 * 240.00157 * 22 20 18 26 26 C 1.53041 * 109.53944 * 298.51154 * 15 14 13 27 27 C 1.46935 * 120.62965 * 180.27587 * 12 10 9 28 28 H 1.08997 * 109.46978 * 270.12575 * 1 2 3 29 29 H 1.09000 * 109.47119 * 30.11777 * 1 2 3 30 30 H 1.08996 * 109.47102 * 150.12223 * 1 2 3 31 31 H 1.09003 * 109.47071 * 269.96984 * 6 5 4 32 32 H 1.08990 * 109.59118 * 246.20634 * 13 12 10 33 33 H 1.09004 * 109.58430 * 6.62932 * 13 12 10 34 34 H 1.09008 * 109.63532 * 294.87118 * 14 13 12 35 35 H 1.08997 * 109.43455 * 174.73094 * 14 13 12 36 36 H 1.09003 * 109.46008 * 58.53401 * 15 14 13 37 37 H 1.08999 * 109.47413 * 93.85048 * 17 16 15 38 38 H 1.09006 * 109.46994 * 213.84258 * 17 16 15 39 39 H 1.08994 * 109.47719 * 333.84388 * 17 16 15 40 40 H 0.96999 * 119.99904 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.49915 * 301.41301 * 26 15 14 42 42 H 1.09005 * 109.52426 * 181.33277 * 26 15 14 43 43 H 1.09000 * 109.58566 * 353.36852 * 27 12 10 44 44 H 1.08999 * 109.58799 * 113.65339 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0057 5 6 3.6494 -0.6007 -0.0049 6 6 4.9712 -1.3245 -0.0104 7 9 5.9322 -0.5456 0.6429 8 9 4.8349 -2.5493 0.6518 9 6 2.3992 -1.1696 0.0029 10 6 2.0401 -2.5992 0.0064 11 8 1.8981 -3.1878 1.0610 12 7 1.8638 -3.2525 -1.1591 13 6 2.0255 -2.5534 -2.4412 14 6 3.0291 -3.3362 -3.3014 15 6 2.5581 -4.7864 -3.4318 16 7 3.4930 -5.5288 -4.2812 17 6 4.9000 -5.6484 -3.8912 18 6 3.0516 -6.1106 -5.4394 19 1 2.1597 -5.7411 -5.9236 20 6 3.7505 -7.1755 -5.9914 21 7 4.6943 -7.7742 -5.2963 22 14 3.3513 -7.7588 -7.7205 23 1 2.2585 -6.9260 -8.2840 24 1 4.5592 -7.6357 -8.5756 25 1 2.9185 -9.1786 -7.6764 26 6 2.5042 -5.4337 -2.0461 27 6 1.4998 -4.6760 -1.1717 28 1 -0.3633 0.0023 1.0276 29 1 -0.3633 0.8889 -0.5157 30 1 -0.3633 -0.8910 -0.5119 31 1 5.2847 -1.5008 -1.0394 32 1 1.0645 -2.5011 -2.9527 33 1 2.4023 -1.5462 -2.2632 34 1 4.0116 -3.3138 -2.8296 35 1 3.0897 -2.8830 -4.2908 36 1 1.5652 -4.8068 -3.8810 37 1 5.0459 -6.5755 -3.3369 38 1 5.5251 -5.6570 -4.7843 39 1 5.1762 -4.8019 -3.2626 40 1 5.1829 -8.5180 -5.6821 41 1 3.4915 -5.3915 -1.5862 42 1 2.1915 -6.4736 -2.1416 43 1 1.5296 -5.0698 -0.1558 44 1 0.4958 -4.7928 -1.5796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985494640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:53 Heat of formation + Delta-G solvation = -59.276781 kcal Electronic energy + Delta-G solvation = -31751.608116 eV Core-core repulsion = 27150.584329 eV Total energy + Delta-G solvation = -4601.023787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.32971 -48.36371 -46.21679 -41.28064 -39.00606 -36.73902 -35.89001 -34.36538 -33.80379 -32.07676 -31.47478 -29.89695 -28.30387 -27.99084 -26.77835 -25.40536 -24.15789 -23.55036 -22.02786 -21.42986 -20.22857 -19.50194 -19.11851 -18.73235 -18.41766 -18.38744 -18.18350 -17.46003 -16.91757 -16.67116 -15.98873 -15.69687 -15.25364 -15.16644 -15.12044 -14.86938 -14.71467 -14.60982 -14.56481 -14.37749 -14.16879 -13.97220 -13.83231 -13.74604 -13.21667 -13.10828 -12.79158 -12.75935 -12.65733 -12.55317 -12.34608 -12.20251 -12.00518 -11.80960 -11.63633 -11.49471 -11.20042 -11.12710 -10.92435 -10.59215 -9.82070 -8.72637 -7.78039 -5.25901 -0.27206 0.61196 1.04879 1.16395 1.48480 1.50837 1.59763 1.79934 2.45573 2.53729 2.80011 2.84619 3.16693 3.36215 3.38675 3.51949 3.63408 3.71636 3.84702 3.87454 4.09150 4.14491 4.27764 4.34662 4.38370 4.53901 4.55425 4.65676 4.67561 4.77481 4.82736 4.94434 4.98150 5.03289 5.11218 5.26487 5.35127 5.50101 5.58923 5.70592 5.78076 6.16777 6.38212 6.82366 6.84439 7.20478 7.93605 8.37289 9.25179 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.003197 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.282794 B = 8754.877605 C = 9284.143818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.062 3.938 3 N -0.351 5.351 4 O 0.122 5.878 5 C -0.068 4.068 6 C 0.358 3.642 7 F -0.186 7.186 8 F -0.190 7.190 9 C -0.205 4.205 10 C 0.598 3.402 11 O -0.557 6.557 12 N -0.588 5.588 13 C 0.115 3.885 14 C -0.136 4.136 15 C 0.174 3.826 16 N -0.610 5.610 17 C 0.183 3.817 18 C -0.255 4.255 19 H 0.076 0.924 20 C -0.054 4.054 21 N -0.941 5.941 22 Si 0.963 3.037 23 H -0.263 1.263 24 H -0.296 1.296 25 H -0.297 1.297 26 C -0.133 4.133 27 C 0.125 3.875 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.190 0.810 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.067 0.933 37 H -0.005 1.005 38 H 0.013 0.987 39 H 0.029 0.971 40 H 0.245 0.755 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 17.649 8.530 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 N -0.056 5.056 4 O 0.058 5.942 5 C -0.133 4.133 6 C 0.304 3.696 7 F -0.167 7.167 8 F -0.171 7.171 9 C -0.213 4.213 10 C 0.384 3.616 11 O -0.436 6.436 12 N -0.319 5.319 13 C -0.007 4.007 14 C -0.176 4.176 15 C 0.067 3.933 16 N -0.332 5.332 17 C 0.038 3.962 18 C -0.386 4.386 19 H 0.093 0.907 20 C -0.248 4.248 21 N -0.588 5.588 22 Si 0.792 3.208 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.225 1.225 26 C -0.173 4.173 27 C 0.002 3.998 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.207 0.793 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.013 0.987 38 H 0.032 0.968 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.408 18.508 9.036 21.570 hybrid contribution 0.394 -1.801 -0.600 1.939 sum -6.014 16.707 8.436 19.659 Atomic orbital electron populations 1.20463 0.82327 1.05830 1.05141 1.25291 1.00106 0.84823 0.99743 1.73637 0.89083 1.23391 1.19463 1.84610 1.21678 1.20611 1.67300 1.25323 0.97364 0.85732 1.04906 1.20124 0.79187 0.73954 0.96370 1.93071 1.64362 1.74997 1.84255 1.93129 1.95722 1.44126 1.84102 1.21992 0.92758 0.95640 1.10863 1.16961 0.76904 0.84029 0.83749 1.90822 1.52424 1.68288 1.32078 1.48131 1.66834 1.11213 1.05765 1.22018 1.01129 0.95400 0.82139 1.22396 0.98765 0.96223 1.00220 1.20527 0.93319 0.90367 0.89116 1.44183 1.04718 1.61183 1.23137 1.20403 0.84458 0.95133 0.96227 1.19627 1.10193 1.09279 0.99474 0.90653 1.25742 0.99850 0.97159 1.02098 1.70244 1.27436 1.24141 1.36975 0.85255 0.77405 0.77473 0.80624 1.18716 1.22272 1.22474 1.22312 0.98646 0.99405 0.96978 1.21654 0.98642 0.78411 1.01068 0.88591 0.87684 0.88632 0.79344 0.88360 0.89071 0.92307 0.90066 0.91490 0.98702 0.96787 0.95262 0.94584 0.93680 0.92523 0.90119 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.49 71.24 0.75 -0.26 16 2 C 0.06 1.20 7.59 45.16 0.34 1.54 16 3 N -0.35 -7.43 12.01 -44.77 -0.54 -7.97 16 4 O 0.12 2.54 11.06 77.02 0.85 3.39 16 5 C -0.07 -1.39 7.04 25.48 0.18 -1.21 16 6 C 0.36 6.56 5.81 71.24 0.41 6.97 16 7 F -0.19 -3.67 17.32 44.97 0.78 -2.89 16 8 F -0.19 -4.88 16.11 44.97 0.72 -4.15 16 9 C -0.21 -4.59 4.17 -18.75 -0.08 -4.67 16 10 C 0.60 15.83 6.47 86.66 0.56 16.39 16 11 O -0.56 -19.08 16.52 -4.06 -0.07 -19.15 16 12 N -0.59 -13.88 2.97 -821.94 -2.44 -16.32 16 13 C 0.12 2.21 6.37 86.51 0.55 2.76 16 14 C -0.14 -3.50 5.34 30.82 0.16 -3.33 16 15 C 0.17 5.91 2.55 45.02 0.11 6.03 16 16 N -0.61 -27.80 2.81 -702.63 -1.97 -29.77 16 17 C 0.18 8.55 8.03 127.77 1.03 9.58 16 18 C -0.26 -13.05 9.59 84.04 0.81 -12.25 16 19 H 0.08 3.68 7.82 -2.91 -0.02 3.65 16 20 C -0.05 -2.89 5.12 84.86 0.43 -2.45 16 21 N -0.94 -54.38 10.64 21.65 0.23 -54.15 16 22 Si 0.96 43.45 29.57 68.60 2.03 45.48 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 26 C -0.13 -4.35 5.34 30.68 0.16 -4.19 16 27 C 0.12 3.23 6.43 86.37 0.56 3.79 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.19 1.93 8.14 -2.39 -0.02 1.92 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.45 6.26 -2.39 -0.01 1.44 16 34 H 0.06 1.55 6.72 -2.38 -0.02 1.54 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 37 H -0.01 -0.28 7.42 -2.39 -0.02 -0.30 16 38 H 0.01 0.70 7.22 -2.38 -0.02 0.68 16 39 H 0.03 1.14 6.46 -2.39 -0.02 1.13 16 40 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 41 H 0.04 1.61 7.72 -2.39 -0.02 1.59 16 42 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.53 368.59 6.62 -62.92 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.04 Total: 3.95 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 5.98 Total: 18.68 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -4.72 Total: -108.22 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.78 Total: -15.76 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 1.50 Total: -7.05 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.53 6.62 -62.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985494640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.642 kcal (2) G-P(sol) polarization free energy of solvation -69.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds