Wall clock time and date at job start Wed Apr 1 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 110.00173 * 2 1 4 4 C 1.54328 * 109.88400 * 238.90218 * 2 1 3 5 5 H 1.09005 * 110.72055 * 336.93300 * 4 2 1 6 6 N 1.46501 * 110.72032 * 100.02703 * 4 2 1 7 7 C 1.36933 * 120.00258 * 202.55948 * 6 4 2 8 8 H 1.08000 * 119.99628 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99983 * 180.02562 * 7 6 4 10 10 N 1.31622 * 120.00100 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99960 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.46974 * 269.99886 * 11 9 7 13 13 H 1.48494 * 109.47281 * 29.99764 * 11 9 7 14 14 H 1.48499 * 109.47255 * 150.00157 * 11 9 7 15 15 C 1.55153 * 103.10337 * 218.48518 * 4 2 1 16 16 C 1.54904 * 101.58340 * 35.41051 * 15 4 2 17 17 N 1.47319 * 110.06163 * 121.17449 * 2 1 3 18 18 C 1.34776 * 125.61578 * 298.32147 * 17 2 1 19 19 O 1.21566 * 119.99845 * 353.97430 * 18 17 2 20 20 C 1.47767 * 120.00354 * 173.98311 * 18 17 2 21 21 C 1.40601 * 120.26508 * 335.20773 * 20 18 17 22 22 N 1.30794 * 121.53013 * 179.76103 * 21 20 18 23 23 C 1.33797 * 121.72126 * 0.50037 * 22 21 20 24 24 C 1.40745 * 120.82017 * 179.68053 * 23 22 21 25 25 F 1.35095 * 120.12053 * 0.03379 * 24 23 22 26 26 C 1.36332 * 119.76170 * 180.02562 * 24 23 22 27 27 C 1.39304 * 121.06272 * 0.04483 * 26 24 23 28 28 C 1.36145 * 120.86309 * 0.02562 * 27 26 24 29 29 C 1.40538 * 119.67379 * 359.97374 * 28 27 26 30 30 C 1.38996 * 120.26971 * 155.48530 * 20 18 17 31 31 H 1.09001 * 109.47358 * 181.08998 * 1 2 3 32 32 H 1.08993 * 109.46984 * 301.09813 * 1 2 3 33 33 H 1.08999 * 109.46682 * 61.09501 * 1 2 3 34 34 H 0.96998 * 119.99401 * 22.56385 * 6 4 2 35 35 H 0.97000 * 120.00018 * 179.97438 * 10 9 7 36 36 H 1.09004 * 111.00758 * 153.49158 * 15 4 2 37 37 H 1.09011 * 111.00234 * 277.29733 * 15 4 2 38 38 H 1.08999 * 110.36453 * 81.83349 * 16 15 4 39 39 H 1.09009 * 110.36715 * 204.15160 * 16 15 4 40 40 H 1.08004 * 119.24057 * 0.02562 * 21 20 18 41 41 H 1.08006 * 119.46942 * 180.02562 * 26 24 23 42 42 H 1.08003 * 119.56797 * 179.97438 * 27 26 24 43 43 H 1.08007 * 120.15888 * 179.97438 * 28 27 26 44 44 H 1.08002 * 121.02078 * 359.97438 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3039 -1.4437 -1.6201 6 7 2.4555 0.1960 -2.2875 7 6 2.5064 -0.2090 -3.5946 8 1 2.2508 -1.2254 -3.8553 9 6 2.8866 0.6868 -4.5845 10 7 3.1986 1.9254 -4.2666 11 14 2.9553 0.1345 -6.3676 12 1 4.3104 -0.3920 -6.6708 13 1 1.9476 -0.9322 -6.5946 14 1 2.6628 1.2888 -7.2550 15 6 3.2869 -1.5179 -0.6957 16 6 2.8160 -1.8832 0.7341 17 7 2.0353 -0.7163 1.1840 18 6 1.8163 -0.3650 2.4666 19 8 1.2452 0.6773 2.7223 20 6 2.2704 -1.2466 3.5620 21 6 2.4433 -2.6239 3.3379 22 7 2.8485 -3.4260 4.2882 23 6 3.1092 -2.9793 5.5222 24 6 3.5380 -3.8605 6.5324 25 9 3.6924 -5.1756 6.2643 26 6 3.7971 -3.3822 7.7825 27 6 3.6437 -2.0302 8.0809 28 6 3.2296 -1.1478 7.1304 29 6 2.9531 -1.6045 5.8304 30 6 2.5247 -0.7221 4.8239 31 1 -0.3634 -1.0275 0.0195 32 1 -0.3633 0.5308 0.8799 33 1 -0.3633 0.4967 -0.8997 34 1 2.6848 1.1089 -2.0533 35 1 3.4646 2.5513 -4.9583 36 1 3.4810 -2.4146 -1.2842 37 1 4.1666 -0.8748 -0.6657 38 1 2.1879 -2.7737 0.7106 39 1 3.6742 -2.0403 1.3876 40 1 2.2408 -3.0283 2.3571 41 1 4.1263 -4.0626 8.5541 42 1 3.8554 -1.6774 9.0795 43 1 3.1141 -0.1020 7.3743 44 1 2.3963 0.3312 5.0250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986560328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:48 Heat of formation + Delta-G solvation = -17.137998 kcal Electronic energy + Delta-G solvation = -29015.964805 eV Core-core repulsion = 24847.537518 eV Total energy + Delta-G solvation = -4168.427287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.93773 -42.20548 -41.03246 -38.92090 -38.03635 -35.97224 -34.46026 -33.59135 -32.51983 -31.78972 -30.94389 -30.50828 -26.97954 -26.26755 -25.47825 -24.65233 -23.78239 -23.16625 -21.79517 -20.84709 -19.70270 -19.24181 -18.90816 -18.17298 -17.87089 -17.46900 -16.87392 -16.58988 -16.43160 -16.33138 -15.75781 -15.61952 -15.50311 -15.15611 -14.98633 -14.73482 -14.47384 -14.38976 -14.25458 -14.07456 -13.61911 -13.37007 -13.20964 -13.09083 -12.91958 -12.80343 -12.64606 -12.58675 -12.41763 -12.13970 -12.11330 -11.70644 -11.63661 -11.51955 -11.37529 -10.90867 -10.67771 -10.07727 -9.78889 -9.25972 -9.02258 -7.93265 -5.23084 -0.98567 -0.60553 0.59037 1.37091 1.50420 1.51373 1.59667 1.72175 1.99799 2.57929 2.80479 2.83802 3.04339 3.23452 3.40027 3.55732 3.59048 3.63673 3.70170 3.74367 3.81924 3.99078 4.10014 4.16466 4.23553 4.34845 4.37203 4.38429 4.49448 4.56530 4.65656 4.67719 4.78251 4.88964 4.95982 5.02457 5.05978 5.20299 5.21588 5.22506 5.27234 5.29344 5.43394 5.56089 5.68658 6.26939 6.38750 6.56390 6.92707 7.33836 8.05608 8.29001 9.30188 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023128 B = 0.002251 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.375202 B =12437.069187 C =13062.624272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.134 3.866 3 H 0.050 0.950 4 C 0.171 3.829 5 H 0.077 0.923 6 N -0.728 5.728 7 C -0.234 4.234 8 H 0.085 0.915 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.972 3.028 12 H -0.288 1.288 13 H -0.266 1.266 14 H -0.301 1.301 15 C -0.148 4.148 16 C 0.096 3.904 17 N -0.601 5.601 18 C 0.577 3.423 19 O -0.569 6.569 20 C -0.191 4.191 21 C 0.154 3.846 22 N -0.492 5.492 23 C 0.088 3.912 24 C 0.083 3.917 25 F -0.137 7.137 26 C -0.109 4.109 27 C -0.086 4.086 28 C -0.089 4.089 29 C -0.100 4.100 30 C 0.014 3.986 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.190 0.810 41 H 0.172 0.828 42 H 0.182 0.818 43 H 0.170 0.830 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 -11.212 27.620 29.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.068 0.932 4 C 0.061 3.939 5 H 0.095 0.905 6 N -0.367 5.367 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.801 3.199 12 H -0.216 1.216 13 H -0.191 1.191 14 H -0.228 1.228 15 C -0.188 4.188 16 C -0.026 4.026 17 N -0.333 5.333 18 C 0.367 3.633 19 O -0.450 6.450 20 C -0.196 4.196 21 C -0.019 4.019 22 N -0.199 5.199 23 C -0.034 4.034 24 C 0.063 3.937 25 F -0.116 7.116 26 C -0.130 4.130 27 C -0.104 4.104 28 C -0.108 4.108 29 C -0.102 4.102 30 C -0.013 4.013 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.203 0.797 35 H 0.058 0.942 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.206 0.794 41 H 0.190 0.810 42 H 0.200 0.800 43 H 0.188 0.812 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.212 -11.746 27.565 29.964 hybrid contribution 0.145 1.109 -1.414 1.803 sum 0.357 -10.637 26.151 28.234 Atomic orbital electron populations 1.21937 0.93729 1.02724 1.01879 1.21752 0.95053 0.95620 0.84582 0.93157 1.21452 0.94909 0.91089 0.86418 0.90525 1.42516 1.80573 1.10698 1.02946 1.19617 1.36485 0.96197 0.84286 0.89758 1.25565 1.03168 0.95990 1.02122 1.69830 1.54111 1.05040 1.33189 0.85158 0.77830 0.76745 0.80122 1.21560 1.19075 1.22805 1.23424 0.99215 1.01572 0.94633 1.22848 0.95638 0.88253 0.95814 1.48514 1.51614 1.28973 1.04248 1.17898 0.78995 0.84896 0.81532 1.90765 1.44738 1.25814 1.83658 1.20834 1.07738 0.95773 0.95300 1.23851 0.90536 0.88404 0.99146 1.67999 1.13086 1.38495 1.00331 1.19324 0.99826 0.92206 0.92055 1.17483 1.04486 0.77634 0.94058 1.91493 1.93220 1.32155 1.94719 1.21439 0.98622 0.98543 0.94360 1.21235 0.96576 0.90830 1.01717 1.21534 0.96850 1.02599 0.89806 1.18789 1.02493 0.92134 0.96802 1.22149 0.88274 1.01211 0.89639 0.90896 0.92899 0.91905 0.79677 0.94158 0.88807 0.92589 0.87730 0.89185 0.79366 0.81033 0.80047 0.81236 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.11 71.98 0.66 -3.91 16 2 C 0.13 4.56 3.19 45.29 0.14 4.71 16 3 H 0.05 2.03 7.70 -2.39 -0.02 2.01 16 4 C 0.17 6.17 3.12 46.18 0.14 6.31 16 5 H 0.08 2.66 7.81 -2.38 -0.02 2.64 16 6 N -0.73 -34.86 5.24 -317.33 -1.66 -36.52 16 7 C -0.23 -12.27 9.97 84.03 0.84 -11.43 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 10 N -0.97 -58.67 13.06 21.65 0.28 -58.38 16 11 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 12 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 14 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 15 C -0.15 -4.42 6.77 31.98 0.22 -4.21 16 16 C 0.10 2.22 4.99 86.85 0.43 2.65 16 17 N -0.60 -17.31 3.08 -790.82 -2.43 -19.75 16 18 C 0.58 17.15 7.40 86.76 0.64 17.80 16 19 O -0.57 -20.56 15.94 -3.92 -0.06 -20.62 16 20 C -0.19 -4.61 5.67 -20.00 -0.11 -4.72 16 21 C 0.15 3.46 9.23 85.42 0.79 4.25 16 22 N -0.49 -12.29 10.17 -187.54 -1.91 -14.20 16 23 C 0.09 1.95 6.61 40.33 0.27 2.22 16 24 C 0.08 1.60 7.30 22.44 0.16 1.76 16 25 F -0.14 -3.13 17.11 44.97 0.77 -2.36 16 26 C -0.11 -1.16 9.91 22.08 0.22 -0.94 16 27 C -0.09 -0.58 9.95 22.04 0.22 -0.36 16 28 C -0.09 -0.90 9.77 22.34 0.22 -0.69 16 29 C -0.10 -1.81 5.74 -21.29 -0.12 -1.93 16 30 C 0.01 0.28 9.46 23.01 0.22 0.50 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.74 7.13 -2.39 -0.02 1.72 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.37 19.77 7.53 -92.71 -0.70 19.07 16 35 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.10 1.80 6.82 -2.39 -0.02 1.79 16 39 H 0.09 1.84 6.85 -2.38 -0.02 1.83 16 40 H 0.19 3.50 4.59 -2.91 -0.01 3.48 16 41 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 42 H 0.18 -0.21 8.06 -2.91 -0.02 -0.23 16 43 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 44 H 0.17 2.93 7.89 -2.91 -0.02 2.90 16 Total: -1.00 -72.92 368.37 2.77 -70.15 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.36 Total: 26.51 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 5.40 Total: 8.22 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.72 Total: -128.85 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.06 Total: -20.62 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.77 Total: -2.36 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.92 2.77 -70.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986560328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.014 kcal (2) G-P(sol) polarization free energy of solvation -72.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds