Wall clock time and date at job start Wed Apr 1 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00084 * 2 1 4 4 C 1.54333 * 109.99245 * 238.96357 * 2 1 3 5 5 H 1.09006 * 110.85070 * 100.19463 * 4 2 1 6 6 N 1.46498 * 110.51709 * 336.97896 * 4 2 1 7 7 C 1.36937 * 120.00218 * 157.41731 * 6 4 2 8 8 H 1.07994 * 120.00442 * 0.02562 * 7 6 4 9 9 C 1.38815 * 120.00093 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99756 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00365 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47147 * 89.99908 * 11 9 7 13 13 H 1.48493 * 109.47317 * 210.00333 * 11 9 7 14 14 H 1.48498 * 109.46723 * 330.00167 * 11 9 7 15 15 C 1.55158 * 103.02388 * 218.66516 * 4 2 1 16 16 C 1.54906 * 101.58078 * 35.30510 * 15 4 2 17 17 N 1.47026 * 109.88548 * 121.09837 * 2 1 3 18 18 C 1.34774 * 125.64361 * 298.39763 * 17 2 1 19 19 O 1.21603 * 120.00569 * 4.76717 * 18 17 2 20 20 C 1.47397 * 119.99721 * 184.77097 * 18 17 2 21 21 C 1.38961 * 120.65651 * 317.97097 * 20 18 17 22 22 C 1.38730 * 120.73630 * 180.02562 * 21 20 18 23 23 C 1.37495 * 121.67765 * 359.96913 * 22 21 20 24 24 F 1.35103 * 119.85281 * 180.02562 * 23 22 21 25 25 C 1.40585 * 120.29840 * 359.97438 * 23 22 21 26 26 C 1.40579 * 122.24761 * 180.02562 * 25 23 22 27 27 C 1.36323 * 118.64859 * 180.02562 * 26 25 23 28 28 N 1.32483 * 121.87490 * 359.97438 * 27 26 25 29 29 C 1.31366 * 122.69213 * 0.02562 * 28 27 26 30 30 C 1.40018 * 119.84492 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.47003 * 306.46948 * 1 2 3 32 32 H 1.08993 * 109.46892 * 66.47459 * 1 2 3 33 33 H 1.09007 * 109.46928 * 186.47377 * 1 2 3 34 34 H 0.97006 * 119.99721 * 337.41907 * 6 4 2 35 35 H 0.97001 * 119.99649 * 179.97438 * 10 9 7 36 36 H 1.09005 * 110.99947 * 277.23166 * 15 4 2 37 37 H 1.08995 * 111.03335 * 153.39696 * 15 4 2 38 38 H 1.09000 * 110.36716 * 204.15108 * 16 15 4 39 39 H 1.09003 * 110.36220 * 81.82650 * 16 15 4 40 40 H 1.07997 * 119.62737 * 0.02562 * 21 20 18 41 41 H 1.08004 * 119.16215 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.67484 * 0.31314 * 26 25 23 43 43 H 1.08005 * 119.05775 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.07771 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 2.3597 -0.0449 -2.0192 6 7 1.0465 -1.6789 -1.7494 7 6 1.0891 -2.0924 -3.0542 8 1 1.8682 -1.7324 -3.7096 9 6 0.1313 -2.9751 -3.5342 10 7 -0.8181 -3.4142 -2.7352 11 14 0.1897 -3.5397 -5.3138 12 1 1.0156 -4.7695 -5.4161 13 1 -1.1880 -3.8279 -5.7872 14 1 0.7879 -2.4705 -6.1529 15 6 3.2864 -1.5184 -0.6915 16 6 2.8100 -1.8825 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.8074 -0.3621 2.4656 19 8 1.0709 0.5713 2.7208 20 6 2.4566 -1.1086 3.5583 21 6 2.5399 -2.4951 3.5174 22 6 3.1501 -3.1993 4.5452 23 6 3.6927 -2.5607 5.6352 24 9 4.2789 -3.2832 6.6149 25 6 3.6413 -1.1593 5.7345 26 6 4.1832 -0.4645 6.8299 27 6 4.0920 0.8955 6.8511 28 7 3.5103 1.5730 5.8724 29 6 2.9836 0.9886 4.8204 30 6 3.0249 -0.4061 4.7044 31 1 -0.3633 0.6109 0.8265 32 1 -0.3633 0.4102 -0.9422 33 1 -0.3633 -1.0212 0.1159 34 1 0.3468 -2.0025 -1.1606 35 1 -1.4876 -4.0307 -3.0708 36 1 4.1670 -0.8768 -0.6580 37 1 3.4813 -2.4155 -1.2791 38 1 3.6656 -2.0412 1.3931 39 1 2.1801 -2.7718 0.7113 40 1 2.1249 -3.0303 2.6762 41 1 3.2011 -4.2766 4.4871 42 1 4.6661 -0.9971 7.6359 43 1 4.5064 1.4360 7.6893 44 1 2.5199 1.5826 4.0467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986693548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:33 Heat of formation + Delta-G solvation = 4.026154 kcal Electronic energy + Delta-G solvation = -29779.761004 eV Core-core repulsion = 25612.251463 eV Total energy + Delta-G solvation = -4167.509541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.38600 -41.13558 -39.91507 -37.71188 -37.15073 -34.11991 -33.03613 -31.73574 -31.55178 -30.91436 -29.93643 -28.64292 -25.45723 -25.00650 -24.09654 -23.80421 -23.46589 -22.04550 -20.07849 -19.15576 -18.61150 -18.01305 -17.67163 -17.37610 -16.53351 -16.38279 -16.08617 -15.55289 -15.29729 -15.02550 -14.82924 -14.39062 -14.28153 -14.02793 -13.85892 -13.62268 -13.49793 -13.31527 -12.83139 -12.75895 -12.44452 -12.32126 -12.14538 -11.84541 -11.76559 -11.37486 -11.04489 -11.02602 -10.83503 -10.69473 -10.43732 -10.28850 -10.10757 -9.85684 -9.73473 -9.66443 -9.55771 -9.02195 -8.51143 -8.29647 -7.09849 -5.88036 -3.17926 -0.27173 0.44268 1.24319 2.34886 2.82379 3.03927 3.36466 3.42702 3.44155 3.59216 3.65564 4.09491 4.12474 4.27298 4.32087 4.44615 4.49281 4.55213 4.91000 4.95927 5.02827 5.17111 5.28637 5.33492 5.38898 5.45211 5.49022 5.55911 5.61622 5.66183 5.69541 5.73309 5.77378 5.90878 6.00791 6.22725 6.24977 6.32610 6.35078 6.44165 6.54697 6.62855 6.78049 6.93572 7.60818 7.62308 7.66114 8.15208 8.30104 9.42121 9.96281 10.31358 11.34003 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.002755 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.202576 B =10159.920248 C =10984.372200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 H 0.075 0.925 4 C 0.172 3.828 5 H 0.071 0.929 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.160 4.160 16 C 0.098 3.902 17 N -0.596 5.596 18 C 0.571 3.429 19 O -0.532 6.532 20 C -0.094 4.094 21 C -0.062 4.062 22 C -0.133 4.133 23 C 0.117 3.883 24 F -0.128 7.128 25 C -0.053 4.053 26 C -0.153 4.153 27 C 0.083 3.917 28 N -0.480 5.480 29 C 0.158 3.842 30 C -0.059 4.059 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.316 2.867 16.971 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 H 0.093 0.907 4 C 0.060 3.940 5 H 0.089 0.911 6 N -0.356 5.356 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.201 4.201 16 C -0.024 4.024 17 N -0.329 5.329 18 C 0.359 3.641 19 O -0.411 6.411 20 C -0.099 4.099 21 C -0.081 4.081 22 C -0.153 4.153 23 C 0.097 3.903 24 F -0.106 7.106 25 C -0.059 4.059 26 C -0.173 4.173 27 C -0.062 4.062 28 N -0.188 5.188 29 C -0.011 4.011 30 C -0.062 4.062 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.225 0.775 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.175 0.825 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.964 4.237 17.204 20.836 hybrid contribution -0.033 -1.900 -0.578 1.986 sum 10.931 2.337 16.627 20.035 Atomic orbital electron populations 1.21928 0.93864 1.02718 1.02198 1.22082 0.95670 0.95666 0.84200 0.90747 1.21225 0.89108 0.91701 0.91998 0.91116 1.42557 1.30653 1.51958 1.10461 1.19222 1.09641 1.21472 0.87261 0.91011 1.24745 0.97655 1.00122 0.98007 1.69656 1.16840 1.36445 1.34795 0.86198 0.76793 0.78567 0.84638 1.21727 1.21792 1.20710 1.23538 0.99349 1.02580 0.94663 1.22538 0.94666 0.88553 0.96682 1.48591 1.51326 1.28343 1.04597 1.17483 0.81490 0.83790 0.81295 1.90789 1.37232 1.29949 1.83087 1.20980 1.00489 0.93752 0.94661 1.21451 0.95667 0.92683 0.98291 1.21040 0.99491 1.01778 0.92957 1.17588 0.97370 0.87979 0.87349 1.91518 1.81450 1.77209 1.60459 1.17991 1.00049 0.91988 0.95912 1.21833 1.01246 0.96061 0.98132 1.22310 0.95717 0.91315 0.96836 1.67603 1.08433 1.41266 1.01453 1.23527 0.92071 0.90486 0.95025 1.19498 0.98459 0.95107 0.93141 0.92476 0.91061 0.91848 0.77507 0.93384 0.91912 0.89203 0.91328 0.90626 0.83146 0.83442 0.83890 0.82463 0.80402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.17 37.16 0.30 -2.34 16 2 C 0.13 2.05 3.45 -66.95 -0.23 1.82 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.17 3.00 3.48 -66.09 -0.23 2.77 16 5 H 0.07 1.24 8.11 -51.93 -0.42 0.81 16 6 N -0.71 -15.87 4.60 -51.65 -0.24 -16.10 16 7 C -0.25 -6.19 9.97 -15.06 -0.15 -6.34 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 11 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C -0.16 -2.35 6.77 -24.58 -0.17 -2.51 16 16 C 0.10 1.31 5.24 -2.53 -0.01 1.29 16 17 N -0.60 -8.79 3.06 -164.28 -0.50 -9.30 16 18 C 0.57 8.60 6.95 -12.53 -0.09 8.52 16 19 O -0.53 -9.31 14.09 5.28 0.07 -9.24 16 20 C -0.09 -1.20 5.54 -102.82 -0.57 -1.77 16 21 C -0.06 -0.66 7.97 -39.13 -0.31 -0.97 16 22 C -0.13 -1.23 9.90 -39.67 -0.39 -1.63 16 23 C 0.12 1.20 7.28 -38.97 -0.28 0.92 16 24 F -0.13 -1.27 16.72 2.25 0.04 -1.24 16 25 C -0.05 -0.60 5.75 -106.80 -0.61 -1.21 16 26 C -0.15 -1.47 9.70 -39.39 -0.38 -1.86 16 27 C 0.08 0.82 11.07 -17.96 -0.20 0.63 16 28 N -0.48 -6.05 10.30 -13.23 -0.14 -6.19 16 29 C 0.16 2.08 10.50 -17.08 -0.18 1.90 16 30 C -0.06 -0.75 5.90 -104.82 -0.62 -1.37 16 31 H 0.06 1.01 6.95 -51.93 -0.36 0.65 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.24 6.53 -51.92 -0.34 0.90 16 34 H 0.39 9.31 5.68 -40.82 -0.23 9.08 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.07 0.76 6.79 -51.93 -0.35 0.41 16 39 H 0.08 1.07 7.37 -51.93 -0.38 0.69 16 40 H 0.15 1.49 6.03 -52.49 -0.32 1.17 16 41 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.14 1.03 7.81 -52.49 -0.41 0.62 16 43 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.18 2.43 6.22 -52.49 -0.33 2.10 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -29.67 362.18 -9.05 -38.72 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.22 Total: 9.86 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -4.22 Total: -2.48 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.15 Total: -57.24 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.67 -9.05 -38.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986693548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.750 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds