Wall clock time and date at job start Wed Apr 1 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00084 * 2 1 4 4 C 1.54333 * 109.99245 * 238.96357 * 2 1 3 5 5 H 1.09006 * 110.85070 * 100.19463 * 4 2 1 6 6 N 1.46498 * 110.51709 * 336.97896 * 4 2 1 7 7 C 1.36937 * 120.00218 * 157.41731 * 6 4 2 8 8 H 1.07994 * 120.00442 * 0.02562 * 7 6 4 9 9 C 1.38815 * 120.00093 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99756 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00365 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47147 * 89.99908 * 11 9 7 13 13 H 1.48493 * 109.47317 * 210.00333 * 11 9 7 14 14 H 1.48498 * 109.46723 * 330.00167 * 11 9 7 15 15 C 1.55158 * 103.02388 * 218.66516 * 4 2 1 16 16 C 1.54906 * 101.58078 * 35.30510 * 15 4 2 17 17 N 1.47026 * 109.88548 * 121.09837 * 2 1 3 18 18 C 1.34774 * 125.64361 * 298.39763 * 17 2 1 19 19 O 1.21603 * 120.00569 * 4.76717 * 18 17 2 20 20 C 1.47397 * 119.99721 * 184.77097 * 18 17 2 21 21 C 1.38961 * 120.65651 * 317.97097 * 20 18 17 22 22 C 1.38730 * 120.73630 * 180.02562 * 21 20 18 23 23 C 1.37495 * 121.67765 * 359.96913 * 22 21 20 24 24 F 1.35103 * 119.85281 * 180.02562 * 23 22 21 25 25 C 1.40585 * 120.29840 * 359.97438 * 23 22 21 26 26 C 1.40579 * 122.24761 * 180.02562 * 25 23 22 27 27 C 1.36323 * 118.64859 * 180.02562 * 26 25 23 28 28 N 1.32483 * 121.87490 * 359.97438 * 27 26 25 29 29 C 1.31366 * 122.69213 * 0.02562 * 28 27 26 30 30 C 1.40018 * 119.84492 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.47003 * 306.46948 * 1 2 3 32 32 H 1.08993 * 109.46892 * 66.47459 * 1 2 3 33 33 H 1.09007 * 109.46928 * 186.47377 * 1 2 3 34 34 H 0.97006 * 119.99721 * 337.41907 * 6 4 2 35 35 H 0.97001 * 119.99649 * 179.97438 * 10 9 7 36 36 H 1.09005 * 110.99947 * 277.23166 * 15 4 2 37 37 H 1.08995 * 111.03335 * 153.39696 * 15 4 2 38 38 H 1.09000 * 110.36716 * 204.15108 * 16 15 4 39 39 H 1.09003 * 110.36220 * 81.82650 * 16 15 4 40 40 H 1.07997 * 119.62737 * 0.02562 * 21 20 18 41 41 H 1.08004 * 119.16215 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.67484 * 0.31314 * 26 25 23 43 43 H 1.08005 * 119.05775 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.07771 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 2.3597 -0.0449 -2.0192 6 7 1.0465 -1.6789 -1.7494 7 6 1.0891 -2.0924 -3.0542 8 1 1.8682 -1.7324 -3.7096 9 6 0.1313 -2.9751 -3.5342 10 7 -0.8181 -3.4142 -2.7352 11 14 0.1897 -3.5397 -5.3138 12 1 1.0156 -4.7695 -5.4161 13 1 -1.1880 -3.8279 -5.7872 14 1 0.7879 -2.4705 -6.1529 15 6 3.2864 -1.5184 -0.6915 16 6 2.8100 -1.8825 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.8074 -0.3621 2.4656 19 8 1.0709 0.5713 2.7208 20 6 2.4566 -1.1086 3.5583 21 6 2.5399 -2.4951 3.5174 22 6 3.1501 -3.1993 4.5452 23 6 3.6927 -2.5607 5.6352 24 9 4.2789 -3.2832 6.6149 25 6 3.6413 -1.1593 5.7345 26 6 4.1832 -0.4645 6.8299 27 6 4.0920 0.8955 6.8511 28 7 3.5103 1.5730 5.8724 29 6 2.9836 0.9886 4.8204 30 6 3.0249 -0.4061 4.7044 31 1 -0.3633 0.6109 0.8265 32 1 -0.3633 0.4102 -0.9422 33 1 -0.3633 -1.0212 0.1159 34 1 0.3468 -2.0025 -1.1606 35 1 -1.4876 -4.0307 -3.0708 36 1 4.1670 -0.8768 -0.6580 37 1 3.4813 -2.4155 -1.2791 38 1 3.6656 -2.0412 1.3931 39 1 2.1801 -2.7718 0.7113 40 1 2.1249 -3.0303 2.6762 41 1 3.2011 -4.2766 4.4871 42 1 4.6661 -0.9971 7.6359 43 1 4.5064 1.4360 7.6893 44 1 2.5199 1.5826 4.0467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986693548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:32 Heat of formation + Delta-G solvation = -12.604127 kcal Electronic energy + Delta-G solvation = -29780.482147 eV Core-core repulsion = 25612.251463 eV Total energy + Delta-G solvation = -4168.230684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.16978 -42.08051 -41.04135 -38.94331 -38.09355 -35.76278 -34.02989 -33.23880 -32.39611 -32.23664 -31.13903 -29.98354 -26.84704 -25.97519 -25.51414 -24.85151 -24.65758 -23.13722 -21.31266 -20.29219 -19.59164 -19.31019 -18.84986 -18.51236 -17.71582 -17.48385 -16.89067 -16.67451 -16.30682 -16.11970 -16.01152 -15.66691 -15.56691 -15.15741 -15.00700 -14.79950 -14.58504 -14.52007 -14.12398 -13.90125 -13.75039 -13.41047 -13.29021 -12.97548 -12.90048 -12.82946 -12.65520 -12.54163 -12.37299 -12.18705 -12.04046 -11.63976 -11.46031 -11.23719 -10.98156 -10.89063 -10.65838 -10.40183 -9.72669 -9.14730 -8.96395 -7.89526 -5.17078 -1.13233 -0.37873 0.37027 1.41469 1.51846 1.53014 1.60503 1.75375 1.96118 2.59990 2.76203 2.79816 3.19597 3.28344 3.39856 3.44361 3.47744 3.62243 3.70793 3.76335 3.89858 3.93886 4.21876 4.26059 4.28980 4.30412 4.38615 4.47869 4.54285 4.59064 4.63770 4.73408 4.83052 4.83573 4.87109 4.95176 4.96293 5.09146 5.22555 5.34091 5.36955 5.41616 5.46422 5.53117 5.60626 6.32085 6.44694 6.81217 6.98185 7.40156 8.13670 8.37355 9.33557 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.002755 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.202576 B =10159.920248 C =10984.372200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.132 3.868 3 H 0.086 0.914 4 C 0.164 3.836 5 H 0.074 0.926 6 N -0.724 5.724 7 C -0.232 4.232 8 H 0.080 0.920 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.966 3.034 12 H -0.289 1.289 13 H -0.304 1.304 14 H -0.271 1.271 15 C -0.148 4.148 16 C 0.102 3.898 17 N -0.596 5.596 18 C 0.572 3.428 19 O -0.564 6.564 20 C -0.116 4.116 21 C -0.048 4.048 22 C -0.126 4.126 23 C 0.124 3.876 24 F -0.122 7.122 25 C -0.066 4.066 26 C -0.142 4.142 27 C 0.074 3.926 28 N -0.497 5.497 29 C 0.137 3.863 30 C -0.067 4.067 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.378 0.622 35 H 0.248 0.752 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.158 0.842 41 H 0.178 0.822 42 H 0.172 0.828 43 H 0.190 0.810 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.879 2.058 18.350 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.029 3.971 3 H 0.104 0.896 4 C 0.054 3.946 5 H 0.092 0.908 6 N -0.365 5.365 7 C -0.364 4.364 8 H 0.098 0.902 9 C -0.264 4.264 10 N -0.619 5.619 11 Si 0.796 3.204 12 H -0.216 1.216 13 H -0.231 1.231 14 H -0.196 1.196 15 C -0.189 4.189 16 C -0.019 4.019 17 N -0.328 5.328 18 C 0.362 3.638 19 O -0.445 6.445 20 C -0.121 4.121 21 C -0.067 4.067 22 C -0.146 4.146 23 C 0.104 3.896 24 F -0.101 7.101 25 C -0.072 4.072 26 C -0.161 4.161 27 C -0.070 4.070 28 N -0.205 5.205 29 C -0.032 4.032 30 C -0.070 4.070 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.212 0.788 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.176 0.824 41 H 0.195 0.805 42 H 0.190 0.810 43 H 0.207 0.793 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.590 3.452 18.580 23.277 hybrid contribution -0.749 -1.587 -0.869 1.959 sum 12.840 1.865 17.711 21.955 Atomic orbital electron populations 1.21760 0.95398 1.00944 1.01303 1.21910 0.94315 0.96338 0.84555 0.89566 1.21430 0.89251 0.91378 0.92561 0.90799 1.42670 1.31643 1.52697 1.09538 1.19596 1.08614 1.19716 0.88440 0.90199 1.25433 0.98134 1.01488 1.01342 1.69807 1.17943 1.37857 1.36257 0.85247 0.75924 0.78252 0.80951 1.21590 1.23080 1.19566 1.23385 0.98678 1.01999 0.94798 1.22580 0.95286 0.87552 0.96524 1.48572 1.51386 1.28578 1.04248 1.17851 0.80931 0.83417 0.81638 1.90766 1.38654 1.31502 1.83554 1.20757 1.02434 0.94451 0.94422 1.21574 0.94625 0.91733 0.98760 1.21282 0.98296 1.03149 0.91891 1.17616 0.96853 0.87593 0.87521 1.91538 1.81270 1.76978 1.60270 1.18205 1.00284 0.92659 0.96100 1.22186 0.99890 0.96010 0.97996 1.22846 0.95270 0.91955 0.96937 1.67571 1.08756 1.42248 1.01897 1.23303 0.93513 0.90913 0.95448 1.19487 0.98974 0.94932 0.93596 0.92776 0.92270 0.94086 0.78765 0.94287 0.89189 0.90271 0.88263 0.91455 0.82424 0.80451 0.81021 0.79293 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 8.17 71.98 0.59 -4.41 16 2 C 0.13 4.26 3.45 45.34 0.16 4.41 16 3 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.16 5.60 3.48 46.18 0.16 5.76 16 5 H 0.07 2.49 8.11 -2.38 -0.02 2.47 16 6 N -0.72 -32.36 4.60 -317.31 -1.46 -33.82 16 7 C -0.23 -11.66 9.97 84.03 0.84 -10.82 16 8 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 9 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 10 N -0.97 -56.26 13.06 21.65 0.28 -55.98 16 11 Si 0.97 43.89 29.55 68.60 2.03 45.91 16 12 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 C -0.15 -4.05 6.77 31.99 0.22 -3.83 16 16 C 0.10 2.55 5.24 86.85 0.45 3.01 16 17 N -0.60 -17.24 3.06 -791.92 -2.43 -19.66 16 18 C 0.57 17.25 6.95 86.66 0.60 17.85 16 19 O -0.56 -20.39 14.09 -4.04 -0.06 -20.45 16 20 C -0.12 -2.85 5.54 -18.70 -0.10 -2.96 16 21 C -0.05 -0.92 7.97 22.56 0.18 -0.74 16 22 C -0.13 -1.94 9.90 22.21 0.22 -1.72 16 23 C 0.12 2.16 7.28 22.67 0.17 2.33 16 24 F -0.12 -1.98 16.72 44.97 0.75 -1.23 16 25 C -0.07 -1.35 5.75 -21.28 -0.12 -1.47 16 26 C -0.14 -2.33 9.70 22.39 0.22 -2.11 16 27 C 0.07 1.33 11.07 84.15 0.93 2.26 16 28 N -0.50 -12.27 10.30 -195.76 -2.02 -14.29 16 29 C 0.14 3.65 10.50 85.19 0.89 4.55 16 30 C -0.07 -1.64 5.90 -19.99 -0.12 -1.76 16 31 H 0.05 1.99 6.95 -2.38 -0.02 1.97 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 1.67 6.53 -2.38 -0.02 1.66 16 34 H 0.38 18.57 5.68 -92.70 -0.53 18.04 16 35 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.10 1.90 6.79 -2.39 -0.02 1.89 16 39 H 0.07 1.82 7.37 -2.39 -0.02 1.81 16 40 H 0.16 2.78 6.03 -2.91 -0.02 2.77 16 41 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.17 1.78 7.81 -2.91 -0.02 1.75 16 43 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.16 4.70 6.22 -2.91 -0.02 4.68 16 Total: -1.00 -65.56 362.18 3.38 -62.17 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.53 Total: 30.39 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.75 Total: 6.96 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -5.62 Total: -123.76 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.75 Total: -1.23 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.56 3.38 -62.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986693548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.570 kcal (2) G-P(sol) polarization free energy of solvation -65.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds