Wall clock time and date at job start Wed Apr 1 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99501 * 2 1 4 4 C 1.54315 * 109.77613 * 121.15831 * 2 1 3 5 5 H 1.09002 * 110.92344 * 23.46945 * 4 2 1 6 6 N 1.46494 * 110.74101 * 260.21648 * 4 2 1 7 7 C 1.36939 * 120.00199 * 160.11038 * 6 4 2 8 8 H 1.08000 * 119.99562 * 359.97438 * 7 6 4 9 9 C 1.38814 * 120.00302 * 179.97438 * 7 6 4 10 10 N 1.31616 * 119.99773 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99771 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47142 * 90.00213 * 11 9 7 13 13 H 1.48502 * 109.46909 * 209.99972 * 11 9 7 14 14 H 1.48493 * 109.47388 * 330.00062 * 11 9 7 15 15 C 1.55149 * 102.86300 * 141.88520 * 4 2 1 16 16 C 1.54913 * 101.58122 * 324.30287 * 15 4 2 17 17 N 1.47026 * 109.87788 * 238.90794 * 2 1 3 18 18 C 1.34774 * 125.65009 * 61.67936 * 17 2 1 19 19 O 1.21607 * 119.99724 * 355.10791 * 18 17 2 20 20 C 1.47393 * 120.00069 * 175.11035 * 18 17 2 21 21 C 1.38957 * 120.65088 * 41.12605 * 20 18 17 22 22 C 1.38740 * 120.72867 * 179.71740 * 21 20 18 23 23 C 1.37496 * 121.67749 * 0.56815 * 22 21 20 24 24 F 1.35101 * 119.85045 * 179.73922 * 23 22 21 25 25 C 1.40592 * 120.29919 * 359.72170 * 23 22 21 26 26 C 1.40580 * 122.25124 * 179.97438 * 25 23 22 27 27 C 1.36316 * 118.65050 * 180.02562 * 26 25 23 28 28 N 1.32489 * 121.87292 * 0.04884 * 27 26 25 29 29 C 1.31363 * 122.69207 * 359.97067 * 28 27 26 30 30 C 1.40014 * 119.84709 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47601 * 179.64241 * 1 2 3 32 32 H 1.09008 * 109.47043 * 299.63720 * 1 2 3 33 33 H 1.08999 * 109.47667 * 59.63580 * 1 2 3 34 34 H 0.97004 * 120.00354 * 340.10579 * 6 4 2 35 35 H 0.97005 * 119.99411 * 179.97438 * 10 9 7 36 36 H 1.09000 * 111.00530 * 206.23316 * 15 4 2 37 37 H 1.08998 * 111.00599 * 82.37555 * 15 4 2 38 38 H 1.09002 * 110.36605 * 278.16824 * 16 15 4 39 39 H 1.09004 * 110.36335 * 155.85289 * 16 15 4 40 40 H 1.07996 * 119.63670 * 359.97438 * 21 20 18 41 41 H 1.07997 * 119.15800 * 180.26346 * 22 21 20 42 42 H 1.08004 * 120.67643 * 0.02562 * 26 25 23 43 43 H 1.07998 * 119.06618 * 180.02562 * 27 26 25 44 44 H 1.07997 * 120.07897 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0521 -0.7513 1.2427 5 1 1.3050 -1.4514 1.6167 6 7 2.4467 0.1921 2.2916 7 6 2.5467 -0.2304 3.5903 8 1 2.3343 -1.2591 3.8413 9 6 2.9212 0.6635 4.5841 10 7 3.0168 0.2574 5.8324 11 14 3.2893 2.4426 4.1498 12 1 2.0424 3.2436 4.2449 13 1 4.2988 2.9841 5.0948 14 1 3.8194 2.5145 2.7645 15 6 3.2888 -1.5101 0.6932 16 6 2.8190 -1.8762 -0.7369 17 7 2.0299 -0.7140 -1.1840 18 6 1.8084 -0.3612 -2.4658 19 8 1.0714 0.5719 -2.7208 20 6 2.4595 -1.1061 -3.5583 21 6 2.5603 -2.4912 -3.5095 22 6 3.1676 -3.1945 -4.5398 23 6 3.6996 -2.5554 -5.6348 24 9 4.2874 -3.2765 -6.6144 25 6 3.6342 -1.1549 -5.7399 26 6 4.1648 -0.4596 -6.8404 27 6 4.0614 0.8993 -6.8666 28 7 3.4785 1.5756 -5.8877 29 6 2.9623 0.9907 -4.8308 30 6 3.0174 -0.4030 -4.7090 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3633 0.5082 0.8933 33 1 -0.3634 0.5195 -0.8867 34 1 2.6373 1.1162 2.0662 35 1 3.2788 0.8820 6.5269 36 1 3.4897 -2.4065 1.2798 37 1 4.1638 -0.8608 0.6627 38 1 2.1971 -2.7711 -0.7144 39 1 3.6776 -2.0264 -1.3914 40 1 2.1579 -3.0264 -2.6622 41 1 3.2283 -4.2709 -4.4777 42 1 4.6448 -0.9913 -7.6488 43 1 4.4663 1.4402 -7.7091 44 1 2.4971 1.5835 -4.0572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986693557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:38 Heat of formation + Delta-G solvation = -15.695033 kcal Electronic energy + Delta-G solvation = -29554.292035 eV Core-core repulsion = 25385.927319 eV Total energy + Delta-G solvation = -4168.364716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.15721 -42.09340 -41.04835 -38.93672 -38.09890 -36.05315 -34.07294 -33.46439 -32.40133 -32.33321 -31.53878 -30.22114 -26.97855 -25.98526 -25.06313 -24.79155 -24.33846 -23.16563 -21.77419 -20.67398 -19.63879 -19.48801 -18.85114 -18.55002 -17.79808 -17.45005 -16.89077 -16.67713 -16.33532 -16.14159 -16.05336 -15.87495 -15.50036 -15.15875 -14.98627 -14.79414 -14.64787 -14.58087 -14.29020 -13.91644 -13.73643 -13.50500 -13.38030 -13.33341 -13.03974 -12.90738 -12.72291 -12.60660 -12.52459 -12.13926 -12.02035 -11.80297 -11.58020 -11.25135 -11.05305 -10.92225 -10.66906 -10.39772 -9.77594 -9.32075 -9.14644 -8.01574 -5.35136 -1.13100 -0.37416 0.35813 1.38904 1.40200 1.40456 1.46556 1.67033 1.96703 2.48155 2.77182 2.79296 3.17195 3.27475 3.30419 3.40433 3.47943 3.52418 3.61006 3.66992 3.74683 3.91404 4.13620 4.21248 4.27560 4.31034 4.34604 4.44728 4.49050 4.56639 4.61759 4.67858 4.70587 4.82958 4.86223 4.91494 4.95963 5.03238 5.22701 5.25289 5.29459 5.41614 5.43057 5.53251 5.78971 6.22282 6.40359 6.79749 6.95183 7.06995 7.82249 7.98962 9.19316 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.002774 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.225391 B =10090.264217 C =10674.003765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.132 3.868 3 H 0.057 0.943 4 C 0.173 3.827 5 H 0.077 0.923 6 N -0.745 5.745 7 C -0.221 4.221 8 H 0.069 0.931 9 C -0.057 4.057 10 N -0.980 5.980 11 Si 0.943 3.057 12 H -0.282 1.282 13 H -0.298 1.298 14 H -0.258 1.258 15 C -0.150 4.150 16 C 0.097 3.903 17 N -0.598 5.598 18 C 0.574 3.426 19 O -0.565 6.565 20 C -0.119 4.119 21 C -0.041 4.041 22 C -0.124 4.124 23 C 0.121 3.879 24 F -0.124 7.124 25 C -0.068 4.068 26 C -0.142 4.142 27 C 0.071 3.929 28 N -0.500 5.500 29 C 0.133 3.867 30 C -0.068 4.068 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.363 0.637 35 H 0.257 0.743 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.187 0.813 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 -9.882 -27.794 29.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.028 3.972 3 H 0.075 0.925 4 C 0.064 3.936 5 H 0.094 0.906 6 N -0.388 5.388 7 C -0.352 4.352 8 H 0.087 0.913 9 C -0.249 4.249 10 N -0.630 5.630 11 Si 0.771 3.229 12 H -0.208 1.208 13 H -0.225 1.225 14 H -0.183 1.183 15 C -0.190 4.190 16 C -0.025 4.025 17 N -0.330 5.330 18 C 0.364 3.636 19 O -0.445 6.445 20 C -0.125 4.125 21 C -0.059 4.059 22 C -0.143 4.143 23 C 0.102 3.898 24 F -0.102 7.102 25 C -0.074 4.074 26 C -0.161 4.161 27 C -0.073 4.073 28 N -0.208 5.208 29 C -0.036 4.036 30 C -0.071 4.071 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.196 0.804 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.193 0.807 41 H 0.202 0.798 42 H 0.189 0.811 43 H 0.204 0.796 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.497 -8.621 -28.041 29.375 hybrid contribution 0.400 0.605 0.419 0.837 sum 1.896 -8.016 -27.623 28.825 Atomic orbital electron populations 1.22002 0.93734 1.02866 1.02123 1.21697 0.95284 0.95691 0.84569 0.92460 1.21435 0.95320 0.90952 0.85853 0.90552 1.42715 1.83027 1.09024 1.04010 1.18983 1.36881 0.95974 0.83354 0.91268 1.25345 1.02730 1.01703 0.95127 1.69848 1.56472 1.35974 1.00753 0.85598 0.77694 0.81736 0.77858 1.20805 1.22476 1.18251 1.23393 0.98917 1.01635 0.95104 1.22824 0.96029 0.88308 0.95330 1.48453 1.51374 1.29238 1.03945 1.17871 0.80941 0.83283 0.81537 1.90779 1.38842 1.31325 1.83556 1.20724 1.02812 0.94864 0.94066 1.21702 0.94051 0.91217 0.98944 1.21370 0.98057 1.03375 0.91547 1.17690 0.96910 0.87439 0.87782 1.91540 1.81216 1.76975 1.60450 1.18217 1.00299 0.92956 0.95933 1.22188 0.99877 0.95915 0.98138 1.22817 0.95394 0.92129 0.96981 1.67549 1.08902 1.42409 1.01979 1.23296 0.93745 0.91260 0.95327 1.19500 0.99053 0.94717 0.93874 0.91103 0.91949 0.92371 0.80417 0.93414 0.89183 0.92128 0.87472 0.88353 0.80726 0.79813 0.81052 0.79570 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.10 71.98 0.65 -3.59 16 2 C 0.13 3.93 3.24 45.34 0.15 4.07 16 3 H 0.06 1.95 7.70 -2.39 -0.02 1.93 16 4 C 0.17 5.67 3.11 46.18 0.14 5.82 16 5 H 0.08 2.51 7.84 -2.39 -0.02 2.49 16 6 N -0.75 -32.11 5.05 -317.36 -1.60 -33.71 16 7 C -0.22 -11.69 10.46 84.03 0.88 -10.81 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 10 N -0.98 -60.75 13.97 21.65 0.30 -60.45 16 11 Si 0.94 44.71 27.73 68.60 1.90 46.61 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 15 C -0.15 -3.95 6.76 31.99 0.22 -3.73 16 16 C 0.10 1.74 5.24 86.86 0.46 2.20 16 17 N -0.60 -14.63 3.07 -791.93 -2.43 -17.06 16 18 C 0.57 15.05 6.97 86.65 0.60 15.66 16 19 O -0.56 -18.72 13.95 -4.05 -0.06 -18.78 16 20 C -0.12 -2.47 5.55 -18.70 -0.10 -2.57 16 21 C -0.04 -0.51 7.97 22.56 0.18 -0.33 16 22 C -0.12 -1.25 9.90 22.21 0.22 -1.03 16 23 C 0.12 1.74 7.28 22.67 0.17 1.91 16 24 F -0.12 -1.69 16.72 44.97 0.75 -0.94 16 25 C -0.07 -1.25 5.75 -21.27 -0.12 -1.38 16 26 C -0.14 -2.23 9.70 22.39 0.22 -2.01 16 27 C 0.07 1.28 11.07 84.15 0.93 2.21 16 28 N -0.50 -12.53 10.30 -195.77 -2.02 -14.55 16 29 C 0.13 3.50 10.50 85.19 0.89 4.39 16 30 C -0.07 -1.56 5.90 -19.99 -0.12 -1.67 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.06 1.76 6.74 -2.39 -0.02 1.74 16 34 H 0.36 15.68 5.38 -92.71 -0.50 15.18 16 35 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.11 1.26 7.34 -2.39 -0.02 1.24 16 39 H 0.10 1.38 6.78 -2.39 -0.02 1.37 16 40 H 0.18 1.27 5.95 -2.91 -0.02 1.25 16 41 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 42 H 0.17 1.65 7.81 -2.91 -0.02 1.63 16 43 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.16 4.64 6.19 -2.91 -0.02 4.62 16 Total: -1.00 -72.38 362.30 3.18 -69.20 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.50 Total: 23.32 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.83 Total: 6.35 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -5.75 Total: -125.76 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.75 Total: -0.94 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Total: -72.38 3.18 -69.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986693557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.503 kcal (2) G-P(sol) polarization free energy of solvation -72.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds