Wall clock time and date at job start Wed Apr 1 2020 02:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.99879 * 2 1 4 4 C 1.54320 * 109.88508 * 121.10248 * 2 1 3 5 5 H 1.08999 * 110.87078 * 260.03937 * 4 2 1 6 6 N 1.46494 * 110.71879 * 23.24391 * 4 2 1 7 7 C 1.36940 * 120.00018 * 195.39810 * 6 4 2 8 8 H 1.08003 * 119.99829 * 359.97438 * 7 6 4 9 9 C 1.38806 * 120.00234 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00223 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00090 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47200 * 270.00015 * 11 9 7 13 13 H 1.48497 * 109.47627 * 150.00108 * 11 9 7 14 14 H 1.48496 * 109.47188 * 29.99641 * 11 9 7 15 15 C 1.55160 * 102.94408 * 141.60816 * 4 2 1 16 16 C 1.54910 * 101.57790 * 324.49659 * 15 4 2 17 17 N 1.47021 * 109.87753 * 238.90987 * 2 1 3 18 18 C 1.34780 * 125.65117 * 61.60077 * 17 2 1 19 19 O 1.21612 * 119.99843 * 5.68408 * 18 17 2 20 20 C 1.47399 * 119.99937 * 185.69413 * 18 17 2 21 21 C 1.38944 * 120.65570 * 35.50151 * 20 18 17 22 22 C 1.38742 * 120.72857 * 179.72044 * 21 20 18 23 23 C 1.37489 * 121.68016 * 0.56535 * 22 21 20 24 24 F 1.35102 * 119.85551 * 179.74187 * 23 22 21 25 25 C 1.40589 * 120.29536 * 359.72274 * 23 22 21 26 26 C 1.40585 * 122.25057 * 180.02562 * 25 23 22 27 27 C 1.36312 * 118.65092 * 180.02562 * 26 25 23 28 28 N 1.32481 * 121.87508 * 359.95593 * 27 26 25 29 29 C 1.31370 * 122.69310 * 0.02562 * 28 27 26 30 30 C 1.40021 * 119.84218 * 359.97438 * 29 28 27 31 31 H 1.09012 * 109.46760 * 293.45283 * 1 2 3 32 32 H 1.09001 * 109.47345 * 53.44554 * 1 2 3 33 33 H 1.08997 * 109.47597 * 173.45688 * 1 2 3 34 34 H 0.96995 * 120.00413 * 15.39439 * 6 4 2 35 35 H 0.97001 * 120.00368 * 180.02562 * 10 9 7 36 36 H 1.09002 * 111.00272 * 82.57051 * 15 4 2 37 37 H 1.09003 * 111.00459 * 206.42341 * 15 4 2 38 38 H 1.09001 * 110.36324 * 155.84513 * 16 15 4 39 39 H 1.08994 * 110.37010 * 278.05764 * 16 15 4 40 40 H 1.08003 * 119.63941 * 359.97192 * 21 20 18 41 41 H 1.08003 * 119.15753 * 180.26229 * 22 21 20 42 42 H 1.08010 * 120.67530 * 359.97438 * 26 25 23 43 43 H 1.07998 * 119.06007 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.07685 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 1 2.3526 -0.0484 2.0221 6 7 1.0473 -1.6856 1.7472 7 6 1.1727 -2.2147 3.0040 8 1 2.0147 -1.9422 3.6231 9 6 0.2177 -3.1011 3.4824 10 7 0.3380 -3.6092 4.6906 11 14 -1.2383 -3.5730 2.4116 12 1 -2.3568 -2.6261 2.6516 13 1 -1.6756 -4.9513 2.7497 14 1 -0.8403 -3.5166 0.9821 15 6 3.2877 -1.5143 0.6921 16 6 2.8144 -1.8794 -0.7370 17 7 2.0299 -0.7140 -1.1840 18 6 1.8071 -0.3619 -2.4658 19 8 1.2302 0.6782 -2.7192 20 6 2.2626 -1.2376 -3.5604 21 6 2.2325 -2.6198 -3.4212 22 6 2.6555 -3.4456 -4.4527 23 6 3.1279 -2.9353 -5.6388 24 9 3.5352 -3.7735 -6.6169 25 6 3.1886 -1.5450 -5.8385 26 6 3.6637 -0.9789 -7.0345 27 6 3.6911 0.3791 -7.1491 28 7 3.2835 1.1722 -6.1694 29 6 2.8280 0.7117 -5.0265 30 6 2.7596 -0.6700 -4.8096 31 1 -0.3633 0.4091 0.9429 32 1 -0.3634 0.6121 -0.8255 33 1 -0.3634 -1.0209 -0.1171 34 1 0.2912 -1.9306 1.1912 35 1 -0.3292 -4.2290 5.0248 36 1 4.1655 -0.8689 0.6601 37 1 3.4853 -2.4112 1.2793 38 1 3.6715 -2.0337 -1.3926 39 1 2.1901 -2.7725 -0.7134 40 1 1.8721 -3.0562 -2.5014 41 1 2.6172 -4.5166 -4.3187 42 1 4.0008 -1.6073 -7.8457 43 1 4.0551 0.8210 -8.0648 44 1 2.5063 1.3970 -4.2563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986693561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:42 Heat of formation + Delta-G solvation = 9.612190 kcal Electronic energy + Delta-G solvation = -29938.911037 eV Core-core repulsion = 25771.643725 eV Total energy + Delta-G solvation = -4167.267312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.44735 -41.21422 -40.04314 -37.85720 -37.24726 -34.27879 -33.08724 -31.86568 -31.60031 -31.10309 -30.21939 -29.01193 -25.71638 -25.10760 -24.14020 -23.84266 -23.23021 -22.14624 -20.10612 -19.28307 -18.68624 -18.07071 -17.96722 -17.62372 -16.70804 -16.45845 -16.15959 -15.67505 -15.38692 -15.13743 -14.83589 -14.52775 -14.34456 -14.13157 -13.89444 -13.69610 -13.58764 -13.45028 -12.94644 -12.84372 -12.56783 -12.50049 -12.22022 -11.96576 -11.90011 -11.64047 -11.33023 -11.20644 -10.91742 -10.80447 -10.49657 -10.36588 -10.19889 -9.96536 -9.80122 -9.65861 -9.62158 -9.06192 -8.65439 -8.36697 -7.41823 -5.89113 -3.26182 -0.34859 0.38631 1.17411 2.26039 2.76457 2.92754 3.25532 3.30089 3.36820 3.53080 3.60857 4.03741 4.05892 4.20979 4.24718 4.38810 4.47026 4.48803 4.82951 4.85112 4.92211 5.06384 5.11086 5.23364 5.26670 5.33834 5.38886 5.45146 5.49100 5.55067 5.56670 5.61624 5.68019 5.70736 5.83168 6.05522 6.15069 6.17533 6.24918 6.27968 6.37845 6.50985 6.54984 6.66893 7.48271 7.61904 7.86334 8.02658 8.29662 9.07040 9.79157 9.97703 11.28760 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.003095 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.996556 B = 9045.203786 C = 9840.802526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 H 0.082 0.918 4 C 0.178 3.822 5 H 0.076 0.924 6 N -0.741 5.741 7 C -0.248 4.248 8 H 0.093 0.907 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.879 3.121 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.279 1.279 15 C -0.157 4.157 16 C 0.097 3.903 17 N -0.600 5.600 18 C 0.573 3.427 19 O -0.533 6.533 20 C -0.098 4.098 21 C -0.060 4.060 22 C -0.135 4.135 23 C 0.121 3.879 24 F -0.127 7.127 25 C -0.054 4.054 26 C -0.153 4.153 27 C 0.083 3.917 28 N -0.479 5.479 29 C 0.157 3.843 30 C -0.058 4.058 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.365 0.635 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.158 0.842 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 2.892 -21.435 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.100 0.900 4 C 0.067 3.933 5 H 0.094 0.906 6 N -0.386 5.386 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.576 5.576 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.206 1.206 15 C -0.198 4.198 16 C -0.025 4.025 17 N -0.332 5.332 18 C 0.362 3.638 19 O -0.412 6.412 20 C -0.104 4.104 21 C -0.079 4.079 22 C -0.155 4.155 23 C 0.101 3.899 24 F -0.105 7.105 25 C -0.061 4.061 26 C -0.173 4.173 27 C -0.061 4.061 28 N -0.187 5.187 29 C -0.012 4.012 30 C -0.061 4.061 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.201 0.799 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.176 0.824 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.642 4.257 -21.680 23.379 hybrid contribution -1.048 -1.914 -0.806 2.326 sum 6.594 2.343 -22.486 23.550 Atomic orbital electron populations 1.22013 0.94591 1.02073 1.02838 1.22005 0.95049 0.96321 0.84201 0.89967 1.21178 0.88781 0.91358 0.92022 0.90592 1.42931 1.26228 1.52891 1.16502 1.19023 1.08361 1.20512 0.89842 0.88950 1.24643 0.98376 0.99388 0.96213 1.69685 1.36665 1.34789 1.16494 0.86665 0.84187 0.78165 0.80066 1.20868 1.21628 1.20562 1.23486 0.99159 1.02891 0.94291 1.22559 0.94551 0.88441 0.96956 1.48603 1.51327 1.28698 1.04587 1.17498 0.79832 0.85233 0.81245 1.90768 1.42881 1.24320 1.83196 1.20945 1.02057 0.93717 0.93643 1.21513 0.95517 0.91787 0.99100 1.21046 1.00593 1.01967 0.91913 1.17608 0.99358 0.86264 0.86656 1.91523 1.87722 1.70365 1.60928 1.18005 1.00859 0.91793 0.95406 1.21838 1.01264 0.97122 0.97050 1.22320 0.96059 0.90062 0.97705 1.67623 1.09573 1.40594 1.00934 1.23655 0.90980 0.92112 0.94480 1.19516 0.99229 0.94967 0.92398 0.90558 0.92074 0.92620 0.79926 0.92908 0.91473 0.88671 0.91073 0.90903 0.83139 0.83410 0.83860 0.82437 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.16 37.16 0.30 -2.19 16 2 C 0.13 1.90 3.41 -66.96 -0.23 1.67 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.18 2.94 3.46 -66.10 -0.23 2.71 16 5 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 6 N -0.74 -15.41 4.58 -51.66 -0.24 -15.65 16 7 C -0.25 -6.32 10.42 -15.06 -0.16 -6.48 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 9 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 10 N -0.93 -27.63 13.97 55.49 0.78 -26.86 16 11 Si 0.88 20.83 27.73 -169.99 -4.71 16.12 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 15 C -0.16 -2.22 6.74 -24.58 -0.17 -2.38 16 16 C 0.10 1.22 5.18 -2.53 -0.01 1.21 16 17 N -0.60 -8.29 3.06 -164.28 -0.50 -8.80 16 18 C 0.57 8.14 7.04 -12.53 -0.09 8.06 16 19 O -0.53 -8.75 14.08 5.27 0.07 -8.67 16 20 C -0.10 -1.20 5.59 -102.83 -0.57 -1.78 16 21 C -0.06 -0.62 8.18 -39.13 -0.32 -0.94 16 22 C -0.14 -1.22 9.90 -39.67 -0.39 -1.61 16 23 C 0.12 1.20 7.28 -38.97 -0.28 0.92 16 24 F -0.13 -1.23 16.72 2.25 0.04 -1.19 16 25 C -0.05 -0.59 5.75 -106.80 -0.61 -1.21 16 26 C -0.15 -1.43 9.70 -39.39 -0.38 -1.81 16 27 C 0.08 0.80 11.07 -17.97 -0.20 0.60 16 28 N -0.48 -5.88 10.30 -13.23 -0.14 -6.02 16 29 C 0.16 2.00 10.48 -17.08 -0.18 1.82 16 30 C -0.06 -0.71 5.89 -104.82 -0.62 -1.33 16 31 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.06 0.96 7.26 -51.93 -0.38 0.58 16 33 H 0.05 0.94 6.51 -51.93 -0.34 0.61 16 34 H 0.37 7.65 3.28 -40.82 -0.13 7.51 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 38 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 39 H 0.07 0.94 6.90 -51.93 -0.36 0.58 16 40 H 0.15 1.44 5.68 -52.48 -0.30 1.14 16 41 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.14 0.99 7.81 -52.48 -0.41 0.58 16 43 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.18 2.41 5.98 -52.49 -0.31 2.10 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -30.57 358.77 -8.69 -39.26 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.16 Total: 8.94 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -4.24 Total: -2.54 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.10 Total: -57.32 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.67 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.57 -8.69 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986693561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.875 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds