Wall clock time and date at job start Wed Apr 1 2020 02:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.99879 * 2 1 4 4 C 1.54320 * 109.88508 * 121.10248 * 2 1 3 5 5 H 1.08999 * 110.87078 * 260.03937 * 4 2 1 6 6 N 1.46494 * 110.71879 * 23.24391 * 4 2 1 7 7 C 1.36940 * 120.00018 * 195.39810 * 6 4 2 8 8 H 1.08003 * 119.99829 * 359.97438 * 7 6 4 9 9 C 1.38806 * 120.00234 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00223 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00090 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47200 * 270.00015 * 11 9 7 13 13 H 1.48497 * 109.47627 * 150.00108 * 11 9 7 14 14 H 1.48496 * 109.47188 * 29.99641 * 11 9 7 15 15 C 1.55160 * 102.94408 * 141.60816 * 4 2 1 16 16 C 1.54910 * 101.57790 * 324.49659 * 15 4 2 17 17 N 1.47021 * 109.87753 * 238.90987 * 2 1 3 18 18 C 1.34780 * 125.65117 * 61.60077 * 17 2 1 19 19 O 1.21612 * 119.99843 * 5.68408 * 18 17 2 20 20 C 1.47399 * 119.99937 * 185.69413 * 18 17 2 21 21 C 1.38944 * 120.65570 * 35.50151 * 20 18 17 22 22 C 1.38742 * 120.72857 * 179.72044 * 21 20 18 23 23 C 1.37489 * 121.68016 * 0.56535 * 22 21 20 24 24 F 1.35102 * 119.85551 * 179.74187 * 23 22 21 25 25 C 1.40589 * 120.29536 * 359.72274 * 23 22 21 26 26 C 1.40585 * 122.25057 * 180.02562 * 25 23 22 27 27 C 1.36312 * 118.65092 * 180.02562 * 26 25 23 28 28 N 1.32481 * 121.87508 * 359.95593 * 27 26 25 29 29 C 1.31370 * 122.69310 * 0.02562 * 28 27 26 30 30 C 1.40021 * 119.84218 * 359.97438 * 29 28 27 31 31 H 1.09012 * 109.46760 * 293.45283 * 1 2 3 32 32 H 1.09001 * 109.47345 * 53.44554 * 1 2 3 33 33 H 1.08997 * 109.47597 * 173.45688 * 1 2 3 34 34 H 0.96995 * 120.00413 * 15.39439 * 6 4 2 35 35 H 0.97001 * 120.00368 * 180.02562 * 10 9 7 36 36 H 1.09002 * 111.00272 * 82.57051 * 15 4 2 37 37 H 1.09003 * 111.00459 * 206.42341 * 15 4 2 38 38 H 1.09001 * 110.36324 * 155.84513 * 16 15 4 39 39 H 1.08994 * 110.37010 * 278.05764 * 16 15 4 40 40 H 1.08003 * 119.63941 * 359.97192 * 21 20 18 41 41 H 1.08003 * 119.15753 * 180.26229 * 22 21 20 42 42 H 1.08010 * 120.67530 * 359.97438 * 26 25 23 43 43 H 1.07998 * 119.06007 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.07685 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 1 2.3526 -0.0484 2.0221 6 7 1.0473 -1.6856 1.7472 7 6 1.1727 -2.2147 3.0040 8 1 2.0147 -1.9422 3.6231 9 6 0.2177 -3.1011 3.4824 10 7 0.3380 -3.6092 4.6906 11 14 -1.2383 -3.5730 2.4116 12 1 -2.3568 -2.6261 2.6516 13 1 -1.6756 -4.9513 2.7497 14 1 -0.8403 -3.5166 0.9821 15 6 3.2877 -1.5143 0.6921 16 6 2.8144 -1.8794 -0.7370 17 7 2.0299 -0.7140 -1.1840 18 6 1.8071 -0.3619 -2.4658 19 8 1.2302 0.6782 -2.7192 20 6 2.2626 -1.2376 -3.5604 21 6 2.2325 -2.6198 -3.4212 22 6 2.6555 -3.4456 -4.4527 23 6 3.1279 -2.9353 -5.6388 24 9 3.5352 -3.7735 -6.6169 25 6 3.1886 -1.5450 -5.8385 26 6 3.6637 -0.9789 -7.0345 27 6 3.6911 0.3791 -7.1491 28 7 3.2835 1.1722 -6.1694 29 6 2.8280 0.7117 -5.0265 30 6 2.7596 -0.6700 -4.8096 31 1 -0.3633 0.4091 0.9429 32 1 -0.3634 0.6121 -0.8255 33 1 -0.3634 -1.0209 -0.1171 34 1 0.2912 -1.9306 1.1912 35 1 -0.3292 -4.2290 5.0248 36 1 4.1655 -0.8689 0.6601 37 1 3.4853 -2.4112 1.2793 38 1 3.6715 -2.0337 -1.3926 39 1 2.1901 -2.7725 -0.7134 40 1 1.8721 -3.0562 -2.5014 41 1 2.6172 -4.5166 -4.3187 42 1 4.0008 -1.6073 -7.8457 43 1 4.0551 0.8210 -8.0648 44 1 2.5063 1.3970 -4.2563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986693561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:41 Heat of formation + Delta-G solvation = -8.213117 kcal Electronic energy + Delta-G solvation = -29939.684000 eV Core-core repulsion = 25771.643725 eV Total energy + Delta-G solvation = -4168.040275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.19312 -42.11121 -41.09299 -39.03292 -38.11757 -35.87674 -34.05911 -33.43641 -32.40810 -32.31921 -31.48399 -30.15861 -26.99716 -26.00346 -25.27574 -24.84586 -24.62605 -23.16952 -21.31301 -20.41559 -19.78481 -19.55910 -18.86286 -18.58642 -17.80529 -17.46213 -16.91780 -16.73667 -16.42523 -16.17046 -16.04213 -15.84039 -15.36030 -15.17124 -15.01628 -14.91432 -14.61258 -14.59589 -14.29662 -13.95429 -13.84052 -13.46040 -13.35425 -13.26211 -12.99845 -12.92232 -12.68225 -12.55801 -12.44280 -12.24443 -11.93427 -11.67702 -11.59182 -11.26271 -11.03166 -10.96132 -10.65866 -10.41693 -9.76887 -9.29162 -9.16377 -7.98433 -5.31264 -1.16305 -0.39149 0.34542 1.36866 1.39330 1.41043 1.47213 1.73546 1.95666 2.49739 2.75004 2.79029 3.16400 3.27040 3.32155 3.40825 3.45362 3.56191 3.61287 3.66883 3.73371 3.84184 4.17083 4.20263 4.24186 4.26102 4.31547 4.44778 4.49670 4.56888 4.61312 4.70421 4.74712 4.82673 4.85246 4.89571 4.94231 5.03222 5.18706 5.23737 5.31845 5.37411 5.42346 5.51967 5.83990 6.25033 6.40246 6.80677 6.95098 7.11477 7.86560 8.04666 9.22901 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.003095 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.996556 B = 9045.203786 C = 9840.802526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.091 0.909 4 C 0.168 3.832 5 H 0.073 0.927 6 N -0.742 5.742 7 C -0.218 4.218 8 H 0.066 0.934 9 C -0.058 4.058 10 N -0.982 5.982 11 Si 0.939 3.061 12 H -0.285 1.285 13 H -0.299 1.299 14 H -0.252 1.252 15 C -0.148 4.148 16 C 0.101 3.899 17 N -0.599 5.599 18 C 0.574 3.426 19 O -0.562 6.562 20 C -0.119 4.119 21 C -0.046 4.046 22 C -0.129 4.129 23 C 0.126 3.874 24 F -0.123 7.123 25 C -0.068 4.068 26 C -0.143 4.143 27 C 0.074 3.926 28 N -0.497 5.497 29 C 0.137 3.863 30 C -0.066 4.066 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.367 0.633 35 H 0.256 0.744 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.171 0.829 43 H 0.189 0.811 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.645 1.936 -24.559 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.109 0.891 4 C 0.059 3.941 5 H 0.091 0.909 6 N -0.387 5.387 7 C -0.349 4.349 8 H 0.084 0.916 9 C -0.249 4.249 10 N -0.633 5.633 11 Si 0.767 3.233 12 H -0.212 1.212 13 H -0.226 1.226 14 H -0.177 1.177 15 C -0.189 4.189 16 C -0.021 4.021 17 N -0.331 5.331 18 C 0.365 3.635 19 O -0.442 6.442 20 C -0.124 4.124 21 C -0.065 4.065 22 C -0.149 4.149 23 C 0.106 3.894 24 F -0.101 7.101 25 C -0.074 4.074 26 C -0.162 4.162 27 C -0.070 4.070 28 N -0.206 5.206 29 C -0.032 4.032 30 C -0.069 4.069 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.203 0.797 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.178 0.822 41 H 0.195 0.805 42 H 0.189 0.811 43 H 0.206 0.794 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.523 3.330 -24.857 26.488 hybrid contribution -1.186 -1.543 0.082 1.948 sum 7.337 1.787 -24.775 25.901 Atomic orbital electron populations 1.21937 0.95246 1.01278 1.02498 1.21833 0.94465 0.96660 0.84024 0.89066 1.21365 0.88983 0.91018 0.92723 0.90925 1.42880 1.27460 1.53367 1.14977 1.18979 1.06385 1.18608 0.90885 0.91630 1.25320 1.01549 1.00564 0.97491 1.69851 1.38030 1.36618 1.18794 0.85666 0.80719 0.76985 0.79892 1.21152 1.22584 1.17676 1.23346 0.98588 1.02107 0.94826 1.22619 0.95347 0.87822 0.96302 1.48576 1.51416 1.28895 1.04245 1.17796 0.79172 0.85055 0.81511 1.90753 1.44161 1.25715 1.83587 1.20760 1.04192 0.94220 0.93207 1.21645 0.94239 0.90913 0.99709 1.21296 0.99381 1.03251 0.90951 1.17649 0.98898 0.85883 0.86978 1.91540 1.87604 1.70123 1.60826 1.18218 1.01169 0.92303 0.95694 1.22179 0.99692 0.97301 0.97044 1.22835 0.95707 0.90423 0.98050 1.67589 1.09863 1.41768 1.01336 1.23444 0.92553 0.92455 0.94757 1.19514 0.99707 0.94851 0.92868 0.91102 0.92130 0.93583 0.79724 0.93517 0.89214 0.90257 0.88316 0.90790 0.82210 0.80530 0.81130 0.79393 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 8.16 71.98 0.59 -4.07 16 2 C 0.13 3.82 3.41 45.34 0.15 3.98 16 3 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 4 C 0.17 5.38 3.46 46.18 0.16 5.54 16 5 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 6 N -0.74 -30.20 4.58 -317.34 -1.45 -31.65 16 7 C -0.22 -11.17 10.42 84.03 0.88 -10.29 16 8 H 0.07 3.68 8.06 -2.91 -0.02 3.66 16 9 C -0.06 -3.18 5.50 84.86 0.47 -2.72 16 10 N -0.98 -60.00 13.97 21.65 0.30 -59.69 16 11 Si 0.94 43.00 27.73 68.60 1.90 44.91 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 14 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 15 C -0.15 -3.89 6.74 31.99 0.22 -3.67 16 16 C 0.10 2.26 5.18 86.86 0.45 2.71 16 17 N -0.60 -15.50 3.06 -791.92 -2.43 -17.93 16 18 C 0.57 15.68 7.04 86.66 0.61 16.29 16 19 O -0.56 -18.41 14.08 -4.07 -0.06 -18.47 16 20 C -0.12 -2.70 5.59 -18.70 -0.10 -2.80 16 21 C -0.05 -0.81 8.18 22.56 0.18 -0.62 16 22 C -0.13 -1.83 9.90 22.21 0.22 -1.61 16 23 C 0.13 2.08 7.28 22.67 0.17 2.24 16 24 F -0.12 -1.92 16.72 44.97 0.75 -1.16 16 25 C -0.07 -1.31 5.75 -21.28 -0.12 -1.43 16 26 C -0.14 -2.26 9.70 22.39 0.22 -2.04 16 27 C 0.07 1.28 11.07 84.15 0.93 2.21 16 28 N -0.50 -11.85 10.30 -195.77 -2.02 -13.87 16 29 C 0.14 3.47 10.48 85.19 0.89 4.36 16 30 C -0.07 -1.54 5.89 -19.99 -0.12 -1.66 16 31 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.06 1.87 7.26 -2.39 -0.02 1.85 16 33 H 0.05 1.49 6.51 -2.39 -0.02 1.47 16 34 H 0.37 14.78 3.28 -92.71 -0.30 14.48 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.39 8.12 -2.39 -0.02 2.37 16 38 H 0.10 1.71 7.27 -2.39 -0.02 1.70 16 39 H 0.07 1.68 6.90 -2.39 -0.02 1.66 16 40 H 0.16 2.48 5.68 -2.91 -0.02 2.46 16 41 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.17 1.69 7.81 -2.91 -0.02 1.66 16 43 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.17 4.61 5.98 -2.91 -0.02 4.59 16 Total: -1.00 -67.73 358.77 3.49 -64.24 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.70 Total: 27.21 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.78 Total: 6.41 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.59 Total: -123.14 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.06 Total: -18.47 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.75 Total: -1.16 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.90 Total: 44.91 kcal Total: -67.73 3.49 -64.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986693561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.026 kcal (2) G-P(sol) polarization free energy of solvation -67.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds