Wall clock time and date at job start Wed Apr 1 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.99685 * 2 1 4 4 C 1.54332 * 109.99577 * 238.96460 * 2 1 3 5 5 H 1.08993 * 110.85562 * 100.19715 * 4 2 1 6 6 N 1.46499 * 110.66438 * 337.04601 * 4 2 1 7 7 C 1.36942 * 120.00197 * 96.32516 * 6 4 2 8 8 H 1.07994 * 119.99438 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00052 * 180.02562 * 7 6 4 10 10 N 1.31611 * 120.00265 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99713 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46961 * 89.99874 * 11 9 7 13 13 H 1.48497 * 109.47003 * 209.99644 * 11 9 7 14 14 H 1.48496 * 109.47246 * 329.99815 * 11 9 7 15 15 C 1.55155 * 103.02039 * 218.66890 * 4 2 1 16 16 C 1.54912 * 101.58494 * 35.30162 * 15 4 2 17 17 N 1.47020 * 109.88314 * 121.09260 * 2 1 3 18 18 C 1.34775 * 125.64851 * 298.40248 * 17 2 1 19 19 O 1.21597 * 120.00193 * 3.70480 * 18 17 2 20 20 C 1.47449 * 119.99851 * 183.70779 * 18 17 2 21 21 C 1.38708 * 120.31712 * 324.10217 * 20 18 17 22 22 C 1.39099 * 120.69580 * 180.02562 * 21 20 18 23 23 F 1.35099 * 119.50420 * 180.02562 * 22 21 20 24 24 C 1.36547 * 121.00427 * 0.02562 * 22 21 20 25 25 C 1.40410 * 120.06907 * 359.95825 * 24 22 21 26 26 C 1.40814 * 121.24378 * 180.02562 * 25 24 22 27 27 C 1.36637 * 118.15538 * 180.27067 * 26 25 24 28 28 C 1.39235 * 119.90996 * 359.54286 * 27 26 25 29 29 N 1.31231 * 121.69399 * 0.45398 * 28 27 26 30 30 C 1.33354 * 121.35559 * 359.78545 * 29 28 27 31 31 H 1.08998 * 109.47428 * 295.53502 * 1 2 3 32 32 H 1.09000 * 109.47268 * 55.53792 * 1 2 3 33 33 H 1.09002 * 109.47116 * 175.53123 * 1 2 3 34 34 H 0.97001 * 120.00411 * 276.32103 * 6 4 2 35 35 H 0.96997 * 120.00100 * 180.02562 * 10 9 7 36 36 H 1.09005 * 110.99999 * 277.22867 * 15 4 2 37 37 H 1.08997 * 111.00760 * 153.37930 * 15 4 2 38 38 H 1.09000 * 110.36808 * 204.15450 * 16 15 4 39 39 H 1.08996 * 110.36395 * 81.83493 * 16 15 4 40 40 H 1.07998 * 119.65428 * 0.04584 * 21 20 18 41 41 H 1.07991 * 119.96399 * 180.02562 * 24 22 21 42 42 H 1.07997 * 120.92397 * 359.97438 * 26 25 24 43 43 H 1.07996 * 120.03886 * 179.75035 * 27 26 25 44 44 H 1.08003 * 119.15513 * 180.21136 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2427 5 1 2.3598 -0.0450 -2.0191 6 7 1.0484 -1.6788 -1.7532 7 6 0.2263 -1.3013 -2.7813 8 1 0.3219 -0.3171 -3.2155 9 6 -0.7304 -2.1834 -3.2646 10 7 -0.8472 -3.3826 -2.7351 11 14 -1.8522 -1.6681 -4.6666 12 1 -1.2232 -2.0298 -5.9624 13 1 -3.1571 -2.3652 -4.5382 14 1 -2.0680 -0.1999 -4.6139 15 6 3.2863 -1.5183 -0.6914 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7140 1.1839 18 6 1.8072 -0.3620 2.4657 19 8 1.0861 0.5834 2.7201 20 6 2.4381 -1.1233 3.5596 21 6 2.6072 -2.4957 3.4507 22 6 3.2008 -3.2218 4.4780 23 9 3.3540 -4.5575 4.3463 24 6 3.6311 -2.6049 5.6176 25 6 3.4787 -1.2171 5.7669 26 6 3.9139 -0.5556 6.9313 27 6 3.7293 0.7958 7.0123 28 6 3.1337 1.4797 5.9558 29 7 2.7301 0.8585 4.8726 30 6 2.8768 -0.4596 4.7331 31 1 -0.3634 0.4430 0.9272 32 1 -0.3634 0.5815 -0.8473 33 1 -0.3633 -1.0246 -0.0801 34 1 0.9623 -2.5627 -1.3630 35 1 -1.5154 -3.9990 -3.0731 36 1 4.1669 -0.8767 -0.6578 37 1 3.4807 -2.4155 -1.2790 38 1 3.6655 -2.0411 1.3934 39 1 2.1802 -2.7718 0.7115 40 1 2.2747 -3.0060 2.5588 41 1 4.0901 -3.1849 6.4045 42 1 4.3764 -1.1019 7.7400 43 1 4.0479 1.3332 7.8932 44 1 2.9968 2.5484 6.0313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987105614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:47 Heat of formation + Delta-G solvation = 9.756589 kcal Electronic energy + Delta-G solvation = -29960.611076 eV Core-core repulsion = 25793.350026 eV Total energy + Delta-G solvation = -4167.261051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.20645 -41.23489 -39.73608 -37.42884 -36.86276 -34.07586 -33.72582 -31.75004 -30.88433 -30.52202 -30.14992 -28.61062 -25.52745 -24.86615 -23.98079 -23.68924 -23.28291 -21.97543 -20.07018 -19.23148 -18.58926 -17.68734 -17.53209 -17.24091 -16.53000 -16.06114 -15.86215 -15.76839 -15.16740 -14.73550 -14.59852 -14.39997 -14.24671 -13.83767 -13.67183 -13.50974 -13.39265 -13.26989 -12.85025 -12.78071 -12.49821 -12.35447 -11.81196 -11.64264 -11.48412 -11.31691 -10.90597 -10.85348 -10.83899 -10.61876 -10.44076 -10.12210 -10.04654 -9.84683 -9.66987 -9.31869 -9.06217 -8.95793 -8.56296 -8.19532 -7.04268 -5.82249 -3.11568 -0.18858 0.39682 1.46105 2.32751 3.09816 3.22496 3.41622 3.47999 3.48878 3.74958 3.86564 3.98500 4.16908 4.35158 4.53026 4.53888 4.55017 4.62446 4.87593 4.94648 5.01743 5.20563 5.29091 5.34960 5.42753 5.55295 5.58301 5.59867 5.65882 5.69836 5.76311 5.84041 5.86936 6.10139 6.13944 6.24908 6.28728 6.41572 6.45905 6.57851 6.68324 6.89110 7.06965 7.41420 7.66821 7.70090 7.89131 8.35047 8.50080 9.47419 10.00583 10.35920 11.39815 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002975 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.559825 B = 9409.818407 C =10302.510719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.112 3.888 3 H 0.061 0.939 4 C 0.170 3.830 5 H 0.076 0.924 6 N -0.708 5.708 7 C -0.239 4.239 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.145 4.145 16 C 0.095 3.905 17 N -0.599 5.599 18 C 0.570 3.430 19 O -0.506 6.506 20 C -0.059 4.059 21 C -0.109 4.109 22 C 0.105 3.895 23 F -0.131 7.131 24 C -0.122 4.122 25 C -0.086 4.086 26 C -0.060 4.060 27 C -0.167 4.167 28 C 0.130 3.870 29 N -0.440 5.440 30 C 0.150 3.850 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.995 3.171 19.907 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.007 3.993 3 H 0.079 0.921 4 C 0.058 3.942 5 H 0.094 0.906 6 N -0.347 5.347 7 C -0.370 4.370 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.185 4.185 16 C -0.028 4.028 17 N -0.333 5.333 18 C 0.357 3.643 19 O -0.381 6.381 20 C -0.063 4.063 21 C -0.130 4.130 22 C 0.086 3.914 23 F -0.110 7.110 24 C -0.142 4.142 25 C -0.088 4.088 26 C -0.086 4.086 27 C -0.187 4.187 28 C -0.042 4.042 29 N -0.147 5.147 30 C 0.027 3.973 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.175 0.825 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.046 4.118 19.163 23.545 hybrid contribution -0.267 -0.932 0.168 0.983 sum 12.779 3.186 19.330 23.391 Atomic orbital electron populations 1.21827 0.93644 1.03859 1.00292 1.22741 0.96285 0.95371 0.84948 0.92114 1.21258 0.88422 0.92255 0.92301 0.90605 1.42342 1.38026 1.14493 1.39846 1.19196 1.10513 0.98719 1.08591 0.91031 1.24717 0.99723 0.96193 0.99899 1.69643 1.37387 1.06633 1.44147 0.86222 0.80276 0.77701 0.82181 1.21745 1.21839 1.20690 1.23172 0.98692 1.01896 0.94706 1.22544 0.94712 0.89132 0.96422 1.48520 1.51837 1.28176 1.04809 1.17329 0.81865 0.84098 0.80994 1.90803 1.36590 1.28042 1.82700 1.19826 0.99422 0.92599 0.94499 1.21796 0.97989 0.93564 0.99639 1.17156 1.01058 0.77870 0.95336 1.91557 1.93551 1.29726 1.96120 1.21007 1.01681 0.93873 0.97604 1.18477 1.00947 0.93606 0.95763 1.21415 0.96471 0.94775 0.95950 1.21980 1.00811 0.95182 1.00739 1.23161 0.91940 1.00861 0.88248 1.68183 1.14581 1.08184 1.23718 1.18575 0.96306 0.89967 0.92469 0.93781 0.92075 0.90751 0.78092 0.93453 0.90972 0.89375 0.91351 0.90939 0.82465 0.83640 0.83980 0.84167 0.82062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.20 37.15 0.30 -2.61 16 2 C 0.11 2.09 3.46 -66.95 -0.23 1.86 16 3 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.17 3.14 3.53 -66.09 -0.23 2.91 16 5 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 6 N -0.71 -16.20 3.64 -51.65 -0.19 -16.39 16 7 C -0.24 -6.19 8.81 -15.06 -0.13 -6.32 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 11 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C -0.15 -2.14 6.70 -24.58 -0.16 -2.31 16 16 C 0.09 1.37 5.06 -2.53 -0.01 1.35 16 17 N -0.60 -10.27 3.06 -164.26 -0.50 -10.77 16 18 C 0.57 10.34 7.21 -12.51 -0.09 10.25 16 19 O -0.51 -10.81 14.83 5.28 0.08 -10.73 16 20 C -0.06 -0.90 5.55 -104.62 -0.58 -1.48 16 21 C -0.11 -1.39 7.86 -39.09 -0.31 -1.70 16 22 C 0.11 1.17 7.22 -39.87 -0.29 0.88 16 23 F -0.13 -1.47 17.24 2.25 0.04 -1.44 16 24 C -0.12 -1.15 9.71 -39.38 -0.38 -1.53 16 25 C -0.09 -0.92 5.74 -106.83 -0.61 -1.53 16 26 C -0.06 -0.46 9.89 -39.19 -0.39 -0.85 16 27 C -0.17 -1.23 10.03 -39.79 -0.40 -1.62 16 28 C 0.13 1.33 11.15 -17.44 -0.19 1.13 16 29 N -0.44 -6.48 9.01 -10.76 -0.10 -6.57 16 30 C 0.15 2.13 6.58 -84.57 -0.56 1.57 16 31 H 0.04 0.95 6.63 -51.93 -0.34 0.60 16 32 H 0.06 1.32 7.83 -51.93 -0.41 0.91 16 33 H 0.07 1.76 7.06 -51.93 -0.37 1.39 16 34 H 0.38 9.42 7.85 -40.82 -0.32 9.10 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 0.83 6.60 -51.93 -0.34 0.49 16 39 H 0.07 1.07 7.24 -51.93 -0.38 0.70 16 40 H 0.16 1.94 5.39 -52.49 -0.28 1.66 16 41 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -32.74 363.36 -9.22 -41.97 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.36 Total: 8.15 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -4.37 Total: -0.35 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.06 Total: -59.91 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.74 -9.22 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987105614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.724 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds