Wall clock time and date at job start Wed Apr 1 2020 02:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.99685 * 2 1 4 4 C 1.54332 * 109.99577 * 238.96460 * 2 1 3 5 5 H 1.08993 * 110.85562 * 100.19715 * 4 2 1 6 6 N 1.46499 * 110.66438 * 337.04601 * 4 2 1 7 7 C 1.36942 * 120.00197 * 96.32516 * 6 4 2 8 8 H 1.07994 * 119.99438 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00052 * 180.02562 * 7 6 4 10 10 N 1.31611 * 120.00265 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99713 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46961 * 89.99874 * 11 9 7 13 13 H 1.48497 * 109.47003 * 209.99644 * 11 9 7 14 14 H 1.48496 * 109.47246 * 329.99815 * 11 9 7 15 15 C 1.55155 * 103.02039 * 218.66890 * 4 2 1 16 16 C 1.54912 * 101.58494 * 35.30162 * 15 4 2 17 17 N 1.47020 * 109.88314 * 121.09260 * 2 1 3 18 18 C 1.34775 * 125.64851 * 298.40248 * 17 2 1 19 19 O 1.21597 * 120.00193 * 3.70480 * 18 17 2 20 20 C 1.47449 * 119.99851 * 183.70779 * 18 17 2 21 21 C 1.38708 * 120.31712 * 324.10217 * 20 18 17 22 22 C 1.39099 * 120.69580 * 180.02562 * 21 20 18 23 23 F 1.35099 * 119.50420 * 180.02562 * 22 21 20 24 24 C 1.36547 * 121.00427 * 0.02562 * 22 21 20 25 25 C 1.40410 * 120.06907 * 359.95825 * 24 22 21 26 26 C 1.40814 * 121.24378 * 180.02562 * 25 24 22 27 27 C 1.36637 * 118.15538 * 180.27067 * 26 25 24 28 28 C 1.39235 * 119.90996 * 359.54286 * 27 26 25 29 29 N 1.31231 * 121.69399 * 0.45398 * 28 27 26 30 30 C 1.33354 * 121.35559 * 359.78545 * 29 28 27 31 31 H 1.08998 * 109.47428 * 295.53502 * 1 2 3 32 32 H 1.09000 * 109.47268 * 55.53792 * 1 2 3 33 33 H 1.09002 * 109.47116 * 175.53123 * 1 2 3 34 34 H 0.97001 * 120.00411 * 276.32103 * 6 4 2 35 35 H 0.96997 * 120.00100 * 180.02562 * 10 9 7 36 36 H 1.09005 * 110.99999 * 277.22867 * 15 4 2 37 37 H 1.08997 * 111.00760 * 153.37930 * 15 4 2 38 38 H 1.09000 * 110.36808 * 204.15450 * 16 15 4 39 39 H 1.08996 * 110.36395 * 81.83493 * 16 15 4 40 40 H 1.07998 * 119.65428 * 0.04584 * 21 20 18 41 41 H 1.07991 * 119.96399 * 180.02562 * 24 22 21 42 42 H 1.07997 * 120.92397 * 359.97438 * 26 25 24 43 43 H 1.07996 * 120.03886 * 179.75035 * 27 26 25 44 44 H 1.08003 * 119.15513 * 180.21136 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2427 5 1 2.3598 -0.0450 -2.0191 6 7 1.0484 -1.6788 -1.7532 7 6 0.2263 -1.3013 -2.7813 8 1 0.3219 -0.3171 -3.2155 9 6 -0.7304 -2.1834 -3.2646 10 7 -0.8472 -3.3826 -2.7351 11 14 -1.8522 -1.6681 -4.6666 12 1 -1.2232 -2.0298 -5.9624 13 1 -3.1571 -2.3652 -4.5382 14 1 -2.0680 -0.1999 -4.6139 15 6 3.2863 -1.5183 -0.6914 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7140 1.1839 18 6 1.8072 -0.3620 2.4657 19 8 1.0861 0.5834 2.7201 20 6 2.4381 -1.1233 3.5596 21 6 2.6072 -2.4957 3.4507 22 6 3.2008 -3.2218 4.4780 23 9 3.3540 -4.5575 4.3463 24 6 3.6311 -2.6049 5.6176 25 6 3.4787 -1.2171 5.7669 26 6 3.9139 -0.5556 6.9313 27 6 3.7293 0.7958 7.0123 28 6 3.1337 1.4797 5.9558 29 7 2.7301 0.8585 4.8726 30 6 2.8768 -0.4596 4.7331 31 1 -0.3634 0.4430 0.9272 32 1 -0.3634 0.5815 -0.8473 33 1 -0.3633 -1.0246 -0.0801 34 1 0.9623 -2.5627 -1.3630 35 1 -1.5154 -3.9990 -3.0731 36 1 4.1669 -0.8767 -0.6578 37 1 3.4807 -2.4155 -1.2790 38 1 3.6655 -2.0411 1.3934 39 1 2.1802 -2.7718 0.7115 40 1 2.2747 -3.0060 2.5588 41 1 4.0901 -3.1849 6.4045 42 1 4.3764 -1.1019 7.7400 43 1 4.0479 1.3332 7.8932 44 1 2.9968 2.5484 6.0313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987105614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:46 Heat of formation + Delta-G solvation = -10.564487 kcal Electronic energy + Delta-G solvation = -29961.492264 eV Core-core repulsion = 25793.350026 eV Total energy + Delta-G solvation = -4168.142239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.02921 -42.14717 -41.00142 -38.81051 -37.81081 -35.78321 -34.63339 -33.34285 -32.26596 -31.60233 -31.16254 -30.15689 -26.99984 -25.94483 -25.43601 -24.66211 -24.54813 -23.16173 -21.38794 -20.30078 -19.73547 -19.35987 -18.53097 -18.27939 -17.71538 -17.35621 -16.77381 -16.59477 -16.45283 -15.92368 -15.87483 -15.54408 -15.33238 -15.17803 -15.12552 -15.07777 -14.53911 -14.25593 -14.18492 -13.99793 -13.66944 -13.35847 -13.17044 -13.04535 -12.80019 -12.69641 -12.50715 -12.42275 -12.31360 -12.19328 -11.81049 -11.74206 -11.62302 -11.48107 -11.06111 -10.91165 -10.32800 -9.86292 -9.67190 -9.36193 -8.99867 -7.91447 -5.18516 -1.00848 -0.40121 0.68364 1.46781 1.48311 1.49661 1.56788 1.86057 2.00186 2.57552 2.91779 3.01027 3.14472 3.28486 3.41544 3.56323 3.65625 3.74760 3.77349 3.88691 3.98053 3.99765 4.18375 4.23647 4.32666 4.39344 4.50241 4.51937 4.53648 4.57472 4.69267 4.74063 4.80877 4.82705 4.97622 5.00764 5.09793 5.16222 5.21944 5.25143 5.39768 5.48771 5.54362 5.59848 5.69828 6.29733 6.52304 6.95692 7.13900 7.38043 8.09629 8.34241 9.31434 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002975 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.559825 B = 9409.818407 C =10302.510719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.117 3.883 3 H 0.064 0.936 4 C 0.165 3.835 5 H 0.082 0.918 6 N -0.715 5.715 7 C -0.226 4.226 8 H 0.076 0.924 9 C -0.070 4.070 10 N -0.966 5.966 11 Si 0.961 3.039 12 H -0.287 1.287 13 H -0.302 1.302 14 H -0.273 1.273 15 C -0.130 4.130 16 C 0.097 3.903 17 N -0.601 5.601 18 C 0.567 3.433 19 O -0.552 6.552 20 C -0.096 4.096 21 C -0.100 4.100 22 C 0.086 3.914 23 F -0.133 7.133 24 C -0.087 4.087 25 C -0.099 4.099 26 C -0.046 4.046 27 C -0.160 4.160 28 C 0.128 3.872 29 N -0.504 5.504 30 C 0.129 3.871 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.375 0.625 35 H 0.248 0.752 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.152 0.848 41 H 0.188 0.812 42 H 0.189 0.811 43 H 0.184 0.816 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.937 3.267 22.756 28.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.011 3.989 3 H 0.082 0.918 4 C 0.054 3.946 5 H 0.100 0.900 6 N -0.353 5.353 7 C -0.358 4.358 8 H 0.094 0.906 9 C -0.262 4.262 10 N -0.616 5.616 11 Si 0.792 3.208 12 H -0.214 1.214 13 H -0.229 1.229 14 H -0.199 1.199 15 C -0.169 4.169 16 C -0.025 4.025 17 N -0.334 5.334 18 C 0.356 3.644 19 O -0.431 6.431 20 C -0.100 4.100 21 C -0.121 4.121 22 C 0.066 3.934 23 F -0.111 7.111 24 C -0.106 4.106 25 C -0.101 4.101 26 C -0.071 4.071 27 C -0.179 4.179 28 C -0.044 4.044 29 N -0.212 5.212 30 C 0.007 3.993 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.208 0.792 35 H 0.057 0.943 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.170 0.830 41 H 0.205 0.795 42 H 0.206 0.794 43 H 0.201 0.799 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 16.040 4.235 22.015 27.566 hybrid contribution -1.100 -0.827 -0.514 1.469 sum 14.940 3.409 21.501 26.403 Atomic orbital electron populations 1.21621 0.95831 1.01401 0.99176 1.22506 0.94360 0.95943 0.86133 0.91767 1.21450 0.88866 0.92150 0.92141 0.90011 1.42430 1.38749 1.14740 1.39344 1.19512 1.09825 0.98366 1.08101 0.90601 1.25381 1.01716 0.96576 1.02555 1.69782 1.38323 1.07660 1.45866 0.85313 0.78163 0.77475 0.79867 1.21398 1.22938 1.19862 1.23105 0.97671 1.01976 0.94171 1.22653 0.95175 0.87807 0.96840 1.48552 1.51892 1.28634 1.04360 1.17903 0.81105 0.83727 0.81677 1.90750 1.38593 1.30265 1.83475 1.19561 1.02570 0.93241 0.94596 1.21732 0.97432 0.92796 1.00126 1.17117 1.02554 0.77836 0.95868 1.91554 1.93730 1.29662 1.96199 1.21435 0.98464 0.93460 0.97235 1.18748 1.01151 0.94081 0.96167 1.21973 0.94675 0.95049 0.95434 1.22391 0.99226 0.95381 1.00915 1.23725 0.90648 1.02005 0.87998 1.68124 1.17526 1.09099 1.26460 1.18756 0.97138 0.90419 0.93033 0.94940 0.93009 0.93681 0.79208 0.94277 0.88136 0.88926 0.88550 0.91670 0.83019 0.79487 0.79378 0.79856 0.80342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.20 71.98 0.59 -4.85 16 2 C 0.12 4.47 3.46 45.34 0.16 4.63 16 3 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 4 C 0.16 6.09 3.53 46.18 0.16 6.25 16 5 H 0.08 2.94 8.06 -2.39 -0.02 2.92 16 6 N -0.71 -33.37 3.64 -317.33 -1.16 -34.53 16 7 C -0.23 -11.88 8.81 84.03 0.74 -11.14 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 10 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 11 Si 0.96 45.88 29.55 68.60 2.03 47.91 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 C -0.13 -3.68 6.70 31.99 0.21 -3.47 16 16 C 0.10 2.78 5.06 86.86 0.44 3.22 16 17 N -0.60 -21.23 3.06 -791.87 -2.43 -23.65 16 18 C 0.57 21.58 7.21 86.67 0.62 22.21 16 19 O -0.55 -25.15 14.83 -4.02 -0.06 -25.21 16 20 C -0.10 -2.96 5.55 -19.86 -0.11 -3.07 16 21 C -0.10 -2.55 7.86 22.59 0.18 -2.37 16 22 C 0.09 1.75 7.22 22.08 0.16 1.91 16 23 F -0.13 -2.74 17.24 44.97 0.78 -1.97 16 24 C -0.09 -1.32 9.71 22.40 0.22 -1.10 16 25 C -0.10 -1.83 5.74 -21.29 -0.12 -1.96 16 26 C -0.05 -0.48 9.89 22.53 0.22 -0.25 16 27 C -0.16 -1.66 10.03 22.13 0.22 -1.44 16 28 C 0.13 2.39 11.15 85.02 0.95 3.34 16 29 N -0.50 -14.94 9.01 -187.94 -1.69 -16.63 16 30 C 0.13 3.62 6.58 40.62 0.27 3.89 16 31 H 0.03 1.48 6.63 -2.39 -0.02 1.47 16 32 H 0.05 2.33 7.83 -2.39 -0.02 2.31 16 33 H 0.04 2.25 7.06 -2.39 -0.02 2.23 16 34 H 0.38 18.96 7.85 -92.71 -0.73 18.23 16 35 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.10 2.25 6.60 -2.39 -0.02 2.23 16 39 H 0.07 1.98 7.24 -2.39 -0.02 1.96 16 40 H 0.15 3.86 5.39 -2.91 -0.02 3.84 16 41 H 0.19 1.25 8.06 -2.92 -0.02 1.22 16 42 H 0.19 0.23 8.06 -2.91 -0.02 0.20 16 43 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 44 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -76.91 363.36 3.46 -73.45 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.33 Total: 25.59 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.38 Total: 12.36 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -4.99 Total: -132.12 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.91 3.46 -73.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987105614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.884 kcal (2) G-P(sol) polarization free energy of solvation -76.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds