Wall clock time and date at job start Wed Apr 1 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.00307 * 2 1 4 4 C 1.54342 * 109.99009 * 238.96041 * 2 1 3 5 5 H 1.08999 * 110.51591 * 336.97652 * 4 2 1 6 6 N 1.46499 * 110.99775 * 100.12617 * 4 2 1 7 7 C 1.36933 * 119.99777 * 200.23014 * 6 4 2 8 8 H 1.08007 * 120.00198 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00074 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00030 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99996 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46883 * 60.00744 * 11 9 7 13 13 H 1.48499 * 109.46879 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47259 * 300.00497 * 11 9 7 15 15 C 1.55157 * 103.02024 * 218.66761 * 4 2 1 16 16 C 1.54902 * 101.58291 * 35.30625 * 15 4 2 17 17 N 1.47019 * 109.88080 * 121.09957 * 2 1 3 18 18 C 1.34784 * 125.64531 * 298.38784 * 17 2 1 19 19 O 1.21561 * 119.99777 * 3.26181 * 18 17 2 20 20 C 1.47781 * 119.99667 * 183.26388 * 18 17 2 21 21 C 1.40607 * 119.79194 * 326.41474 * 20 18 17 22 22 C 1.35918 * 120.88950 * 180.02562 * 21 20 18 23 23 F 1.35102 * 119.96644 * 180.02562 * 22 21 20 24 24 C 1.40954 * 120.06475 * 359.97438 * 22 21 20 25 25 N 1.33623 * 120.83682 * 180.02562 * 24 22 21 26 26 C 1.31115 * 121.39774 * 179.97438 * 25 24 22 27 27 C 1.39321 * 121.76287 * 359.97438 * 26 25 24 28 28 C 1.36576 * 119.90227 * 0.06610 * 27 26 25 29 29 C 1.40899 * 118.15518 * 359.91158 * 28 27 26 30 30 C 1.38534 * 119.78977 * 146.46549 * 20 18 17 31 31 H 1.08999 * 109.47007 * 300.35943 * 1 2 3 32 32 H 1.08994 * 109.46883 * 60.35808 * 1 2 3 33 33 H 1.09001 * 109.47353 * 180.36009 * 1 2 3 34 34 H 0.97002 * 120.00170 * 20.23811 * 6 4 2 35 35 H 0.96997 * 119.99946 * 179.97438 * 10 9 7 36 36 H 1.09004 * 111.00201 * 277.23165 * 15 4 2 37 37 H 1.09001 * 111.00151 * 153.38206 * 15 4 2 38 38 H 1.09004 * 110.36947 * 204.15249 * 16 15 4 39 39 H 1.09000 * 110.46266 * 81.87933 * 16 15 4 40 40 H 1.07998 * 119.54990 * 0.04931 * 21 20 18 41 41 H 1.08001 * 119.11688 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.04921 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.92337 * 180.02562 * 28 27 26 44 44 H 1.08004 * 120.27084 * 0.24078 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0577 -0.7479 -1.2427 5 1 1.3053 -1.4407 -1.6197 6 7 2.4631 0.1937 -2.2892 7 6 2.5625 -0.2277 -3.5883 8 1 2.3415 -1.2541 -3.8415 9 6 2.9461 0.6646 -4.5801 10 7 3.2149 1.9157 -4.2716 11 14 3.0810 0.0899 -6.3523 12 1 1.7608 -0.4112 -6.8120 13 1 3.5057 1.2254 -7.2099 14 1 4.0839 -1.0013 -6.4439 15 6 3.2863 -1.5185 -0.6915 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 1.0931 0.5882 2.7197 20 6 2.4317 -1.1313 3.5623 21 6 2.6317 -2.5156 3.4188 22 6 3.2033 -3.2448 4.4132 23 9 3.3871 -4.5740 4.2553 24 6 3.6055 -2.6156 5.6087 25 7 4.1694 -3.3174 6.5960 26 6 4.5480 -2.7433 7.7123 27 6 4.3835 -1.3765 7.9266 28 6 3.8131 -0.5995 6.9590 29 6 3.4080 -1.2203 5.7608 30 6 2.8153 -0.4840 4.7255 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8931 33 1 -0.3634 -1.0276 0.0065 34 1 2.6613 1.1157 -2.0619 35 1 3.4833 2.5391 -4.9646 36 1 4.1670 -0.8770 -0.6580 37 1 3.4806 -2.4157 -1.2792 38 1 3.6656 -2.0413 1.3932 39 1 2.1806 -2.7722 0.7134 40 1 2.3273 -3.0060 2.5060 41 1 5.0004 -3.3459 8.4861 42 1 4.7059 -0.9323 8.8567 43 1 3.6779 0.4617 7.1075 44 1 2.6562 0.5786 4.8350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987195687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:11 Heat of formation + Delta-G solvation = 1.694237 kcal Electronic energy + Delta-G solvation = -29205.466018 eV Core-core repulsion = 25037.855358 eV Total energy + Delta-G solvation = -4167.610660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.12713 -41.26961 -40.14606 -37.80292 -36.85136 -34.25459 -33.74475 -32.12979 -31.13912 -30.71335 -30.20743 -29.06561 -25.45655 -25.33037 -24.51123 -23.18064 -22.75369 -22.30711 -20.48117 -19.69736 -18.81079 -17.97922 -17.45202 -17.29952 -16.59024 -16.22451 -15.96866 -15.91894 -15.26442 -15.05320 -14.82212 -14.59532 -14.32965 -13.99662 -13.67442 -13.57379 -13.45522 -13.15862 -13.07399 -12.97604 -12.57477 -12.31834 -12.05324 -12.02031 -11.77175 -11.55440 -11.21566 -11.07488 -10.89145 -10.83323 -10.62846 -10.32304 -10.11720 -10.04082 -9.87328 -9.73429 -9.32958 -8.97915 -8.65101 -8.44536 -7.07576 -5.84950 -3.15724 -0.21749 0.14441 1.40336 2.04846 2.85751 3.02153 3.39559 3.44426 3.45304 3.52045 3.57636 3.81929 4.12967 4.18718 4.35271 4.41336 4.51501 4.62878 4.71564 4.87214 4.95205 5.06598 5.13719 5.26362 5.30812 5.38315 5.46215 5.50221 5.52069 5.60297 5.64588 5.71598 5.78891 5.89122 5.97602 6.02303 6.07960 6.23572 6.29084 6.38693 6.52789 6.55952 6.63772 6.86637 7.35340 7.57147 7.62174 8.11870 8.32251 9.43809 9.97475 10.32184 11.37091 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.002379 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.615688 B =11768.636729 C =12238.142745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.176 3.824 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.090 3.910 17 N -0.599 5.599 18 C 0.571 3.429 19 O -0.532 6.532 20 C -0.093 4.093 21 C -0.122 4.122 22 C 0.123 3.877 23 F -0.119 7.119 24 C 0.109 3.891 25 N -0.468 5.468 26 C 0.138 3.862 27 C -0.171 4.171 28 C -0.047 4.047 29 C -0.088 4.088 30 C -0.043 4.043 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 -8.158 24.515 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.354 5.354 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.033 4.033 17 N -0.332 5.332 18 C 0.359 3.641 19 O -0.410 6.410 20 C -0.097 4.097 21 C -0.142 4.142 22 C 0.103 3.897 23 F -0.097 7.097 24 C -0.013 4.013 25 N -0.175 5.175 26 C -0.034 4.034 27 C -0.190 4.190 28 C -0.073 4.073 29 C -0.090 4.090 30 C -0.063 4.063 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.086 -8.646 24.265 25.782 hybrid contribution 0.247 0.551 -0.779 0.986 sum 1.333 -8.095 23.486 24.878 Atomic orbital electron populations 1.22062 0.94581 1.01781 1.02924 1.21971 0.94607 0.96943 0.84050 0.90158 1.21246 0.93529 0.91653 0.87112 0.91634 1.42320 1.80728 1.09313 1.03086 1.19144 1.39392 0.95252 0.83779 0.91014 1.24769 1.01982 0.95646 0.98187 1.69651 1.52185 1.03182 1.32713 0.86251 0.77846 0.77317 0.84640 1.21157 1.21675 1.21181 1.23604 1.01508 1.01935 0.92665 1.22710 0.94837 0.88109 0.97680 1.48471 1.51537 1.28377 1.04774 1.17667 0.81262 0.83862 0.81288 1.90792 1.38097 1.28925 1.83166 1.19690 1.01488 0.92935 0.95552 1.21319 0.99445 0.93793 0.99688 1.16867 1.01331 0.78307 0.93191 1.91549 1.92894 1.29808 1.95483 1.18879 0.98573 0.90341 0.93531 1.68043 1.10056 1.38687 1.00763 1.23079 0.93636 0.92775 0.93955 1.21984 1.00869 0.95314 1.00882 1.21571 0.93676 1.00864 0.91199 1.18562 1.01180 0.93157 0.96085 1.21404 0.93913 1.00723 0.90261 0.91769 0.90985 0.92996 0.77971 0.93288 0.90443 0.90310 0.90782 0.91234 0.82608 0.81833 0.83866 0.83424 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.10 37.16 0.34 -2.16 16 2 C 0.13 2.16 3.24 -66.94 -0.22 1.95 16 3 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 4 C 0.18 3.25 3.11 -66.09 -0.21 3.04 16 5 H 0.07 1.21 7.82 -51.93 -0.41 0.80 16 6 N -0.71 -16.86 5.25 -51.64 -0.27 -17.13 16 7 C -0.24 -6.43 9.98 -15.06 -0.15 -6.58 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 11 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.16 -2.45 6.77 -24.59 -0.17 -2.62 16 16 C 0.09 1.14 5.08 -2.53 -0.01 1.12 16 17 N -0.60 -8.88 3.06 -164.13 -0.50 -9.39 16 18 C 0.57 8.56 7.37 -12.36 -0.09 8.47 16 19 O -0.53 -9.44 15.68 5.31 0.08 -9.36 16 20 C -0.09 -1.14 5.57 -104.99 -0.58 -1.73 16 21 C -0.12 -1.37 7.76 -39.52 -0.31 -1.67 16 22 C 0.12 1.47 7.29 -39.39 -0.29 1.18 16 23 F -0.12 -1.51 17.10 2.25 0.04 -1.47 16 24 C 0.11 1.27 6.61 -84.72 -0.56 0.71 16 25 N -0.47 -5.21 10.19 -10.88 -0.11 -5.33 16 26 C 0.14 1.02 11.15 -17.45 -0.19 0.82 16 27 C -0.17 -0.98 10.03 -39.78 -0.40 -1.38 16 28 C -0.05 -0.33 9.89 -39.18 -0.39 -0.72 16 29 C -0.09 -0.87 5.74 -106.82 -0.61 -1.49 16 30 C -0.04 -0.46 9.35 -38.74 -0.36 -0.82 16 31 H 0.06 1.07 6.78 -51.93 -0.35 0.71 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.39 9.85 7.53 -40.82 -0.31 9.55 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 39 H 0.07 0.75 7.17 -51.93 -0.37 0.38 16 40 H 0.16 1.56 5.13 -52.49 -0.27 1.29 16 41 H 0.16 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.15 1.43 7.95 -52.48 -0.42 1.01 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -32.30 368.22 -9.18 -41.48 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.37 Total: 7.73 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -4.30 Total: -2.22 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.16 Total: -58.37 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.30 -9.18 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987195687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.174 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds