Wall clock time and date at job start Wed Apr 1 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.87435 * 2 1 4 4 C 1.54318 * 109.88413 * 238.97757 * 2 1 3 5 5 C 1.55160 * 102.94494 * 218.38751 * 4 2 1 6 6 H 1.08991 * 111.00612 * 153.61516 * 5 4 2 7 7 N 1.46499 * 111.00408 * 277.43050 * 5 4 2 8 8 C 1.36940 * 119.99951 * 204.99421 * 7 5 4 9 9 H 1.07998 * 119.99597 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00167 * 179.97438 * 8 7 5 11 11 N 1.31613 * 120.00204 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99841 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.46952 * 269.99538 * 12 10 8 14 14 H 1.48497 * 109.47021 * 29.99789 * 12 10 8 15 15 H 1.48498 * 109.47003 * 149.99839 * 12 10 8 16 16 C 1.54915 * 101.58091 * 35.50222 * 5 4 2 17 17 N 1.47023 * 109.88589 * 121.16550 * 2 1 3 18 18 C 1.34783 * 125.65038 * 298.32369 * 17 2 1 19 19 O 1.21567 * 120.00055 * 181.50225 * 18 17 2 20 20 C 1.47760 * 119.99915 * 1.49581 * 18 17 2 21 21 C 1.40610 * 120.27059 * 351.31199 * 20 18 17 22 22 N 1.30795 * 121.53278 * 179.97438 * 21 20 18 23 23 C 1.33788 * 121.72179 * 0.02562 * 22 21 20 24 24 C 1.40753 * 120.82448 * 180.02562 * 23 22 21 25 25 F 1.35102 * 120.11837 * 359.95780 * 24 23 22 26 26 C 1.36333 * 119.76278 * 179.97438 * 24 23 22 27 27 C 1.39307 * 121.06305 * 0.04566 * 26 24 23 28 28 C 1.36141 * 120.86494 * 359.97438 * 27 26 24 29 29 C 1.40550 * 119.67155 * 359.97438 * 28 27 26 30 30 C 1.39001 * 120.27121 * 171.04113 * 20 18 17 31 31 H 1.09002 * 109.46586 * 168.69079 * 1 2 3 32 32 H 1.08999 * 109.47310 * 288.68680 * 1 2 3 33 33 H 1.08992 * 109.47082 * 48.69175 * 1 2 3 34 34 H 1.09001 * 110.71715 * 100.03030 * 4 2 1 35 35 H 1.08995 * 110.87622 * 336.82512 * 4 2 1 36 36 H 0.97002 * 120.00093 * 24.99672 * 7 5 4 37 37 H 0.97006 * 120.00137 * 180.02562 * 11 10 8 38 38 H 1.08996 * 110.36725 * 81.82358 * 16 5 4 39 39 H 1.08990 * 110.36795 * 204.15594 * 16 5 4 40 40 H 1.08003 * 119.23477 * 359.96474 * 21 20 18 41 41 H 1.08006 * 119.46720 * 179.97438 * 26 24 23 42 42 H 1.07997 * 119.56615 * 179.97438 * 27 26 24 43 43 H 1.08003 * 120.16609 * 179.97438 * 28 27 26 44 44 H 1.08006 * 121.01408 * 359.97438 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2436 5 6 3.2877 -1.5133 -0.6943 6 1 3.4857 -2.4089 -1.2830 7 7 4.4674 -0.6459 -0.6501 8 6 5.7218 -1.1929 -0.7001 9 1 5.8413 -2.2639 -0.7724 10 6 6.8396 -0.3710 -0.6588 11 7 8.0452 -0.8968 -0.7072 12 14 6.6328 1.4814 -0.5343 13 1 6.5621 2.0642 -1.8983 14 1 5.3811 1.7913 0.2020 15 1 7.7910 2.0610 0.1922 16 6 2.8146 -1.8803 0.7345 17 7 2.0301 -0.7155 1.1830 18 6 1.8086 -0.3643 2.4653 19 8 2.2962 -1.0174 3.3673 20 6 0.9734 0.8147 2.7747 21 6 0.5579 1.6786 1.7461 22 7 -0.1820 2.7288 1.9919 23 6 -0.5801 3.0341 3.2322 24 6 -1.3767 4.1688 3.4751 25 9 -1.7494 4.9673 2.4511 26 6 -1.7705 4.4593 4.7476 27 6 -1.3965 3.6503 5.8182 28 6 -0.6263 2.5448 5.6226 29 6 -0.2023 2.2132 4.3243 30 6 0.5873 1.0756 4.0843 31 1 -0.3632 -1.0078 -0.2015 32 1 -0.3634 0.3293 0.9735 33 1 -0.3633 0.6783 -0.7719 34 1 2.3530 -0.0433 -2.0200 35 1 1.3066 -1.4437 -1.6229 36 1 4.3600 0.3160 -0.5855 37 1 8.8264 -0.3224 -0.6780 38 1 2.1887 -2.7723 0.7094 39 1 3.6716 -2.0355 1.3897 40 1 0.8569 1.4703 0.7294 41 1 -2.3814 5.3314 4.9287 42 1 -1.7218 3.9033 6.8165 43 1 -0.3426 1.9258 6.4609 44 1 0.8881 0.4261 4.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989196266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:10 Heat of formation + Delta-G solvation = 42.536769 kcal Electronic energy + Delta-G solvation = -29896.440347 eV Core-core repulsion = 25730.600752 eV Total energy + Delta-G solvation = -4165.839595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.12516 -41.54443 -40.01756 -37.76728 -37.35726 -34.60675 -33.52252 -32.35120 -31.57276 -30.84482 -30.07942 -29.07325 -26.17515 -25.13812 -24.30716 -23.38801 -22.49342 -22.38546 -20.35296 -19.77136 -19.03105 -18.14569 -17.82575 -17.29403 -16.88830 -16.10677 -15.97598 -15.71364 -15.45056 -15.03852 -14.90129 -14.62998 -14.25983 -14.13722 -13.78352 -13.61086 -13.44785 -13.20163 -13.03437 -12.73755 -12.62025 -12.38804 -12.29764 -12.12799 -11.81814 -11.77253 -11.32756 -11.17187 -10.89979 -10.81251 -10.67283 -10.53479 -10.22243 -10.18460 -9.67084 -9.63761 -9.14418 -9.12269 -8.57894 -8.43988 -7.38944 -5.85065 -3.22600 -0.17595 0.20469 1.39609 2.23944 2.97465 3.04417 3.32587 3.34635 3.41416 3.58089 3.68740 3.87756 4.18080 4.26923 4.39638 4.40007 4.51931 4.55888 4.58212 4.69453 4.75627 4.87354 5.07642 5.13791 5.16050 5.20311 5.35149 5.37588 5.48193 5.56431 5.59090 5.65651 5.67435 5.74298 5.88235 5.89856 6.02734 6.03845 6.04628 6.15018 6.30732 6.35469 6.49926 6.61320 7.45815 7.59846 7.88493 8.18225 8.33356 9.09717 9.82189 9.99446 11.32634 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.003145 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.014186 B = 8901.810012 C = 9189.398930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.109 3.891 3 H 0.086 0.914 4 C -0.138 4.138 5 C 0.174 3.826 6 H 0.088 0.912 7 N -0.735 5.735 8 C -0.251 4.251 9 H 0.094 0.906 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.881 3.119 13 H -0.282 1.282 14 H -0.278 1.278 15 H -0.290 1.290 16 C 0.078 3.922 17 N -0.593 5.593 18 C 0.575 3.425 19 O -0.533 6.533 20 C -0.180 4.180 21 C 0.130 3.870 22 N -0.475 5.475 23 C 0.110 3.890 24 C 0.120 3.880 25 F -0.122 7.122 26 C -0.133 4.133 27 C -0.100 4.100 28 C -0.092 4.092 29 C -0.095 4.095 30 C 0.007 3.993 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.362 0.638 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.206 0.794 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.514 7.045 8.675 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.006 3.994 3 H 0.103 0.897 4 C -0.177 4.177 5 C 0.062 3.938 6 H 0.106 0.894 7 N -0.376 5.376 8 C -0.381 4.381 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.711 3.289 13 H -0.209 1.209 14 H -0.205 1.205 15 H -0.216 1.216 16 C -0.046 4.046 17 N -0.325 5.325 18 C 0.363 3.637 19 O -0.411 6.411 20 C -0.185 4.185 21 C -0.041 4.041 22 N -0.183 5.183 23 C -0.012 4.012 24 C 0.100 3.900 25 F -0.100 7.100 26 C -0.154 4.154 27 C -0.119 4.119 28 C -0.111 4.111 29 C -0.097 4.097 30 C -0.019 4.019 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.221 0.779 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.344 7.209 8.529 25.877 hybrid contribution 0.174 1.099 0.710 1.320 sum -23.170 8.308 9.239 26.291 Atomic orbital electron populations 1.22946 0.94728 1.03727 1.02915 1.22012 0.93851 0.96633 0.86933 0.89654 1.23132 0.98792 1.00257 0.95536 1.21343 0.85944 0.94548 0.91992 0.89442 1.42688 1.01916 1.04190 1.88847 1.19056 0.81175 0.94198 1.43652 0.88858 1.24661 0.95099 0.97330 1.01487 1.69689 0.96938 1.34261 1.56629 0.86609 0.77104 0.87314 0.77826 1.20856 1.20478 1.21620 1.23379 0.95040 0.86285 0.99935 1.48320 1.51409 1.28879 1.03891 1.17487 0.80659 0.83701 0.81876 1.90790 1.51159 1.54320 1.44876 1.21116 1.02972 0.99084 0.95317 1.25171 0.89759 0.87117 1.02006 1.68123 1.12586 1.17380 1.20180 1.19020 0.97410 0.94741 0.89998 1.17139 0.98253 0.89619 0.84996 1.91535 1.89115 1.71318 1.58068 1.20953 1.01821 1.01811 0.90796 1.20697 0.97821 0.94348 0.98989 1.21115 0.97113 0.97519 0.95330 1.18604 1.00400 0.96290 0.94420 1.21949 0.90026 0.93380 0.96565 0.91109 0.91286 0.90270 0.89310 0.89718 0.80541 0.92901 0.92004 0.89286 0.77898 0.83916 0.84309 0.84189 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 7.81 37.16 0.29 -1.54 16 2 C 0.11 1.36 2.72 -66.96 -0.18 1.18 16 3 H 0.09 1.09 6.24 -51.93 -0.32 0.76 16 4 C -0.14 -1.70 6.07 -24.90 -0.15 -1.85 16 5 C 0.17 2.90 3.72 -65.78 -0.24 2.65 16 6 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 7 N -0.74 -16.08 5.04 -51.35 -0.26 -16.34 16 8 C -0.25 -6.74 10.44 -15.06 -0.16 -6.90 16 9 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 11 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 12 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 C 0.08 1.30 6.61 -2.52 -0.02 1.28 16 17 N -0.59 -9.22 3.06 -166.44 -0.51 -9.73 16 18 C 0.57 9.63 7.65 -12.37 -0.09 9.53 16 19 O -0.53 -10.57 16.67 5.31 0.09 -10.49 16 20 C -0.18 -2.55 5.33 -104.83 -0.56 -3.11 16 21 C 0.13 1.75 7.35 -17.10 -0.13 1.62 16 22 N -0.48 -6.70 10.17 -10.69 -0.11 -6.81 16 23 C 0.11 1.43 6.61 -84.72 -0.56 0.87 16 24 C 0.12 1.37 7.30 -39.32 -0.29 1.09 16 25 F -0.12 -1.54 17.11 2.25 0.04 -1.50 16 26 C -0.13 -1.08 9.91 -39.87 -0.40 -1.47 16 27 C -0.10 -0.68 9.95 -39.94 -0.40 -1.08 16 28 C -0.09 -0.75 9.77 -39.46 -0.39 -1.13 16 29 C -0.09 -1.08 5.74 -106.82 -0.61 -1.69 16 30 C 0.01 0.09 9.46 -38.43 -0.36 -0.27 16 31 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 32 H 0.07 0.76 4.20 -52.07 -0.22 0.55 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 36 H 0.36 7.92 5.73 -40.82 -0.23 7.69 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.81 8.02 -51.93 -0.42 1.39 16 40 H 0.21 2.48 2.12 -55.60 -0.12 2.37 16 41 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 44 H 0.16 1.74 7.73 -52.48 -0.41 1.33 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -34.26 359.11 -8.69 -42.95 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.07 Total: 7.84 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -4.34 Total: -0.61 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.10 Total: -60.74 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.26 -8.69 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989196266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.486 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds