Wall clock time and date at job start Wed Apr 1 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.87375 * 2 1 4 4 C 1.54321 * 110.01533 * 238.89954 * 2 1 3 5 5 C 1.55164 * 102.94144 * 262.70346 * 4 2 1 6 6 H 1.09002 * 111.03845 * 82.58353 * 5 4 2 7 7 N 1.46500 * 111.00160 * 206.41951 * 5 4 2 8 8 C 1.36937 * 119.99803 * 198.64747 * 7 5 4 9 9 H 1.08001 * 120.00228 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99932 * 180.27479 * 8 7 5 11 11 N 1.31622 * 119.99665 * 359.73055 * 10 8 7 12 12 Si 1.86799 * 120.00198 * 179.72305 * 10 8 7 13 13 H 1.48509 * 109.46621 * 60.00212 * 12 10 8 14 14 H 1.48497 * 109.47104 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47224 * 300.00390 * 12 10 8 16 16 C 1.54908 * 101.57982 * 324.49586 * 5 4 2 17 17 N 1.47028 * 109.88599 * 121.01116 * 2 1 3 18 18 C 1.34780 * 125.64549 * 300.60251 * 17 2 1 19 19 O 1.21613 * 119.99958 * 355.25845 * 18 17 2 20 20 C 1.47394 * 119.99498 * 175.26110 * 18 17 2 21 21 C 1.38949 * 120.65608 * 41.19530 * 20 18 17 22 22 C 1.38740 * 120.73588 * 179.74021 * 21 20 18 23 23 C 1.37494 * 121.67115 * 0.56781 * 22 21 20 24 24 F 1.35106 * 119.85124 * 179.71630 * 23 22 21 25 25 C 1.40585 * 120.29850 * 359.69665 * 23 22 21 26 26 C 1.40588 * 122.24364 * 180.02562 * 25 23 22 27 27 C 1.36319 * 118.64768 * 179.97438 * 26 25 23 28 28 N 1.32491 * 121.87283 * 0.02562 * 27 26 25 29 29 C 1.31362 * 122.69066 * 359.94992 * 28 27 26 30 30 C 1.40013 * 119.84981 * 0.05018 * 29 28 27 31 31 H 1.09002 * 109.47240 * 300.43946 * 1 2 3 32 32 H 1.08996 * 109.47186 * 60.44590 * 1 2 3 33 33 H 1.09010 * 109.46706 * 180.44100 * 1 2 3 34 34 H 1.08991 * 110.72690 * 144.33850 * 4 2 1 35 35 H 1.09002 * 110.71473 * 21.06173 * 4 2 1 36 36 H 0.97000 * 120.00112 * 18.64744 * 7 5 4 37 37 H 0.97005 * 119.99365 * 179.97438 * 11 10 8 38 38 H 1.08994 * 110.36283 * 155.85479 * 16 5 4 39 39 H 1.08997 * 110.36243 * 278.06082 * 16 5 4 40 40 H 1.08001 * 119.63116 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.16073 * 180.26414 * 22 21 20 42 42 H 1.08005 * 120.67810 * 359.95351 * 26 25 23 43 43 H 1.07996 * 119.06296 * 180.02562 * 27 26 25 44 44 H 1.08004 * 120.07817 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7490 -1.2416 5 6 2.3576 -2.1681 -0.6901 6 1 1.4526 -2.7748 -0.6589 7 7 3.4019 -2.8279 -1.4776 8 6 3.5500 -4.1878 -1.4155 9 1 2.8966 -4.7740 -0.7862 10 6 4.5431 -4.8125 -2.1573 11 7 5.3391 -4.0981 -2.9245 12 14 4.7502 -6.6667 -2.0666 13 1 3.4980 -7.3271 -2.5156 14 1 5.8717 -7.0832 -2.9462 15 1 5.0447 -7.0640 -0.6664 16 6 2.8599 -1.8465 0.7396 17 7 2.0301 -0.7123 1.1850 18 6 1.7730 -0.3826 2.4663 19 8 1.1445 0.6272 2.7199 20 6 2.2536 -1.2459 3.5600 21 6 3.5232 -1.8085 3.5128 22 6 3.9793 -2.6170 4.5439 23 6 3.1971 -2.9013 5.6384 24 9 3.6763 -3.6979 6.6188 25 6 1.9011 -2.3664 5.7421 26 6 1.0669 -2.6296 6.8427 27 6 -0.1768 -2.0721 6.8682 28 7 -0.6153 -1.2950 5.8888 29 6 0.1104 -1.0072 4.8324 30 6 1.4032 -1.5311 4.7112 31 1 -0.3634 0.5206 0.8860 32 1 -0.3633 0.5069 -0.8939 33 1 -0.3633 -1.0278 0.0079 34 1 2.9684 -0.2809 -1.6162 35 1 1.2962 -0.7906 -2.0199 36 1 3.9885 -2.3015 -2.0431 37 1 6.0334 -4.5346 -3.4426 38 1 2.7130 -2.7047 1.3952 39 1 3.9121 -1.5630 0.7171 40 1 4.1635 -1.6112 2.6657 41 1 4.9721 -3.0377 4.4829 42 1 1.4044 -3.2610 7.6514 43 1 -0.8230 -2.2695 7.7106 44 1 -0.2893 -0.3683 4.0587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989339236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:02 Heat of formation + Delta-G solvation = -2.779494 kcal Electronic energy + Delta-G solvation = -29794.135434 eV Core-core repulsion = 25626.330778 eV Total energy + Delta-G solvation = -4167.804656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.30176 -41.09728 -39.90942 -37.64602 -37.12515 -34.30038 -33.10534 -31.87017 -31.48266 -31.40101 -29.51296 -28.43520 -25.73122 -25.00415 -24.11861 -24.00670 -23.41530 -21.62774 -20.33221 -19.39903 -18.62821 -17.94593 -17.62860 -17.41389 -16.51194 -16.09076 -15.96964 -15.59731 -15.30417 -15.16343 -14.76216 -14.46698 -14.25040 -14.08858 -13.83150 -13.64515 -13.33658 -13.18292 -13.07887 -12.89803 -12.56405 -12.45408 -12.20133 -11.93378 -11.87117 -11.71843 -11.26811 -11.03547 -10.84198 -10.72478 -10.39988 -10.32667 -10.09174 -9.95328 -9.83162 -9.73682 -9.48767 -9.10427 -8.55468 -8.24460 -7.18914 -5.93674 -3.25195 -0.21027 0.51381 1.29484 2.39084 2.77606 3.05609 3.34069 3.39805 3.40220 3.67137 3.71061 4.14996 4.16911 4.33582 4.34845 4.46985 4.50243 4.60900 4.89512 4.97522 5.02275 5.12350 5.19391 5.34844 5.36345 5.41581 5.48533 5.52855 5.53379 5.66641 5.73734 5.74693 5.79213 5.83829 5.99395 6.00500 6.10558 6.18013 6.28175 6.32219 6.38863 6.41995 6.49789 6.73318 7.54309 7.57975 7.70439 8.10272 8.23828 9.35990 9.88377 10.23297 11.27967 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.003677 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.288746 B = 7613.870028 C = 9542.294423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.065 0.935 7 N -0.711 5.711 8 C -0.252 4.252 9 H 0.072 0.928 10 C -0.005 4.005 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.065 3.935 17 N -0.598 5.598 18 C 0.574 3.426 19 O -0.539 6.539 20 C -0.100 4.100 21 C -0.055 4.055 22 C -0.132 4.132 23 C 0.119 3.881 24 F -0.128 7.128 25 C -0.054 4.054 26 C -0.151 4.151 27 C 0.081 3.919 28 N -0.480 5.480 29 C 0.157 3.843 30 C -0.057 4.057 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.388 0.612 37 H 0.258 0.742 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 5.873 14.902 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.061 3.939 6 H 0.083 0.917 7 N -0.351 5.351 8 C -0.383 4.383 9 H 0.090 0.910 10 C -0.202 4.202 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.061 4.061 17 N -0.330 5.330 18 C 0.363 3.637 19 O -0.418 6.418 20 C -0.105 4.105 21 C -0.074 4.074 22 C -0.152 4.152 23 C 0.099 3.901 24 F -0.106 7.106 25 C -0.060 4.060 26 C -0.171 4.171 27 C -0.064 4.064 28 N -0.188 5.188 29 C -0.013 4.013 30 C -0.060 4.060 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.175 0.825 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.540 6.466 15.315 18.254 hybrid contribution 1.608 -1.566 0.055 2.245 sum -5.932 4.899 15.370 17.188 Atomic orbital electron populations 1.22142 0.94771 1.02466 1.02647 1.21554 0.94534 0.96096 0.84190 0.90756 1.23001 1.01884 0.96821 0.95826 1.21281 0.92830 0.91325 0.88421 0.91674 1.42312 1.36759 1.04889 1.51168 1.19180 1.13185 0.83152 1.22774 0.91029 1.24756 0.98200 0.98013 0.99224 1.69646 1.21743 1.34624 1.31523 0.86284 0.77365 0.85186 0.77425 1.21088 1.21579 1.21107 1.23766 0.94800 0.87252 1.00276 1.48554 1.49464 1.30762 1.04233 1.17532 0.80046 0.84780 0.81386 1.90768 1.41672 1.26012 1.83378 1.20888 0.95081 0.99912 0.94614 1.21485 0.94917 0.92974 0.98010 1.21073 1.01306 1.00062 0.92751 1.17597 0.92001 0.93157 0.87332 1.91520 1.87848 1.70819 1.60396 1.17991 0.93581 0.98542 0.95914 1.21838 0.95368 1.01814 0.98079 1.22287 0.93918 0.93239 0.96909 1.67590 1.36652 1.13108 1.01443 1.23486 0.88588 0.94208 0.95009 1.19471 0.95868 0.97620 0.93057 0.91489 0.91629 0.92286 0.90360 0.89911 0.77769 0.93202 0.90879 0.90761 0.83078 0.83326 0.83881 0.82494 0.80500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.07 37.16 0.34 -1.65 16 2 C 0.14 1.85 3.46 -66.95 -0.23 1.62 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -1.93 6.12 -24.89 -0.15 -2.08 16 5 C 0.17 2.98 3.69 -65.78 -0.24 2.74 16 6 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 7 N -0.71 -15.70 5.28 -51.35 -0.27 -15.97 16 8 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 11 N -0.93 -26.03 13.06 55.49 0.72 -25.31 16 12 Si 0.91 20.96 29.55 -169.99 -5.02 15.94 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.06 0.98 4.94 -2.53 -0.01 0.97 16 17 N -0.60 -8.49 3.08 -164.29 -0.51 -8.99 16 18 C 0.57 8.44 6.89 -12.53 -0.09 8.36 16 19 O -0.54 -8.88 14.13 5.27 0.07 -8.81 16 20 C -0.10 -1.34 5.56 -102.83 -0.57 -1.91 16 21 C -0.06 -0.66 7.96 -39.13 -0.31 -0.97 16 22 C -0.13 -1.44 9.90 -39.67 -0.39 -1.83 16 23 C 0.12 1.38 7.28 -38.97 -0.28 1.10 16 24 F -0.13 -1.44 16.72 2.25 0.04 -1.40 16 25 C -0.05 -0.66 5.75 -106.80 -0.61 -1.28 16 26 C -0.15 -1.59 9.70 -39.39 -0.38 -1.97 16 27 C 0.08 0.86 11.07 -17.96 -0.20 0.66 16 28 N -0.48 -6.28 10.30 -13.23 -0.14 -6.42 16 29 C 0.16 2.12 10.50 -17.09 -0.18 1.94 16 30 C -0.06 -0.77 5.90 -104.82 -0.62 -1.38 16 31 H 0.07 0.89 6.89 -51.93 -0.36 0.53 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 35 H 0.08 1.09 7.83 -51.93 -0.41 0.69 16 36 H 0.39 9.15 7.71 -40.82 -0.31 8.83 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.07 1.12 6.78 -51.93 -0.35 0.77 16 39 H 0.07 1.15 7.34 -51.93 -0.38 0.77 16 40 H 0.15 1.70 5.95 -52.49 -0.31 1.39 16 41 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.14 1.16 7.81 -52.48 -0.41 0.75 16 43 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.18 2.43 6.19 -52.48 -0.32 2.11 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -29.21 366.02 -9.13 -38.33 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.36 Total: 9.51 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.19 Total: -2.40 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.19 Total: -56.69 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.21 -9.13 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989339236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.555 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds