Wall clock time and date at job start Wed Apr 1 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99942 * 2 1 4 4 C 1.54322 * 109.88441 * 238.89980 * 2 1 3 5 5 C 1.55159 * 102.94374 * 262.77551 * 4 2 1 6 6 H 1.09002 * 111.00221 * 82.57219 * 5 4 2 7 7 N 1.46494 * 111.00359 * 206.38614 * 5 4 2 8 8 C 1.36942 * 120.00011 * 205.00344 * 7 5 4 9 9 H 1.07999 * 119.99791 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00183 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99754 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00072 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47452 * 59.99690 * 12 10 8 14 14 H 1.48503 * 109.47136 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47009 * 299.99854 * 12 10 8 16 16 C 1.55130 * 101.48531 * 324.33621 * 5 4 2 17 17 N 1.47022 * 109.88057 * 121.09288 * 2 1 3 18 18 C 1.34778 * 125.65078 * 300.44284 * 17 2 1 19 19 O 1.21610 * 119.99936 * 5.24242 * 18 17 2 20 20 C 1.47438 * 120.00314 * 185.23625 * 18 17 2 21 21 C 1.38718 * 120.31483 * 36.55791 * 20 18 17 22 22 C 1.39101 * 120.70097 * 180.33606 * 21 20 18 23 23 F 1.35101 * 119.50120 * 179.97438 * 22 21 20 24 24 C 1.36536 * 120.99710 * 359.88957 * 22 21 20 25 25 C 1.40408 * 120.07414 * 0.08399 * 24 22 21 26 26 C 1.40813 * 121.23056 * 179.97438 * 25 24 22 27 27 C 1.36628 * 118.16013 * 180.02562 * 26 25 24 28 28 C 1.39243 * 119.90104 * 359.97438 * 27 26 25 29 29 N 1.31225 * 121.69894 * 0.02562 * 28 27 26 30 30 C 1.33359 * 121.36140 * 359.95437 * 29 28 27 31 31 H 1.08997 * 109.47408 * 300.35818 * 1 2 3 32 32 H 1.09000 * 109.46938 * 60.36562 * 1 2 3 33 33 H 1.09003 * 109.46770 * 180.35825 * 1 2 3 34 34 H 1.08998 * 110.72314 * 21.14396 * 4 2 1 35 35 H 1.08999 * 110.71982 * 144.41498 * 4 2 1 36 36 H 0.96998 * 120.00395 * 25.00391 * 7 5 4 37 37 H 0.96998 * 120.00062 * 180.02562 * 11 10 8 38 38 H 1.08997 * 110.49538 * 278.45127 * 16 5 4 39 39 H 1.09000 * 110.34136 * 156.05840 * 16 5 4 40 40 H 1.08001 * 119.65035 * 0.24466 * 21 20 18 41 41 H 1.08007 * 119.96107 * 180.02562 * 24 22 21 42 42 H 1.08002 * 120.92100 * 0.04699 * 26 25 24 43 43 H 1.07998 * 120.05141 * 180.02562 * 27 26 25 44 44 H 1.07992 * 119.15043 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 2.3519 -2.1695 -0.6922 6 1 1.4452 -2.7737 -0.6602 7 7 3.3931 -2.8316 -1.4819 8 6 3.4559 -4.1990 -1.5229 9 1 2.7381 -4.7892 -0.9728 10 6 4.4428 -4.8264 -2.2708 11 7 5.3186 -4.1070 -2.9401 12 14 4.5289 -6.6915 -2.3262 13 1 3.2612 -7.2293 -2.8820 14 1 5.6642 -7.1093 -3.1874 15 1 4.7301 -7.2187 -0.9525 16 6 2.8612 -1.8465 0.7371 17 7 2.0300 -0.7140 1.1840 18 6 1.7753 -0.3844 2.4658 19 8 1.0013 0.5187 2.7191 20 6 2.4349 -1.1189 3.5609 21 6 3.7463 -1.5499 3.4246 22 6 4.3741 -2.2495 4.4499 23 9 5.6520 -2.6583 4.2911 24 6 3.7191 -2.5278 5.6151 25 6 2.3909 -2.1086 5.7930 26 6 1.6921 -2.3828 6.9843 27 6 0.4018 -1.9460 7.0902 28 6 -0.1842 -1.2504 6.0359 29 7 0.4714 -0.9974 4.9277 30 6 1.7332 -1.3958 4.7614 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5081 -0.8933 33 1 -0.3633 -1.0277 0.0064 34 1 1.2919 -0.7891 -2.0201 35 1 2.9657 -0.2833 -1.6181 36 1 4.0381 -2.3015 -1.9758 37 1 6.0080 -4.5453 -3.4630 38 1 3.9123 -1.5588 0.7117 39 1 2.7177 -2.7048 1.3934 40 1 4.2852 -1.3414 2.5121 41 1 4.2228 -3.0718 6.4005 42 1 2.1631 -2.9231 7.7922 43 1 -0.1624 -2.1392 7.9906 44 1 -1.2046 -0.9104 6.1327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989514176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:05 Heat of formation + Delta-G solvation = 1.763148 kcal Electronic energy + Delta-G solvation = -29864.085084 eV Core-core repulsion = 25696.477412 eV Total energy + Delta-G solvation = -4167.607672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.09273 -41.20221 -39.78325 -37.39952 -36.84416 -34.19837 -33.79580 -31.99833 -31.33169 -30.50371 -29.90897 -28.33264 -25.64615 -24.98013 -24.07880 -23.80129 -23.45215 -21.55289 -20.24802 -19.35043 -18.72731 -17.68284 -17.40736 -17.35257 -16.58622 -15.90824 -15.79645 -15.48022 -15.34741 -15.09756 -14.54120 -14.44176 -14.28536 -13.89270 -13.57203 -13.39096 -13.34653 -13.17192 -12.96960 -12.92156 -12.52907 -12.42658 -11.97844 -11.79721 -11.68031 -11.50923 -11.19934 -10.99370 -10.86316 -10.70014 -10.65284 -10.29298 -10.03759 -9.91738 -9.78125 -9.42385 -9.06787 -8.97788 -8.52367 -8.32814 -7.12153 -5.87765 -3.18797 -0.14717 0.45445 1.49311 2.37288 2.97563 3.17028 3.38611 3.43808 3.44161 3.82226 3.89543 4.02384 4.19326 4.39253 4.50300 4.58069 4.59148 4.66285 4.89910 4.95274 5.12239 5.18258 5.26712 5.32488 5.41022 5.47353 5.57675 5.60821 5.64843 5.66054 5.71619 5.84765 5.87632 5.88852 6.10242 6.10514 6.18627 6.21249 6.30029 6.45260 6.47357 6.54815 6.66553 6.83062 7.60693 7.70230 7.78678 8.29446 8.37599 9.41820 9.94743 10.29891 11.34034 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.003689 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.836119 B = 7587.892360 C = 9151.600850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.175 3.825 6 H 0.069 0.931 7 N -0.711 5.711 8 C -0.251 4.251 9 H 0.072 0.928 10 C -0.006 4.006 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.067 3.933 17 N -0.606 5.606 18 C 0.576 3.424 19 O -0.513 6.513 20 C -0.066 4.066 21 C -0.098 4.098 22 C 0.107 3.893 23 F -0.129 7.129 24 C -0.120 4.120 25 C -0.086 4.086 26 C -0.058 4.058 27 C -0.169 4.169 28 C 0.130 3.870 29 N -0.443 5.443 30 C 0.151 3.849 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.387 0.613 37 H 0.258 0.742 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.157 0.843 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 5.961 18.806 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.062 3.938 6 H 0.087 0.913 7 N -0.350 5.350 8 C -0.382 4.382 9 H 0.090 0.910 10 C -0.203 4.203 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.058 4.058 17 N -0.340 5.340 18 C 0.363 3.637 19 O -0.389 6.389 20 C -0.069 4.069 21 C -0.118 4.118 22 C 0.088 3.912 23 F -0.107 7.107 24 C -0.140 4.140 25 C -0.088 4.088 26 C -0.084 4.084 27 C -0.189 4.189 28 C -0.042 4.042 29 N -0.149 5.149 30 C 0.028 3.972 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.174 0.826 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.803 6.715 18.198 20.908 hybrid contribution 1.167 -1.572 0.558 2.036 sum -6.637 5.143 18.756 20.550 Atomic orbital electron populations 1.22144 0.94851 1.02391 1.02543 1.21514 0.94614 0.95725 0.84295 0.91109 1.23047 1.01758 0.97080 0.95844 1.21319 0.92837 0.91361 0.88265 0.91334 1.42314 1.33383 1.04039 1.55269 1.19206 1.11337 0.82495 1.25130 0.91045 1.24754 0.97868 0.97966 0.99690 1.69644 1.18873 1.34313 1.34780 0.86275 0.77142 0.85311 0.77490 1.21115 1.21589 1.21125 1.23723 0.94649 0.87277 1.00194 1.48517 1.50302 1.30964 1.04243 1.17360 0.81727 0.83620 0.81007 1.90778 1.34384 1.30668 1.83029 1.19675 0.93369 0.99800 0.94105 1.21736 0.94729 0.95868 0.99518 1.17160 0.80197 0.98917 0.94948 1.91573 1.35029 1.88237 1.95887 1.21030 0.94061 1.01518 0.97388 1.18468 0.94451 1.00298 0.95604 1.21420 0.94360 0.96856 0.95797 1.21962 0.96081 0.99950 1.00885 1.23129 0.99954 0.93005 0.88132 1.68150 1.06553 1.16986 1.23231 1.18544 0.90837 0.95440 0.92387 0.91089 0.92056 0.92497 0.90037 0.90529 0.77814 0.93243 0.91168 0.91289 0.82562 0.83572 0.83967 0.84199 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.05 37.16 0.34 -1.96 16 2 C 0.14 2.13 3.53 -66.95 -0.24 1.89 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.15 6.14 -24.90 -0.15 -2.30 16 5 C 0.17 3.25 3.73 -65.66 -0.24 3.01 16 6 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 7 N -0.71 -16.55 5.24 -51.24 -0.27 -16.82 16 8 C -0.25 -6.58 9.96 -15.06 -0.15 -6.73 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 12 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.07 1.15 4.91 -2.41 -0.01 1.13 16 17 N -0.61 -9.82 3.08 -164.13 -0.51 -10.33 16 18 C 0.58 9.87 7.17 -12.51 -0.09 9.79 16 19 O -0.51 -9.91 14.75 5.27 0.08 -9.83 16 20 C -0.07 -1.01 5.44 -104.62 -0.57 -1.58 16 21 C -0.10 -1.36 8.11 -39.08 -0.32 -1.68 16 22 C 0.11 1.36 7.22 -39.88 -0.29 1.07 16 23 F -0.13 -1.72 17.24 2.25 0.04 -1.68 16 24 C -0.12 -1.28 9.71 -39.38 -0.38 -1.67 16 25 C -0.09 -0.99 5.74 -106.83 -0.61 -1.61 16 26 C -0.06 -0.49 9.89 -39.19 -0.39 -0.88 16 27 C -0.17 -1.31 10.03 -39.79 -0.40 -1.71 16 28 C 0.13 1.35 11.15 -17.44 -0.19 1.15 16 29 N -0.44 -6.51 9.03 -10.76 -0.10 -6.61 16 30 C 0.15 2.20 6.58 -84.57 -0.56 1.65 16 31 H 0.07 1.12 6.59 -51.93 -0.34 0.78 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.19 7.83 -51.93 -0.41 0.78 16 35 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 36 H 0.39 9.57 7.76 -40.82 -0.32 9.25 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.07 1.20 6.93 -51.93 -0.36 0.84 16 39 H 0.07 1.20 7.25 -51.93 -0.38 0.82 16 40 H 0.16 2.15 5.74 -52.49 -0.30 1.85 16 41 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -32.18 368.12 -9.30 -41.48 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.44 Total: 8.44 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.35 Total: -0.68 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.15 Total: -59.86 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.18 -9.30 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989514176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.241 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds