Wall clock time and date at job start Wed Apr 1 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99942 * 2 1 4 4 C 1.54322 * 109.88441 * 238.89980 * 2 1 3 5 5 C 1.55159 * 102.94374 * 262.77551 * 4 2 1 6 6 H 1.09002 * 111.00221 * 82.57219 * 5 4 2 7 7 N 1.46494 * 111.00359 * 206.38614 * 5 4 2 8 8 C 1.36942 * 120.00011 * 205.00344 * 7 5 4 9 9 H 1.07999 * 119.99791 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00183 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99754 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00072 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47452 * 59.99690 * 12 10 8 14 14 H 1.48503 * 109.47136 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47009 * 299.99854 * 12 10 8 16 16 C 1.55130 * 101.48531 * 324.33621 * 5 4 2 17 17 N 1.47022 * 109.88057 * 121.09288 * 2 1 3 18 18 C 1.34778 * 125.65078 * 300.44284 * 17 2 1 19 19 O 1.21610 * 119.99936 * 5.24242 * 18 17 2 20 20 C 1.47438 * 120.00314 * 185.23625 * 18 17 2 21 21 C 1.38718 * 120.31483 * 36.55791 * 20 18 17 22 22 C 1.39101 * 120.70097 * 180.33606 * 21 20 18 23 23 F 1.35101 * 119.50120 * 179.97438 * 22 21 20 24 24 C 1.36536 * 120.99710 * 359.88957 * 22 21 20 25 25 C 1.40408 * 120.07414 * 0.08399 * 24 22 21 26 26 C 1.40813 * 121.23056 * 179.97438 * 25 24 22 27 27 C 1.36628 * 118.16013 * 180.02562 * 26 25 24 28 28 C 1.39243 * 119.90104 * 359.97438 * 27 26 25 29 29 N 1.31225 * 121.69894 * 0.02562 * 28 27 26 30 30 C 1.33359 * 121.36140 * 359.95437 * 29 28 27 31 31 H 1.08997 * 109.47408 * 300.35818 * 1 2 3 32 32 H 1.09000 * 109.46938 * 60.36562 * 1 2 3 33 33 H 1.09003 * 109.46770 * 180.35825 * 1 2 3 34 34 H 1.08998 * 110.72314 * 21.14396 * 4 2 1 35 35 H 1.08999 * 110.71982 * 144.41498 * 4 2 1 36 36 H 0.96998 * 120.00395 * 25.00391 * 7 5 4 37 37 H 0.96998 * 120.00062 * 180.02562 * 11 10 8 38 38 H 1.08997 * 110.49538 * 278.45127 * 16 5 4 39 39 H 1.09000 * 110.34136 * 156.05840 * 16 5 4 40 40 H 1.08001 * 119.65035 * 0.24466 * 21 20 18 41 41 H 1.08007 * 119.96107 * 180.02562 * 24 22 21 42 42 H 1.08002 * 120.92100 * 0.04699 * 26 25 24 43 43 H 1.07998 * 120.05141 * 180.02562 * 27 26 25 44 44 H 1.07992 * 119.15043 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 2.3519 -2.1695 -0.6922 6 1 1.4452 -2.7737 -0.6602 7 7 3.3931 -2.8316 -1.4819 8 6 3.4559 -4.1990 -1.5229 9 1 2.7381 -4.7892 -0.9728 10 6 4.4428 -4.8264 -2.2708 11 7 5.3186 -4.1070 -2.9401 12 14 4.5289 -6.6915 -2.3262 13 1 3.2612 -7.2293 -2.8820 14 1 5.6642 -7.1093 -3.1874 15 1 4.7301 -7.2187 -0.9525 16 6 2.8612 -1.8465 0.7371 17 7 2.0300 -0.7140 1.1840 18 6 1.7753 -0.3844 2.4658 19 8 1.0013 0.5187 2.7191 20 6 2.4349 -1.1189 3.5609 21 6 3.7463 -1.5499 3.4246 22 6 4.3741 -2.2495 4.4499 23 9 5.6520 -2.6583 4.2911 24 6 3.7191 -2.5278 5.6151 25 6 2.3909 -2.1086 5.7930 26 6 1.6921 -2.3828 6.9843 27 6 0.4018 -1.9460 7.0902 28 6 -0.1842 -1.2504 6.0359 29 7 0.4714 -0.9974 4.9277 30 6 1.7332 -1.3958 4.7614 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5081 -0.8933 33 1 -0.3633 -1.0277 0.0064 34 1 1.2919 -0.7891 -2.0201 35 1 2.9657 -0.2833 -1.6181 36 1 4.0381 -2.3015 -1.9758 37 1 6.0080 -4.5453 -3.4630 38 1 3.9123 -1.5588 0.7117 39 1 2.7177 -2.7048 1.3934 40 1 4.2852 -1.3414 2.5121 41 1 4.2228 -3.0718 6.4005 42 1 2.1631 -2.9231 7.7922 43 1 -0.1624 -2.1392 7.9906 44 1 -1.2046 -0.9104 6.1327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989514176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:04 Heat of formation + Delta-G solvation = -17.756530 kcal Electronic energy + Delta-G solvation = -29864.931520 eV Core-core repulsion = 25696.477412 eV Total energy + Delta-G solvation = -4168.454109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.06743 -42.15904 -41.00319 -38.74374 -37.82436 -35.99233 -34.69927 -33.33852 -32.95312 -31.41306 -30.87943 -29.99328 -26.91897 -26.17933 -25.59472 -24.80167 -24.52022 -22.82188 -21.66072 -20.45470 -19.76641 -19.32073 -18.64348 -18.36404 -17.72896 -17.08251 -16.77197 -16.74806 -16.57033 -16.19580 -15.98153 -15.56852 -15.31715 -15.13296 -15.06806 -14.68595 -14.57207 -14.40437 -14.25126 -14.02028 -13.78325 -13.39087 -13.24005 -13.07405 -13.00882 -12.77593 -12.64112 -12.53739 -12.30559 -12.15725 -12.08321 -11.74962 -11.64204 -11.47317 -11.15932 -10.91425 -10.36524 -9.88319 -9.74745 -9.40047 -9.06084 -7.95655 -5.25771 -1.03463 -0.41862 0.65870 1.42718 1.49417 1.50842 1.56971 1.75008 1.99623 2.55737 2.91708 2.97427 3.10711 3.23097 3.35081 3.54656 3.60089 3.70296 3.81948 3.84513 3.95198 3.98175 4.08829 4.18489 4.25167 4.34705 4.43658 4.48652 4.49380 4.54910 4.68100 4.69457 4.72338 4.79320 4.88275 4.98746 5.01557 5.12541 5.15193 5.22200 5.30888 5.37834 5.47148 5.52885 5.68062 6.25112 6.41411 6.92133 7.07001 7.33307 8.03251 8.28817 9.26732 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.003689 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.836119 B = 7587.892360 C = 9151.600850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.169 3.831 6 H 0.063 0.937 7 N -0.720 5.720 8 C -0.248 4.248 9 H 0.075 0.925 10 C -0.064 4.064 11 N -0.964 5.964 12 Si 0.967 3.033 13 H -0.278 1.278 14 H -0.296 1.296 15 H -0.279 1.279 16 C 0.085 3.915 17 N -0.606 5.606 18 C 0.575 3.425 19 O -0.541 6.541 20 C -0.100 4.100 21 C -0.097 4.097 22 C 0.080 3.920 23 F -0.137 7.137 24 C -0.088 4.088 25 C -0.101 4.101 26 C -0.047 4.047 27 C -0.159 4.159 28 C 0.130 3.870 29 N -0.500 5.500 30 C 0.130 3.870 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.379 0.621 37 H 0.252 0.748 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.146 0.854 41 H 0.186 0.814 42 H 0.187 0.813 43 H 0.185 0.815 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 4.904 21.795 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.037 3.963 3 H 0.096 0.904 4 C -0.163 4.163 5 C 0.058 3.942 6 H 0.081 0.919 7 N -0.359 5.359 8 C -0.379 4.379 9 H 0.093 0.907 10 C -0.257 4.257 11 N -0.613 5.613 12 Si 0.796 3.204 13 H -0.204 1.204 14 H -0.222 1.222 15 H -0.205 1.205 16 C -0.040 4.040 17 N -0.339 5.339 18 C 0.364 3.636 19 O -0.419 6.419 20 C -0.104 4.104 21 C -0.118 4.118 22 C 0.060 3.940 23 F -0.115 7.115 24 C -0.108 4.108 25 C -0.103 4.103 26 C -0.073 4.073 27 C -0.178 4.178 28 C -0.042 4.042 29 N -0.208 5.208 30 C 0.008 3.992 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.212 0.788 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.164 0.836 41 H 0.203 0.797 42 H 0.204 0.796 43 H 0.203 0.797 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.950 5.668 21.216 23.714 hybrid contribution 1.352 -1.193 -0.181 1.812 sum -7.598 4.475 21.035 22.809 Atomic orbital electron populations 1.22060 0.93974 1.01986 1.02953 1.21620 0.95286 0.95870 0.83561 0.90394 1.22942 1.02306 0.94746 0.96292 1.21437 0.91362 0.92686 0.88702 0.91929 1.42389 1.34235 1.03293 1.55962 1.19549 1.10611 0.83943 1.23817 0.90682 1.25472 0.98131 1.01859 1.00265 1.69787 1.19742 1.35645 1.36175 0.85318 0.76903 0.80759 0.77418 1.20427 1.22206 1.20502 1.23338 0.94437 0.87451 0.98817 1.48525 1.50132 1.30665 1.04621 1.17701 0.81253 0.83269 0.81391 1.90737 1.35828 1.31926 1.83431 1.19602 0.94139 1.02007 0.94602 1.21642 0.94372 0.96044 0.99745 1.17225 0.80320 1.00570 0.95842 1.91549 1.35436 1.88499 1.96036 1.21435 0.93431 0.98980 0.96916 1.18757 0.94919 1.00333 0.96313 1.21959 0.94362 0.95767 0.95189 1.22404 0.96107 0.98006 1.01311 1.23765 1.00790 0.91914 0.87684 1.68108 1.07293 1.19554 1.25854 1.18725 0.91352 0.96321 0.92812 0.92774 0.89498 0.93210 0.88605 0.90369 0.78838 0.93889 0.91573 0.91969 0.83633 0.79696 0.79599 0.79746 0.79890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.05 71.98 0.65 -3.64 16 2 C 0.14 4.21 3.53 45.34 0.16 4.37 16 3 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.12 -3.84 6.14 31.78 0.20 -3.64 16 5 C 0.17 6.39 3.73 46.46 0.17 6.56 16 6 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 7 N -0.72 -34.13 5.24 -316.01 -1.66 -35.79 16 8 C -0.25 -13.11 9.96 84.03 0.84 -12.28 16 9 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 10 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 11 N -0.96 -56.76 13.06 21.65 0.28 -56.48 16 12 Si 0.97 44.71 29.55 68.60 2.03 46.74 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 C 0.09 3.01 4.91 86.93 0.43 3.44 16 17 N -0.61 -20.35 3.08 -791.45 -2.44 -22.79 16 18 C 0.57 20.68 7.17 86.67 0.62 21.30 16 19 O -0.54 -21.88 14.75 -4.06 -0.06 -21.94 16 20 C -0.10 -3.21 5.44 -19.86 -0.11 -3.32 16 21 C -0.10 -2.84 8.11 22.59 0.18 -2.65 16 22 C 0.08 2.01 7.22 22.08 0.16 2.17 16 23 F -0.14 -3.63 17.24 44.97 0.78 -2.85 16 24 C -0.09 -1.68 9.71 22.40 0.22 -1.46 16 25 C -0.10 -2.11 5.74 -21.29 -0.12 -2.23 16 26 C -0.05 -0.58 9.89 22.52 0.22 -0.36 16 27 C -0.16 -1.78 10.03 22.13 0.22 -1.56 16 28 C 0.13 2.42 11.15 85.03 0.95 3.37 16 29 N -0.50 -14.68 9.03 -187.95 -1.70 -16.37 16 30 C 0.13 3.81 6.58 40.62 0.27 4.07 16 31 H 0.05 1.73 6.59 -2.39 -0.02 1.72 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 2.70 7.83 -2.39 -0.02 2.68 16 35 H 0.08 2.42 8.00 -2.39 -0.02 2.40 16 36 H 0.38 19.17 7.76 -92.71 -0.72 18.45 16 37 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.07 2.39 6.93 -2.39 -0.02 2.37 16 39 H 0.06 2.26 7.25 -2.39 -0.02 2.25 16 40 H 0.15 4.35 5.74 -2.91 -0.02 4.33 16 41 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.19 0.43 8.06 -2.91 -0.02 0.40 16 44 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -73.06 368.12 3.09 -69.97 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.33 Total: 28.43 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 5.52 Total: 11.07 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -5.51 Total: -131.42 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.85 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -73.06 3.09 -69.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989514176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.215 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds