Wall clock time and date at job start Wed Apr 1 2020 02:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34783 * 120.00293 * 2 1 4 4 O 1.21586 * 120.00009 * 184.44996 * 3 2 1 5 5 C 1.47575 * 119.99746 * 4.46211 * 3 2 1 6 6 C 1.38661 * 120.41560 * 309.77481 * 5 3 2 7 7 C 1.39255 * 120.71741 * 179.97438 * 6 5 3 8 8 F 1.35099 * 119.42793 * 180.02562 * 7 6 5 9 9 C 1.36550 * 121.13325 * 359.74039 * 7 6 5 10 10 C 1.40288 * 119.91817 * 0.51464 * 9 7 6 11 11 C 1.40715 * 122.07998 * 179.77802 * 10 9 7 12 12 C 1.36240 * 118.67128 * 179.71524 * 11 10 9 13 13 N 1.32528 * 121.83380 * 0.02562 * 12 11 10 14 14 C 1.31328 * 122.72150 * 0.02562 * 13 12 11 15 15 C 1.40109 * 119.92958 * 359.97438 * 14 13 12 16 16 C 1.46502 * 120.00145 * 180.02562 * 2 1 3 17 17 C 1.53782 * 113.61448 * 39.13344 * 16 2 1 18 18 C 1.53951 * 87.02028 * 220.05050 * 17 16 2 19 19 N 1.46497 * 113.53630 * 270.80508 * 18 17 16 20 20 C 1.36930 * 120.00348 * 252.49334 * 19 18 17 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99954 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00281 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00048 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47359 * 59.99878 * 24 22 20 26 26 H 1.48497 * 109.47177 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47222 * 299.99823 * 24 22 20 28 28 C 1.53779 * 87.11178 * 25.36349 * 18 17 16 29 29 H 1.08992 * 109.47494 * 93.12129 * 1 2 3 30 30 H 1.09000 * 109.47125 * 213.12425 * 1 2 3 31 31 H 1.09007 * 109.47246 * 333.12219 * 1 2 3 32 32 H 1.08001 * 119.64018 * 359.95791 * 6 5 3 33 33 H 1.08005 * 120.03628 * 180.02562 * 9 7 6 34 34 H 1.08007 * 120.66088 * 359.69763 * 11 10 9 35 35 H 1.07997 * 119.08431 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.03584 * 180.02562 * 14 13 12 37 37 H 1.09002 * 112.85372 * 170.32638 * 16 2 1 38 38 H 1.09009 * 113.61080 * 334.57291 * 17 16 2 39 39 H 1.09000 * 113.61500 * 105.46804 * 17 16 2 40 40 H 1.09003 * 113.74452 * 139.94120 * 18 17 16 41 41 H 0.97010 * 119.99557 * 72.49938 * 19 18 17 42 42 H 0.97000 * 120.00138 * 179.97438 * 23 22 20 43 43 H 1.09001 * 113.61181 * 220.09017 * 28 18 17 44 44 H 1.09000 * 113.61588 * 89.18547 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3520 1.1687 -0.0817 5 6 1.4044 2.4433 0.0994 6 6 0.3315 2.7030 -0.7398 7 6 -0.3663 3.9048 -0.6510 8 9 -1.4079 4.1304 -1.4813 9 6 -0.0195 4.8566 0.2646 10 6 1.0634 4.6349 1.1284 11 6 1.4629 5.5860 2.0854 12 6 2.5210 5.2960 2.8931 13 7 3.1781 4.1489 2.7994 14 6 2.8605 3.2178 1.9294 15 6 1.7867 3.4181 1.0519 16 6 2.1975 -1.2687 -0.0006 17 6 1.5590 -2.3483 -0.8903 18 6 1.9074 -3.3558 0.2204 19 7 3.2377 -3.9515 0.0736 20 6 3.3637 -5.2575 -0.3182 21 1 2.4824 -5.8483 -0.5195 22 6 4.6243 -5.8220 -0.4567 23 7 5.6985 -5.1018 -0.2119 24 14 4.7962 -7.6034 -0.9919 25 1 4.1748 -7.7808 -2.3290 26 1 6.2355 -7.9618 -1.0641 27 1 4.1151 -8.4836 -0.0089 28 6 1.8673 -2.1711 1.2001 29 1 -0.3634 -0.0560 -1.0260 30 1 -0.3633 -0.8607 0.5616 31 1 -0.3634 0.9167 0.4646 32 1 0.0341 1.9653 -1.4703 33 1 -0.5733 5.7823 0.3183 34 1 0.9412 6.5273 2.1776 35 1 2.8330 6.0210 3.6302 36 1 3.4258 2.2984 1.8910 37 1 3.2666 -1.1402 -0.1693 38 1 0.4873 -2.2146 -1.0382 39 1 2.0975 -2.5208 -1.8222 40 1 1.1290 -4.0975 0.4001 41 1 4.0293 -3.4207 0.2542 42 1 6.5793 -5.4964 -0.3083 43 1 2.6546 -2.2008 1.9534 44 1 0.8802 -1.9889 1.6248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998788913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:15 Heat of formation + Delta-G solvation = 24.656984 kcal Electronic energy + Delta-G solvation = -29134.967320 eV Core-core repulsion = 24968.352399 eV Total energy + Delta-G solvation = -4166.614921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.45662 -41.49841 -40.06765 -38.24236 -37.30452 -35.01699 -33.54125 -32.87228 -31.30541 -30.36028 -29.65705 -27.29339 -25.62373 -25.17254 -24.47760 -24.00048 -23.64236 -22.35190 -20.12417 -18.88929 -18.33227 -18.01380 -17.73597 -17.42304 -16.77894 -16.37141 -16.22407 -16.05586 -15.45610 -15.20820 -14.91930 -14.72003 -14.42927 -14.15988 -14.04902 -13.86339 -13.40712 -13.14005 -12.97922 -12.84139 -12.78674 -12.52223 -12.16020 -12.04098 -11.94406 -11.89510 -11.57140 -10.87742 -10.81922 -10.65908 -10.32288 -10.21581 -10.05578 -9.83915 -9.71995 -9.66598 -9.42612 -8.93372 -8.61330 -8.54300 -7.04154 -5.80952 -3.11701 -0.35638 0.30477 1.22735 2.21263 2.57589 2.84823 3.42105 3.46487 3.47991 3.54414 3.63965 3.89127 4.05578 4.26112 4.29736 4.37820 4.39017 4.54088 4.73167 4.86996 4.97633 5.04054 5.06196 5.08951 5.25908 5.32108 5.33313 5.36682 5.41891 5.44818 5.53426 5.55442 5.71486 5.81923 5.91858 6.02011 6.10294 6.11685 6.26795 6.33418 6.47836 6.64692 6.69101 6.94004 7.30391 7.63278 7.66491 7.95904 8.36866 9.47664 10.03386 10.37309 11.40912 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002431 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.427668 B =11513.906907 C =12573.431591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.589 5.589 3 C 0.552 3.448 4 O -0.518 6.518 5 C -0.049 4.049 6 C -0.126 4.126 7 C 0.123 3.877 8 F -0.131 7.131 9 C -0.137 4.137 10 C -0.001 4.001 11 C -0.163 4.163 12 C 0.090 3.910 13 N -0.485 5.485 14 C 0.168 3.832 15 C -0.095 4.095 16 C 0.122 3.878 17 C -0.182 4.182 18 C 0.173 3.827 19 N -0.705 5.705 20 C -0.248 4.248 21 H 0.072 0.928 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.168 4.168 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.174 0.826 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.387 0.613 42 H 0.258 0.742 43 H 0.073 0.927 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.141 22.815 2.996 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.320 5.320 3 C 0.338 3.662 4 O -0.395 6.395 5 C -0.054 4.054 6 C -0.145 4.145 7 C 0.103 3.897 8 F -0.109 7.109 9 C -0.156 4.156 10 C -0.006 4.006 11 C -0.183 4.183 12 C -0.053 4.053 13 N -0.193 5.193 14 C -0.003 4.003 15 C -0.098 4.098 16 C 0.021 3.979 17 C -0.224 4.224 18 C 0.060 3.940 19 N -0.343 5.343 20 C -0.379 4.379 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.209 4.209 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.175 0.825 36 H 0.191 0.809 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.221 0.779 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.814 22.583 3.509 27.235 hybrid contribution -0.691 -0.414 -1.142 1.397 sum -15.505 22.168 2.367 27.156 Atomic orbital electron populations 1.22000 0.79842 1.03568 1.02184 1.47932 1.06951 1.05936 1.71170 1.18084 0.87266 0.83216 0.77628 1.90872 1.12892 1.86792 1.48908 1.19854 0.94835 0.94855 0.95861 1.21445 0.95093 0.97034 1.00922 1.17212 0.86917 0.94672 0.90915 1.91559 1.54863 1.94745 1.69778 1.21002 0.98380 1.00180 0.96073 1.17777 0.94152 0.93250 0.95427 1.21866 0.99640 0.99987 0.96768 1.22376 0.91711 0.93924 0.97320 1.67609 1.29064 1.01804 1.20807 1.23535 0.91348 0.97887 0.87499 1.18788 0.98595 0.94074 0.98376 1.22915 0.97937 0.78920 0.98156 1.24351 0.99541 0.97586 1.00897 1.20923 0.89985 0.91278 0.91808 1.42210 1.00961 1.11117 1.80055 1.19207 0.92336 0.87703 1.38646 0.90980 1.24791 0.95423 0.98348 1.02087 1.69658 0.97249 1.35937 1.54785 0.86244 0.76682 0.84610 0.78467 1.21193 1.21647 1.21168 1.23981 1.01551 0.97573 0.97746 0.92069 0.90121 0.90975 0.83200 0.83405 0.83926 0.82502 0.80874 0.85974 0.90924 0.90757 0.91277 0.77895 0.93250 0.90835 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 7.67 59.84 0.46 1.06 16 2 N -0.59 -7.60 3.08 -174.22 -0.54 -8.14 16 3 C 0.55 7.77 6.63 -12.45 -0.08 7.69 16 4 O -0.52 -9.24 14.97 5.29 0.08 -9.16 16 5 C -0.05 -0.55 4.88 -104.67 -0.51 -1.06 16 6 C -0.13 -1.15 7.59 -39.05 -0.30 -1.45 16 7 C 0.12 1.04 7.22 -39.81 -0.29 0.75 16 8 F -0.13 -1.12 17.24 2.25 0.04 -1.08 16 9 C -0.14 -1.05 9.75 -39.42 -0.38 -1.43 16 10 C 0.00 -0.01 5.74 -106.84 -0.61 -0.62 16 11 C -0.16 -1.24 9.88 -39.37 -0.39 -1.63 16 12 C 0.09 0.81 11.07 -17.97 -0.20 0.61 16 13 N -0.48 -5.92 10.30 -13.22 -0.14 -6.05 16 14 C 0.17 2.13 10.46 -17.07 -0.18 1.95 16 15 C -0.10 -1.09 5.76 -106.59 -0.61 -1.71 16 16 C 0.12 1.94 4.10 -67.12 -0.28 1.66 16 17 C -0.18 -2.92 7.37 -25.83 -0.19 -3.11 16 18 C 0.17 3.24 4.57 -67.03 -0.31 2.94 16 19 N -0.71 -17.22 5.31 -52.55 -0.28 -17.50 16 20 C -0.25 -6.73 9.97 -15.06 -0.15 -6.88 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 24 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C -0.17 -2.63 7.38 -25.92 -0.19 -2.82 16 29 H 0.06 0.47 7.58 -51.93 -0.39 0.07 16 30 H 0.08 0.67 6.47 -51.93 -0.34 0.34 16 31 H 0.07 0.55 5.72 -51.92 -0.30 0.25 16 32 H 0.15 1.17 6.68 -52.49 -0.35 0.82 16 33 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.17 2.38 6.35 -52.49 -0.33 2.05 16 37 H 0.12 2.34 7.20 -51.93 -0.37 1.96 16 38 H 0.07 0.95 6.86 -51.92 -0.36 0.60 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.39 10.18 7.90 -40.82 -0.32 9.85 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.08 1.01 6.78 -51.93 -0.35 0.66 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -32.51 366.61 -9.11 -41.62 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.19 Total: 9.34 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -4.31 Total: -4.43 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.23 Total: -58.89 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.51 -9.11 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998788913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.277 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds