Wall clock time and date at job start Wed Apr 1 2020 02:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34783 * 120.00293 * 2 1 4 4 O 1.21586 * 120.00009 * 184.44996 * 3 2 1 5 5 C 1.47575 * 119.99746 * 4.46211 * 3 2 1 6 6 C 1.38661 * 120.41560 * 309.77481 * 5 3 2 7 7 C 1.39255 * 120.71741 * 179.97438 * 6 5 3 8 8 F 1.35099 * 119.42793 * 180.02562 * 7 6 5 9 9 C 1.36550 * 121.13325 * 359.74039 * 7 6 5 10 10 C 1.40288 * 119.91817 * 0.51464 * 9 7 6 11 11 C 1.40715 * 122.07998 * 179.77802 * 10 9 7 12 12 C 1.36240 * 118.67128 * 179.71524 * 11 10 9 13 13 N 1.32528 * 121.83380 * 0.02562 * 12 11 10 14 14 C 1.31328 * 122.72150 * 0.02562 * 13 12 11 15 15 C 1.40109 * 119.92958 * 359.97438 * 14 13 12 16 16 C 1.46502 * 120.00145 * 180.02562 * 2 1 3 17 17 C 1.53782 * 113.61448 * 39.13344 * 16 2 1 18 18 C 1.53951 * 87.02028 * 220.05050 * 17 16 2 19 19 N 1.46497 * 113.53630 * 270.80508 * 18 17 16 20 20 C 1.36930 * 120.00348 * 252.49334 * 19 18 17 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99954 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00281 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00048 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47359 * 59.99878 * 24 22 20 26 26 H 1.48497 * 109.47177 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47222 * 299.99823 * 24 22 20 28 28 C 1.53779 * 87.11178 * 25.36349 * 18 17 16 29 29 H 1.08992 * 109.47494 * 93.12129 * 1 2 3 30 30 H 1.09000 * 109.47125 * 213.12425 * 1 2 3 31 31 H 1.09007 * 109.47246 * 333.12219 * 1 2 3 32 32 H 1.08001 * 119.64018 * 359.95791 * 6 5 3 33 33 H 1.08005 * 120.03628 * 180.02562 * 9 7 6 34 34 H 1.08007 * 120.66088 * 359.69763 * 11 10 9 35 35 H 1.07997 * 119.08431 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.03584 * 180.02562 * 14 13 12 37 37 H 1.09002 * 112.85372 * 170.32638 * 16 2 1 38 38 H 1.09009 * 113.61080 * 334.57291 * 17 16 2 39 39 H 1.09000 * 113.61500 * 105.46804 * 17 16 2 40 40 H 1.09003 * 113.74452 * 139.94120 * 18 17 16 41 41 H 0.97010 * 119.99557 * 72.49938 * 19 18 17 42 42 H 0.97000 * 120.00138 * 179.97438 * 23 22 20 43 43 H 1.09001 * 113.61181 * 220.09017 * 28 18 17 44 44 H 1.09000 * 113.61588 * 89.18547 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3520 1.1687 -0.0817 5 6 1.4044 2.4433 0.0994 6 6 0.3315 2.7030 -0.7398 7 6 -0.3663 3.9048 -0.6510 8 9 -1.4079 4.1304 -1.4813 9 6 -0.0195 4.8566 0.2646 10 6 1.0634 4.6349 1.1284 11 6 1.4629 5.5860 2.0854 12 6 2.5210 5.2960 2.8931 13 7 3.1781 4.1489 2.7994 14 6 2.8605 3.2178 1.9294 15 6 1.7867 3.4181 1.0519 16 6 2.1975 -1.2687 -0.0006 17 6 1.5590 -2.3483 -0.8903 18 6 1.9074 -3.3558 0.2204 19 7 3.2377 -3.9515 0.0736 20 6 3.3637 -5.2575 -0.3182 21 1 2.4824 -5.8483 -0.5195 22 6 4.6243 -5.8220 -0.4567 23 7 5.6985 -5.1018 -0.2119 24 14 4.7962 -7.6034 -0.9919 25 1 4.1748 -7.7808 -2.3290 26 1 6.2355 -7.9618 -1.0641 27 1 4.1151 -8.4836 -0.0089 28 6 1.8673 -2.1711 1.2001 29 1 -0.3634 -0.0560 -1.0260 30 1 -0.3633 -0.8607 0.5616 31 1 -0.3634 0.9167 0.4646 32 1 0.0341 1.9653 -1.4703 33 1 -0.5733 5.7823 0.3183 34 1 0.9412 6.5273 2.1776 35 1 2.8330 6.0210 3.6302 36 1 3.4258 2.2984 1.8910 37 1 3.2666 -1.1402 -0.1693 38 1 0.4873 -2.2146 -1.0382 39 1 2.0975 -2.5208 -1.8222 40 1 1.1290 -4.0975 0.4001 41 1 4.0293 -3.4207 0.2542 42 1 6.5793 -5.4964 -0.3083 43 1 2.6546 -2.2008 1.9534 44 1 0.8802 -1.9889 1.6248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998788913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:14 Heat of formation + Delta-G solvation = 3.885804 kcal Electronic energy + Delta-G solvation = -29135.868026 eV Core-core repulsion = 24968.352399 eV Total energy + Delta-G solvation = -4167.515627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.08126 -42.32824 -41.13767 -39.51203 -38.12663 -36.32138 -34.94285 -34.04547 -32.05083 -31.83527 -30.83735 -28.16413 -26.83713 -26.49031 -25.75768 -24.97841 -24.70612 -23.56241 -21.13253 -19.75172 -19.68773 -19.32046 -18.73851 -18.49520 -17.87448 -17.33392 -16.95953 -16.80037 -16.67158 -16.34182 -15.99386 -15.83052 -15.54396 -15.26286 -15.18714 -14.86631 -14.72818 -14.28282 -14.07096 -13.87023 -13.60410 -13.49761 -13.34720 -13.25986 -13.21454 -12.77857 -12.72299 -12.66342 -12.51038 -12.20796 -11.83059 -11.71123 -11.43645 -11.23164 -10.99572 -10.87235 -10.61734 -10.15642 -9.70212 -9.24951 -9.04477 -7.95222 -5.25650 -1.08932 -0.40371 0.46629 1.35458 1.47451 1.50954 1.57048 1.67183 1.88189 2.55542 2.80912 2.91122 3.13944 3.34251 3.36409 3.48722 3.59706 3.62018 3.69475 3.73331 3.82154 3.85722 4.12283 4.18411 4.25680 4.27735 4.35720 4.40249 4.56531 4.60270 4.68555 4.72894 4.74735 4.77173 4.84587 4.89392 5.02479 5.03233 5.07477 5.23066 5.28136 5.44335 5.50898 5.58760 5.64212 6.23032 6.27746 6.86538 6.92102 7.31043 8.06998 8.28426 9.28100 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002431 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.427668 B =11513.906907 C =12573.431591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.585 5.585 3 C 0.549 3.451 4 O -0.572 6.572 5 C -0.073 4.073 6 C -0.104 4.104 7 C 0.115 3.885 8 F -0.128 7.128 9 C -0.109 4.109 10 C -0.015 4.015 11 C -0.134 4.134 12 C 0.068 3.932 13 N -0.508 5.508 14 C 0.134 3.866 15 C -0.102 4.102 16 C 0.127 3.873 17 C -0.159 4.159 18 C 0.154 3.846 19 N -0.724 5.724 20 C -0.243 4.243 21 H 0.085 0.915 22 C -0.079 4.079 23 N -0.973 5.973 24 Si 0.977 3.023 25 H -0.276 1.276 26 H -0.300 1.300 27 H -0.274 1.274 28 C -0.149 4.149 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.189 0.811 35 H 0.187 0.813 36 H 0.144 0.856 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.050 0.950 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.682 25.034 2.814 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.315 5.315 3 C 0.337 3.663 4 O -0.452 6.452 5 C -0.078 4.078 6 C -0.123 4.123 7 C 0.095 3.905 8 F -0.107 7.107 9 C -0.128 4.128 10 C -0.021 4.021 11 C -0.153 4.153 12 C -0.076 4.076 13 N -0.216 5.216 14 C -0.036 4.036 15 C -0.105 4.105 16 C 0.024 3.976 17 C -0.201 4.201 18 C 0.043 3.957 19 N -0.362 5.362 20 C -0.374 4.374 21 H 0.102 0.898 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.200 1.200 28 C -0.189 4.189 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.203 0.797 34 H 0.206 0.794 35 H 0.204 0.796 36 H 0.161 0.839 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.466 24.805 3.323 31.706 hybrid contribution 0.578 -0.920 -1.053 1.513 sum -18.888 23.885 2.270 30.535 Atomic orbital electron populations 1.22359 0.76811 1.05177 1.04067 1.47915 1.08607 1.04457 1.70524 1.18571 0.86810 0.84451 0.76444 1.90838 1.15447 1.87649 1.51295 1.19475 0.96446 0.93804 0.98099 1.21563 0.93530 0.97681 0.99571 1.17154 0.87220 0.94613 0.91559 1.91577 1.54652 1.94673 1.69761 1.21357 0.96748 1.00865 0.93790 1.18038 0.94720 0.92707 0.96625 1.22348 0.98086 1.00659 0.94188 1.22913 0.92458 0.93382 0.98816 1.67502 1.30220 1.02965 1.20932 1.23141 0.92964 0.97809 0.89679 1.18836 0.98411 0.95219 0.98000 1.22432 0.96154 0.80703 0.98350 1.24147 1.01658 0.95870 0.98414 1.21253 0.87650 0.92573 0.94194 1.42426 1.02736 1.10551 1.80460 1.19682 0.92590 0.88784 1.36379 0.89763 1.25659 0.95325 1.02596 1.03560 1.69846 0.97415 1.37715 1.57361 0.85163 0.76005 0.79836 0.78458 1.20220 1.22624 1.19999 1.23849 1.02914 0.95529 0.96575 0.89908 0.88724 0.89298 0.81829 0.79667 0.79376 0.79635 0.83909 0.90542 0.86570 0.93579 0.90067 0.79789 0.94084 0.93102 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 7.67 127.77 0.98 1.83 16 2 N -0.59 -15.05 3.08 -823.36 -2.54 -17.59 16 3 C 0.55 16.30 6.63 86.71 0.58 16.87 16 4 O -0.57 -22.67 14.97 -3.99 -0.06 -22.73 16 5 C -0.07 -1.64 4.88 -19.90 -0.10 -1.74 16 6 C -0.10 -1.66 7.59 22.62 0.17 -1.49 16 7 C 0.12 1.50 7.22 22.12 0.16 1.66 16 8 F -0.13 -1.66 17.24 44.97 0.78 -0.89 16 9 C -0.11 -1.16 9.75 22.37 0.22 -0.94 16 10 C -0.02 -0.24 5.74 -21.30 -0.12 -0.36 16 11 C -0.13 -1.53 9.88 22.41 0.22 -1.31 16 12 C 0.07 1.09 11.07 84.12 0.93 2.02 16 13 N -0.51 -12.84 10.30 -195.75 -2.02 -14.85 16 14 C 0.13 3.68 10.46 85.22 0.89 4.58 16 15 C -0.10 -2.32 5.76 -21.14 -0.12 -2.44 16 16 C 0.13 4.16 4.10 45.52 0.19 4.35 16 17 C -0.16 -5.03 7.37 31.18 0.23 -4.80 16 18 C 0.15 5.74 4.57 45.58 0.21 5.95 16 19 N -0.72 -36.74 5.31 -320.18 -1.70 -38.44 16 20 C -0.24 -13.40 9.97 84.03 0.84 -12.57 16 21 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 23 N -0.97 -61.29 13.06 21.65 0.28 -61.00 16 24 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 C -0.15 -4.66 7.38 31.12 0.23 -4.43 16 29 H 0.08 0.93 7.58 -2.39 -0.02 0.91 16 30 H 0.09 1.18 6.47 -2.39 -0.02 1.17 16 31 H 0.09 1.08 5.72 -2.38 -0.01 1.07 16 32 H 0.16 2.06 6.68 -2.91 -0.02 2.05 16 33 H 0.19 0.61 8.06 -2.91 -0.02 0.58 16 34 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 35 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.14 4.63 6.35 -2.91 -0.02 4.61 16 37 H 0.08 3.25 7.20 -2.39 -0.02 3.23 16 38 H 0.12 2.65 6.86 -2.38 -0.02 2.63 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 41 H 0.37 20.87 7.90 -92.70 -0.73 20.14 16 42 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.12 2.75 6.78 -2.39 -0.02 2.73 16 Total: -1.00 -78.00 366.61 3.07 -74.93 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.33 Total: 29.12 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.97 Total: 3.04 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -5.97 Total: -131.89 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.06 Total: -22.73 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.78 Total: -0.89 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -78.00 3.07 -74.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998788913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.818 kcal (2) G-P(sol) polarization free energy of solvation -78.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds