Wall clock time and date at job start Wed Apr 1 2020 01:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30010 * 127.33403 * 2 1 4 4 O 1.20661 * 112.29961 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15418 * 359.72617 * 4 3 2 6 6 C 1.50704 * 126.82491 * 180.33290 * 5 4 3 7 7 F 1.39897 * 109.47657 * 30.13397 * 6 5 4 8 8 F 1.39896 * 109.47138 * 150.14049 * 6 5 4 9 9 C 1.37356 * 106.34525 * 0.44269 * 5 4 3 10 10 C 1.47396 * 128.56771 * 179.85415 * 9 5 4 11 11 O 1.21603 * 120.00332 * 269.68587 * 10 9 5 12 12 N 1.34777 * 119.99333 * 89.95453 * 10 9 5 13 13 C 1.46506 * 119.99759 * 179.72622 * 12 10 9 14 14 C 1.52993 * 109.47428 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49768 * 54.99449 * 14 13 12 16 16 C 1.53038 * 109.49905 * 175.06559 * 14 13 12 17 17 C 1.53041 * 109.53729 * 181.31584 * 16 14 13 18 18 C 1.53197 * 109.31054 * 298.63334 * 17 16 14 19 19 N 1.46926 * 108.77672 * 54.63731 * 18 17 16 20 20 C 1.36934 * 120.62942 * 126.43648 * 19 18 17 21 21 H 1.08004 * 119.99667 * 207.66673 * 20 19 18 22 22 C 1.38810 * 120.00574 * 27.66015 * 20 19 18 23 23 N 1.31620 * 119.99861 * 17.36560 * 22 20 19 24 24 Si 1.86797 * 120.00098 * 197.36665 * 22 20 19 25 25 H 1.48497 * 109.47303 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47276 * 120.00108 * 24 22 20 27 27 H 1.48501 * 109.46962 * 239.99606 * 24 22 20 28 28 C 1.46929 * 118.76025 * 306.41170 * 19 18 17 29 29 H 1.09005 * 109.46778 * 270.03763 * 1 2 3 30 30 H 1.08997 * 109.46779 * 30.03655 * 1 2 3 31 31 H 1.09001 * 109.47067 * 150.03685 * 1 2 3 32 32 H 1.09004 * 109.46713 * 270.13616 * 6 5 4 33 33 H 0.96999 * 120.00452 * 359.73488 * 12 10 9 34 34 H 1.09007 * 109.46754 * 300.00607 * 13 12 10 35 35 H 1.09000 * 109.47075 * 59.99792 * 13 12 10 36 36 H 1.09000 * 109.45906 * 301.33153 * 16 14 13 37 37 H 1.08993 * 109.45967 * 61.30978 * 16 14 13 38 38 H 1.09000 * 109.50341 * 58.58130 * 17 16 14 39 39 H 1.09001 * 109.49900 * 178.68452 * 17 16 14 40 40 H 1.09004 * 109.58739 * 174.42255 * 18 17 16 41 41 H 1.08999 * 109.58550 * 294.84265 * 18 17 16 42 42 H 0.96997 * 120.00288 * 180.02562 * 23 22 20 43 43 H 1.08999 * 109.56291 * 293.77775 * 28 19 18 44 44 H 1.09007 * 109.61262 * 173.35856 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0068 6 6 4.9712 -1.3246 0.0162 7 9 5.9250 -0.5454 0.6798 8 9 4.8276 -2.5492 0.6771 9 6 2.3992 -1.1697 0.0005 10 6 2.0401 -2.5992 0.0006 11 8 1.8923 -3.1891 -1.0525 12 7 1.8702 -3.2512 1.1679 13 6 1.5073 -4.6706 1.1680 14 6 1.3766 -5.1635 2.6104 15 1 0.6672 -4.5337 3.1472 16 6 0.8787 -6.6106 2.6127 17 6 0.7163 -7.0937 4.0557 18 6 2.0756 -7.0491 4.7609 19 7 2.6283 -5.6934 4.6371 20 6 3.0293 -4.9994 5.7473 21 1 3.0068 -3.9196 5.7465 22 6 3.4647 -5.6836 6.8739 23 7 3.8188 -6.9478 6.7801 24 14 3.5480 -4.8102 8.5230 25 1 3.0985 -3.4041 8.3617 26 1 2.6650 -5.5031 9.4953 27 1 4.9461 -4.8293 9.0231 28 6 2.7432 -5.0962 3.2995 29 1 -0.3633 0.0007 1.0277 30 1 -0.3633 0.8896 -0.5144 31 1 -0.3633 -0.8903 -0.5133 32 1 5.2960 -1.5011 -1.0093 33 1 1.9879 -2.7806 2.0079 34 1 0.5564 -4.8025 0.6517 35 1 2.2809 -5.2434 0.6566 36 1 -0.0824 -6.6646 2.1013 37 1 1.6005 -7.2438 2.0970 38 1 0.0133 -6.4459 4.5794 39 1 0.3394 -8.1165 4.0567 40 1 1.9488 -7.2972 5.8147 41 1 2.7530 -7.7640 4.2940 42 1 4.1226 -7.4261 7.5674 43 1 3.4757 -5.6515 2.7136 44 1 3.0565 -4.0560 3.3889 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023442902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:34 Heat of formation + Delta-G solvation = -60.005300 kcal Electronic energy + Delta-G solvation = -30941.631725 eV Core-core repulsion = 26340.576347 eV Total energy + Delta-G solvation = -4601.055378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.48194 -47.50412 -45.36436 -39.80447 -37.85797 -35.03551 -34.95033 -33.42941 -32.97338 -30.52799 -30.42452 -29.21891 -27.50724 -25.95454 -25.31530 -24.13130 -22.16687 -21.36731 -20.99683 -20.63680 -19.23833 -18.64788 -18.55657 -17.58002 -17.49279 -17.44383 -16.67134 -16.16099 -15.77128 -15.23322 -14.83735 -14.37963 -14.23550 -14.10976 -13.82021 -13.77192 -13.76093 -13.67384 -13.47990 -13.38640 -13.11342 -12.83547 -12.42317 -12.33226 -12.22155 -11.97068 -11.76028 -11.35602 -11.05693 -10.78211 -10.55940 -10.51071 -10.34181 -10.24722 -10.20544 -10.12155 -9.94763 -9.63390 -9.46495 -9.12681 -8.49437 -6.70889 -5.81811 -3.24352 0.59040 1.43614 1.91297 2.16795 2.95056 3.24925 3.34722 3.43012 3.44594 3.56382 3.68154 4.12573 4.22379 4.31410 4.45680 4.65546 4.69080 5.00715 5.08202 5.09330 5.22111 5.23865 5.37636 5.41015 5.57136 5.60903 5.76211 5.84292 5.93189 6.17006 6.21982 6.31535 6.35185 6.55391 6.65284 6.72554 6.81066 6.91908 7.31328 7.36818 7.64440 7.65953 7.76374 7.93707 8.41400 9.18034 9.81433 10.37769 11.26501 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.003354 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.780246 B = 8347.152482 C = 9373.231030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.339 5.339 4 O 0.126 5.874 5 C -0.072 4.072 6 C 0.364 3.636 7 F -0.181 7.181 8 F -0.169 7.169 9 C -0.196 4.196 10 C 0.593 3.407 11 O -0.526 6.526 12 N -0.702 5.702 13 C 0.127 3.873 14 C -0.118 4.118 15 H 0.074 0.926 16 C -0.099 4.099 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.154 3.846 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.407 0.593 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.020 0.980 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 10.451 -15.249 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.042 5.042 4 O 0.059 5.941 5 C -0.137 4.137 6 C 0.308 3.692 7 F -0.162 7.162 8 F -0.150 7.150 9 C -0.203 4.203 10 C 0.376 3.624 11 O -0.402 6.402 12 N -0.352 5.352 13 C 0.004 3.996 14 C -0.139 4.139 15 H 0.092 0.908 16 C -0.137 4.137 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.383 4.383 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.217 1.217 28 C 0.027 3.973 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.166 0.834 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.497 11.202 -15.805 19.888 hybrid contribution 0.145 -0.143 1.446 1.460 sum -4.352 11.059 -14.360 18.640 Atomic orbital electron populations 1.20306 0.84380 1.04684 1.04376 1.24853 0.98949 0.85763 1.00941 1.73630 0.88944 1.23072 1.18510 1.84614 1.21606 1.20723 1.67109 1.25158 0.97192 0.85814 1.05574 1.19563 0.79805 0.75047 0.94737 1.93099 1.64700 1.74897 1.83461 1.93171 1.95587 1.42725 1.83492 1.22158 0.91900 0.96362 1.09924 1.16753 0.77684 0.83404 0.84602 1.90843 1.50762 1.67480 1.31154 1.46007 1.68829 1.12352 1.07985 1.21593 1.00585 0.79038 0.98427 1.21973 1.01471 0.97471 0.92976 0.90794 1.21336 0.99541 0.94842 0.97994 1.22172 1.01423 0.99183 0.95308 1.20804 0.88654 0.85656 1.00571 1.44047 1.71601 1.15073 1.00626 1.19190 1.37504 0.90470 0.91147 0.91740 1.25018 0.98704 0.96465 0.99313 1.70046 1.46318 1.09749 1.28384 0.86261 0.77328 0.79063 0.84346 1.20300 1.21547 1.21687 1.20896 0.91837 0.97069 0.87506 0.89068 0.89529 0.89330 0.83375 0.75796 0.91492 0.91007 0.93395 0.92381 0.92757 0.93136 0.89519 0.96432 0.93666 0.96205 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.49 36.01 0.38 -0.25 16 2 C 0.06 0.62 7.59 -79.76 -0.61 0.01 16 3 N -0.34 -4.00 12.01 34.78 0.42 -3.58 16 4 O 0.13 1.42 11.06 18.65 0.21 1.63 16 5 C -0.07 -0.78 7.13 -34.63 -0.25 -1.03 16 6 C 0.36 3.36 5.81 36.01 0.21 3.57 16 7 F -0.18 -1.87 17.32 2.25 0.04 -1.83 16 8 F -0.17 -2.05 16.11 2.25 0.04 -2.01 16 9 C -0.20 -2.32 6.19 -102.89 -0.64 -2.95 16 10 C 0.59 7.87 6.59 -12.53 -0.08 7.79 16 11 O -0.53 -8.44 17.11 5.27 0.09 -8.35 16 12 N -0.70 -8.91 5.33 -61.39 -0.33 -9.23 16 13 C 0.13 1.70 5.07 -4.04 -0.02 1.67 16 14 C -0.12 -1.83 2.37 -90.50 -0.21 -2.04 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.10 -1.53 5.17 -26.69 -0.14 -1.67 16 17 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 18 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 19 N -0.59 -14.22 3.00 -172.31 -0.52 -14.74 16 20 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 21 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 22 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 23 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 24 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.15 3.01 5.60 -3.71 -0.02 2.99 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.15 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.41 4.93 7.68 -40.82 -0.31 4.61 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -31.90 374.83 -6.65 -38.54 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.04 Total: 0.38 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.79 Total: 2.34 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.20 Total: -52.67 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.30 Total: -6.72 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.90 -6.65 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023442902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.462 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds