Wall clock time and date at job start Wed Apr 1 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30013 * 127.33685 * 2 1 4 4 O 1.20652 * 112.30365 * 179.73822 * 3 2 1 5 5 C 1.33493 * 113.15574 * 0.50167 * 4 3 2 6 6 C 1.50703 * 126.83040 * 179.78095 * 5 4 3 7 7 F 1.39900 * 109.47216 * 29.68666 * 6 5 4 8 8 F 1.39904 * 109.47244 * 149.69078 * 6 5 4 9 9 C 1.37358 * 106.34201 * 359.52002 * 5 4 3 10 10 C 1.47400 * 128.56950 * 180.27932 * 9 5 4 11 11 O 1.21609 * 120.00065 * 89.99646 * 10 9 5 12 12 N 1.34780 * 120.00043 * 270.00563 * 10 9 5 13 13 C 1.46498 * 120.00091 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47108 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.58545 * 59.62769 * 14 13 12 16 16 C 1.53194 * 109.58081 * 179.90884 * 14 13 12 17 17 C 1.53048 * 109.30702 * 174.42113 * 16 14 13 18 18 C 1.53037 * 109.53940 * 298.63764 * 17 16 14 19 19 C 1.53193 * 109.31367 * 61.36265 * 18 17 16 20 20 N 1.46922 * 109.58481 * 299.19584 * 14 13 12 21 21 C 1.36937 * 120.63367 * 6.63099 * 20 14 13 22 22 H 1.08005 * 119.99520 * 328.44014 * 21 20 14 23 23 C 1.38808 * 119.99968 * 148.43621 * 21 20 14 24 24 N 1.31624 * 119.99462 * 162.61447 * 23 21 20 25 25 Si 1.86799 * 120.00283 * 342.62003 * 23 21 20 26 26 H 1.48497 * 109.46993 * 89.99389 * 25 23 21 27 27 H 1.48499 * 109.46904 * 209.99215 * 25 23 21 28 28 H 1.48499 * 109.46856 * 329.99133 * 25 23 21 29 29 H 1.08996 * 109.46928 * 269.95247 * 1 2 3 30 30 H 1.08999 * 109.47348 * 29.95695 * 1 2 3 31 31 H 1.09004 * 109.47096 * 149.95467 * 1 2 3 32 32 H 1.09007 * 109.46868 * 269.68992 * 6 5 4 33 33 H 0.97005 * 119.99973 * 359.97438 * 12 10 9 34 34 H 1.09004 * 109.46711 * 299.99542 * 13 12 10 35 35 H 1.08995 * 109.47285 * 59.99221 * 13 12 10 36 36 H 1.08998 * 109.49763 * 294.37075 * 16 14 13 37 37 H 1.09000 * 109.49782 * 54.44190 * 16 14 13 38 38 H 1.09004 * 109.45813 * 58.65770 * 17 16 14 39 39 H 1.08997 * 109.46011 * 178.62711 * 17 16 14 40 40 H 1.08998 * 109.49549 * 181.31759 * 18 17 16 41 41 H 1.09003 * 109.49705 * 301.41153 * 18 17 16 42 42 H 1.09000 * 109.58232 * 65.15585 * 19 18 17 43 43 H 1.09005 * 109.58718 * 185.43533 * 19 18 17 44 44 H 0.97003 * 119.99239 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 0.0051 5 6 3.6494 -0.6008 -0.0013 6 6 4.9712 -1.3246 -0.0022 7 9 5.9293 -0.5470 0.6571 8 9 4.8319 -2.5508 0.6568 9 6 2.3992 -1.1696 -0.0009 10 6 2.0400 -2.5992 -0.0008 11 8 1.8923 -3.1890 1.0523 12 7 1.8755 -3.2528 -1.1680 13 6 1.5191 -4.6737 -1.1680 14 6 1.3937 -5.1681 -2.6105 15 1 2.3421 -5.0269 -3.1289 16 6 1.0232 -6.6546 -2.6134 17 6 0.7632 -7.1085 -4.0518 18 6 -0.4101 -6.3170 -4.6340 19 6 -0.0558 -4.8267 -4.6539 20 7 0.3359 -4.4157 -3.2988 21 6 -0.2728 -3.3513 -2.6892 22 1 -0.3926 -3.3399 -1.6159 23 6 -0.7357 -2.2871 -3.4507 24 7 -1.6060 -1.4420 -2.9400 25 14 -0.1236 -2.0543 -5.2001 26 1 -1.0117 -2.7883 -6.1370 27 1 -0.1328 -0.6086 -5.5394 28 1 1.2602 -2.5809 -5.3145 29 1 -0.3633 -0.0009 1.0276 30 1 -0.3634 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5146 32 1 5.2894 -1.4987 -1.0302 33 1 1.9931 -2.7822 -2.0081 34 1 2.2943 -5.2427 -0.6547 35 1 0.5678 -4.8097 -0.6536 36 1 1.8438 -7.2349 -2.1915 37 1 0.1248 -6.8068 -2.0154 38 1 1.6543 -6.9331 -4.6546 39 1 0.5232 -8.1717 -4.0592 40 1 -0.6097 -6.6571 -5.6502 41 1 -1.2954 -6.4723 -4.0174 42 1 0.7730 -4.6574 -5.3412 43 1 -0.9222 -4.2494 -4.9769 44 1 -1.9298 -0.6985 -3.4723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024504707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:25 Heat of formation + Delta-G solvation = -66.891133 kcal Electronic energy + Delta-G solvation = -32128.207958 eV Core-core repulsion = 27526.853989 eV Total energy + Delta-G solvation = -4601.353970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.25753 -48.28600 -46.19155 -40.84398 -39.46481 -35.84094 -35.78713 -34.82184 -34.20335 -32.55924 -32.26021 -29.88871 -28.46541 -27.60433 -26.55848 -25.00543 -24.24646 -22.36517 -21.99038 -21.51832 -20.86188 -19.58247 -19.38221 -18.56081 -18.33562 -18.25612 -18.03125 -17.30191 -17.10060 -16.76593 -16.42065 -15.46635 -15.26052 -15.18269 -15.08116 -14.97027 -14.76392 -14.58528 -14.53241 -14.35067 -14.28526 -14.08398 -13.80432 -13.70957 -13.55996 -13.20190 -12.91149 -12.71116 -12.52418 -12.50337 -12.28891 -11.93495 -11.66459 -11.54822 -11.48907 -11.17805 -11.08472 -11.03591 -10.96489 -10.58048 -9.97609 -8.72736 -8.02030 -5.37786 -0.19029 0.63974 1.14225 1.34199 1.37082 1.45869 1.52342 2.14857 2.49658 2.51832 2.87842 2.93686 3.13171 3.36968 3.41940 3.48242 3.70520 3.89578 3.94204 3.95647 4.11564 4.21781 4.35770 4.38332 4.46443 4.53463 4.55799 4.65512 4.66566 4.75853 4.91379 4.98004 5.09790 5.17665 5.20362 5.28532 5.33104 5.34963 5.48828 5.66660 6.01116 6.32033 6.50166 6.89155 7.01493 7.11528 7.73562 8.15739 9.14170 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.004734 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.666177 B = 5913.794721 C = 7140.162376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.057 3.943 3 N -0.357 5.357 4 O 0.130 5.870 5 C -0.073 4.073 6 C 0.369 3.631 7 F -0.185 7.185 8 F -0.186 7.186 9 C -0.208 4.208 10 C 0.595 3.405 11 O -0.567 6.567 12 N -0.674 5.674 13 C 0.137 3.863 14 C 0.162 3.838 15 H 0.058 0.942 16 C -0.124 4.124 17 C -0.103 4.103 18 C -0.131 4.131 19 C 0.121 3.879 20 N -0.616 5.616 21 C -0.232 4.232 22 H 0.064 0.936 23 C -0.015 4.015 24 N -0.937 5.937 25 Si 0.925 3.075 26 H -0.290 1.290 27 H -0.325 1.325 28 H -0.255 1.255 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.203 0.797 33 H 0.411 0.589 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.759 -5.241 -0.628 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 N -0.060 5.060 4 O 0.063 5.937 5 C -0.139 4.139 6 C 0.314 3.686 7 F -0.166 7.166 8 F -0.167 7.167 9 C -0.215 4.215 10 C 0.379 3.621 11 O -0.447 6.447 12 N -0.322 5.322 13 C 0.014 3.986 14 C 0.057 3.943 15 H 0.075 0.925 16 C -0.163 4.163 17 C -0.141 4.141 18 C -0.170 4.170 19 C -0.004 4.004 20 N -0.342 5.342 21 C -0.362 4.362 22 H 0.082 0.918 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.757 3.243 26 H -0.217 1.217 27 H -0.255 1.255 28 H -0.179 1.179 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.219 0.781 33 H 0.248 0.752 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.385 -4.256 0.108 13.096 hybrid contribution -0.735 0.283 -1.045 1.308 sum 11.650 -3.974 -0.937 12.345 Atomic orbital electron populations 1.20236 0.83912 1.05217 1.03715 1.25085 0.99480 0.85987 0.99785 1.73570 0.89330 1.23185 1.19921 1.84548 1.21139 1.21051 1.66925 1.25607 0.97683 0.85530 1.05075 1.20161 0.78103 0.73694 0.96619 1.93068 1.64242 1.75205 1.84111 1.93120 1.95647 1.43644 1.84313 1.22155 0.92755 0.95999 1.10597 1.16799 0.77363 0.83686 0.84297 1.90769 1.53211 1.68260 1.32450 1.45865 1.66744 1.11933 1.07678 1.21413 0.99907 0.79798 0.97495 1.20981 0.91175 0.91957 0.90195 0.92486 1.21906 1.01861 0.94910 0.97668 1.21361 0.97821 0.99366 0.95506 1.21934 0.98885 0.95365 1.00841 1.21382 0.97224 0.95299 0.86488 1.44532 1.41151 1.33606 1.14879 1.18745 1.30521 0.94211 0.92730 0.91840 1.25722 0.99029 0.96622 0.99729 1.69893 1.32154 1.17875 1.38306 0.86278 0.80217 0.74124 0.83722 1.21727 1.25545 1.17916 0.88908 0.89790 0.89840 0.78104 0.75181 0.89580 0.93691 0.89296 0.93049 0.91405 0.90545 0.90991 0.93341 0.95043 0.93912 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.72 10.49 71.24 0.75 -1.97 16 2 C 0.06 2.09 7.59 45.16 0.34 2.43 16 3 N -0.36 -12.30 12.01 -44.78 -0.54 -12.84 16 4 O 0.13 3.89 11.06 76.99 0.85 4.74 16 5 C -0.07 -2.06 7.13 25.48 0.18 -1.88 16 6 C 0.37 7.36 5.81 71.24 0.41 7.77 16 7 F -0.19 -3.86 17.32 44.97 0.78 -3.08 16 8 F -0.19 -4.77 16.11 44.97 0.72 -4.05 16 9 C -0.21 -7.22 6.19 -18.74 -0.12 -7.34 16 10 C 0.59 22.37 6.59 86.66 0.57 22.94 16 11 O -0.57 -24.63 17.11 -4.06 -0.07 -24.70 16 12 N -0.67 -23.55 3.87 -466.39 -1.81 -25.36 16 13 C 0.14 4.49 4.43 86.38 0.38 4.87 16 14 C 0.16 4.97 3.00 44.98 0.14 5.10 16 15 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 16 C -0.12 -3.12 5.37 30.68 0.16 -2.95 16 17 C -0.10 -2.39 5.88 30.62 0.18 -2.21 16 18 C -0.13 -3.82 6.08 30.67 0.19 -3.63 16 19 C 0.12 4.44 4.19 86.36 0.36 4.80 16 20 N -0.62 -23.96 2.71 -675.22 -1.83 -25.79 16 21 C -0.23 -10.98 7.44 84.03 0.63 -10.36 16 22 H 0.06 3.37 6.08 -2.91 -0.02 3.36 16 23 C -0.01 -0.75 5.26 84.86 0.45 -0.30 16 24 N -0.94 -51.69 13.97 21.65 0.30 -51.39 16 25 Si 0.93 41.82 24.34 68.60 1.67 43.49 16 26 H -0.29 -13.02 6.57 99.48 0.65 -12.36 16 27 H -0.33 -15.70 7.11 99.48 0.71 -14.99 16 28 H -0.26 -10.63 6.72 99.48 0.67 -9.96 16 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.08 3.68 8.14 -2.38 -0.02 3.66 16 32 H 0.20 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.41 14.53 7.43 -92.70 -0.69 13.84 16 34 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.04 1.74 7.38 -2.39 -0.02 1.73 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.03 1.11 7.03 -2.39 -0.02 1.10 16 43 H 0.04 1.82 4.76 -2.38 -0.01 1.81 16 44 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -64.11 363.07 4.98 -59.13 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.27 Total: 22.55 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 4.62 Total: 17.28 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -3.87 Total: -115.37 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.78 Total: -19.96 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 1.50 Total: -7.13 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.67 Total: 43.49 kcal Total: -64.11 4.98 -59.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024504707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.760 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds