Wall clock time and date at job start Wed Apr 1 2020 02:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46946 * 2 1 4 4 N 1.46506 * 109.47298 * 239.99686 * 2 1 3 5 5 C 1.34774 * 119.99465 * 84.99859 * 4 2 1 6 6 O 1.21680 * 120.00588 * 0.02562 * 5 4 2 7 7 C 1.46728 * 119.99663 * 180.02562 * 5 4 2 8 8 O 1.35343 * 126.64317 * 0.02562 * 7 5 4 9 9 C 1.33663 * 107.68390 * 179.97438 * 8 7 5 10 10 N 1.30614 * 109.15467 * 0.02562 * 9 8 7 11 11 C 1.33694 * 108.99711 * 359.76070 * 10 9 8 12 12 C 1.50696 * 126.27465 * 180.26051 * 11 10 9 13 13 F 1.39898 * 109.47490 * 30.13803 * 12 11 10 14 14 F 1.39900 * 109.47117 * 150.14018 * 12 11 10 15 15 C 1.53004 * 109.47167 * 119.99667 * 2 1 3 16 16 H 1.09001 * 109.49815 * 180.02562 * 15 2 1 17 17 C 1.53036 * 109.52225 * 300.14664 * 15 2 1 18 18 C 1.53045 * 109.53598 * 181.33322 * 17 15 2 19 19 C 1.53630 * 109.24023 * 298.51421 * 18 17 15 20 20 N 1.46921 * 108.54247 * 54.85343 * 19 18 17 21 21 C 1.36937 * 120.62612 * 126.37046 * 20 19 18 22 22 H 1.07998 * 120.00002 * 207.52827 * 21 20 19 23 23 C 1.38816 * 120.00353 * 27.52170 * 21 20 19 24 24 N 1.31623 * 119.99605 * 25.85418 * 23 21 20 25 25 Si 1.86798 * 120.00303 * 205.57558 * 23 21 20 26 26 H 1.48496 * 109.47254 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46775 * 120.00140 * 25 23 21 28 28 H 1.48502 * 109.47217 * 239.99955 * 25 23 21 29 29 C 1.46924 * 118.74129 * 306.09229 * 20 19 18 30 30 H 1.08991 * 109.47550 * 299.99860 * 1 2 3 31 31 H 1.08998 * 109.47260 * 60.00255 * 1 2 3 32 32 H 1.09006 * 109.46566 * 179.97438 * 1 2 3 33 33 H 0.96990 * 120.00162 * 264.99587 * 4 2 1 34 34 H 1.08003 * 125.41973 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47150 * 270.13568 * 12 11 10 36 36 H 1.09000 * 109.46431 * 301.34923 * 17 15 2 37 37 H 1.08999 * 109.46106 * 61.31716 * 17 15 2 38 38 H 1.08999 * 109.49721 * 58.58669 * 18 17 15 39 39 H 1.09001 * 109.49907 * 178.65451 * 18 17 15 40 40 H 1.08995 * 109.73693 * 295.11306 * 19 18 17 41 41 H 1.08997 * 109.65955 * 174.54978 * 19 18 17 42 42 H 0.96999 * 119.99925 * 4.04910 * 24 23 21 43 43 H 1.09005 * 109.58307 * 173.64915 * 29 20 19 44 44 H 1.08993 * 109.58946 * 294.07467 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8580 1.1624 -2.4117 7 6 2.6356 -0.7102 -3.5552 8 8 2.9932 -2.0123 -3.6468 9 6 3.3782 -2.2401 -4.9063 10 7 3.2733 -1.1341 -5.5932 11 6 2.8127 -0.1670 -4.7932 12 6 2.5413 1.2621 -5.1870 13 9 2.1726 1.3123 -6.5355 14 9 1.5035 1.7735 -4.4004 15 6 2.0400 -0.7212 1.2493 16 1 3.1300 -0.7210 1.2500 17 6 1.5275 -0.0027 2.4996 18 6 2.0647 -0.7042 3.7493 19 6 1.5498 -2.1514 3.7783 20 7 1.9188 -2.8040 2.5147 21 6 2.6073 -3.9877 2.5160 22 1 3.2476 -4.2408 1.6840 23 6 2.4822 -4.8623 3.5867 24 7 1.3917 -4.8487 4.3236 25 14 3.8583 -6.0636 3.9771 26 1 4.9644 -5.8830 3.0029 27 1 4.3626 -5.8094 5.3505 28 1 3.3422 -7.4533 3.8887 29 6 1.5297 -2.1656 1.2499 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 2.2491 -1.6317 -1.1526 34 1 3.7213 -3.1878 -5.2943 35 1 3.4409 1.8583 -5.0338 36 1 1.8688 1.0324 2.4893 37 1 0.4378 -0.0256 2.5105 38 1 3.1544 -0.7036 3.7267 39 1 1.7188 -0.1779 4.6389 40 1 0.4654 -2.1541 3.8880 41 1 2.0048 -2.6858 4.6122 42 1 0.6515 -4.2695 4.0838 43 1 1.9715 -2.7096 0.4150 44 1 0.4437 -2.1695 1.1575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025528121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:34 Heat of formation + Delta-G solvation = -90.726323 kcal Electronic energy + Delta-G solvation = -30954.470476 eV Core-core repulsion = 26352.082935 eV Total energy + Delta-G solvation = -4602.387541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.10425 -47.09588 -43.95851 -40.06622 -38.25797 -35.85914 -35.36381 -33.34451 -31.89480 -30.87372 -30.47154 -28.28394 -27.25769 -25.21464 -24.74574 -23.70875 -22.57459 -22.12672 -21.01236 -20.43264 -19.16280 -18.57312 -17.98730 -17.64256 -17.27176 -17.20815 -16.98961 -16.17005 -15.90556 -15.10163 -14.89439 -14.55259 -14.47609 -14.30714 -13.87911 -13.85810 -13.65584 -13.45326 -13.40053 -13.09997 -12.91372 -12.62034 -12.28130 -12.11242 -12.08132 -11.71471 -11.63708 -11.29699 -11.10869 -10.91215 -10.64511 -10.53589 -10.35191 -10.24908 -10.14391 -9.97786 -9.88715 -9.65849 -9.33414 -9.17376 -8.41015 -6.93562 -6.15654 -3.29422 0.26777 1.83246 1.93914 2.73845 2.90132 3.02797 3.45599 3.48376 3.61360 3.67885 3.92158 4.24208 4.50892 4.57558 4.73345 4.85888 4.90124 5.04270 5.06544 5.21805 5.27933 5.39593 5.46895 5.51081 5.53102 5.67319 5.80148 5.94065 6.01689 6.05043 6.12417 6.27505 6.38564 6.40502 6.44375 6.57456 6.63271 6.74626 6.89229 7.04115 7.14705 7.25795 7.82247 7.93092 8.50906 9.04469 9.77796 10.22557 11.14644 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.002909 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.330989 B = 9621.874312 C =11068.143903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.702 5.702 5 C 0.595 3.405 6 O -0.495 6.495 7 C -0.054 4.054 8 O -0.178 6.178 9 C 0.209 3.791 10 N -0.470 5.470 11 C -0.017 4.017 12 C 0.356 3.644 13 F -0.191 7.191 14 F -0.163 7.163 15 C -0.113 4.113 16 H 0.074 0.926 17 C -0.101 4.101 18 C -0.137 4.137 19 C 0.149 3.851 20 N -0.598 5.598 21 C -0.354 4.354 22 H 0.055 0.945 23 C -0.023 4.023 24 N -0.914 5.914 25 Si 1.069 2.931 26 H -0.292 1.292 27 H -0.290 1.290 28 H -0.294 1.294 29 C 0.153 3.847 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.408 0.592 34 H 0.264 0.736 35 H 0.130 0.870 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.017 0.983 41 H 0.078 0.922 42 H 0.270 0.730 43 H 0.048 0.952 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 9.864 -15.345 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.354 5.354 5 C 0.378 3.622 6 O -0.371 6.371 7 C -0.111 4.111 8 O -0.063 6.063 9 C -0.016 4.016 10 N -0.197 5.197 11 C -0.142 4.142 12 C 0.301 3.699 13 F -0.172 7.172 14 F -0.144 7.144 15 C -0.134 4.134 16 H 0.092 0.908 17 C -0.139 4.139 18 C -0.176 4.176 19 C 0.023 3.977 20 N -0.321 5.321 21 C -0.483 4.483 22 H 0.073 0.927 23 C -0.225 4.225 24 N -0.554 5.554 25 Si 0.899 3.101 26 H -0.219 1.219 27 H -0.216 1.216 28 H -0.221 1.221 29 C 0.026 3.974 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.244 0.756 34 H 0.280 0.720 35 H 0.148 0.852 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.359 9.515 -14.898 17.994 hybrid contribution -0.524 0.328 -0.640 0.890 sum 2.835 9.844 -15.539 18.611 Atomic orbital electron populations 1.22276 0.94932 1.02894 1.02372 1.21164 0.94505 0.96852 0.82892 0.89358 1.46154 1.65319 1.14736 1.09148 1.16378 0.78764 0.86091 0.81005 1.90998 1.49658 1.13405 1.82996 1.23213 1.07608 0.82232 0.98055 1.84607 1.61860 1.26385 1.33460 1.28498 0.96084 1.00052 0.76992 1.70228 1.17458 0.98854 1.33178 1.22502 1.03636 0.97945 0.90094 1.19327 0.89882 0.87756 0.72903 1.93030 1.93199 1.96996 1.33955 1.93203 1.60858 1.87168 1.73132 1.21960 1.00973 0.98079 0.92409 0.90753 1.21432 1.00368 0.97695 0.94379 1.22134 1.00783 0.98681 0.96025 1.21058 0.96255 0.90004 0.90374 1.44095 1.65913 1.22944 0.99160 1.19974 1.22556 0.96341 1.09381 0.92696 1.25838 1.00974 0.98730 0.96963 1.70734 1.03329 1.37913 1.43448 0.83475 0.75040 0.75672 0.75921 1.21862 1.21643 1.22085 1.20957 0.96350 0.89981 0.90074 0.90975 0.92486 0.91633 0.75561 0.72010 0.85247 0.93092 0.92050 0.92381 0.92926 0.96512 0.90334 0.91904 0.93369 0.95868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 8.79 37.16 0.33 -1.83 16 2 C 0.15 2.00 2.41 -67.93 -0.16 1.84 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 4 N -0.70 -9.06 4.99 -55.10 -0.28 -9.33 16 5 C 0.59 7.96 7.70 -12.83 -0.10 7.86 16 6 O -0.49 -7.53 12.80 5.21 0.07 -7.46 16 7 C -0.05 -0.65 7.14 -36.84 -0.26 -0.91 16 8 O -0.18 -1.82 10.57 4.43 0.05 -1.78 16 9 C 0.21 1.65 13.21 52.24 0.69 2.34 16 10 N -0.47 -5.11 11.21 -10.89 -0.12 -5.23 16 11 C -0.02 -0.20 6.78 -82.47 -0.56 -0.76 16 12 C 0.36 3.96 5.62 36.00 0.20 4.16 16 13 F -0.19 -2.31 17.29 2.25 0.04 -2.27 16 14 F -0.16 -2.22 13.49 2.25 0.03 -2.19 16 15 C -0.11 -1.76 2.33 -90.50 -0.21 -1.97 16 16 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 17 C -0.10 -1.52 4.77 -26.69 -0.13 -1.65 16 18 C -0.14 -2.42 6.10 -26.38 -0.16 -2.58 16 19 C 0.15 3.31 4.72 -3.49 -0.02 3.29 16 20 N -0.60 -14.03 2.85 -172.06 -0.49 -14.52 16 21 C -0.35 -9.40 9.49 -15.06 -0.14 -9.54 16 22 H 0.06 1.46 7.95 -52.49 -0.42 1.05 16 23 C -0.02 -0.62 4.66 -17.43 -0.08 -0.70 16 24 N -0.91 -26.55 12.46 55.49 0.69 -25.86 16 25 Si 1.07 24.51 29.99 -169.99 -5.10 19.41 16 26 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.15 2.88 5.29 -3.71 -0.02 2.86 16 30 H 0.07 0.87 6.46 -51.93 -0.34 0.54 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.89 6.32 -51.93 -0.33 0.56 16 33 H 0.41 5.11 6.76 -40.82 -0.28 4.83 16 34 H 0.26 0.60 8.06 -52.48 -0.42 0.17 16 35 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 41 H 0.08 1.98 6.31 -51.93 -0.33 1.66 16 42 H 0.27 7.89 6.69 -40.82 -0.27 7.61 16 43 H 0.05 0.89 6.52 -51.93 -0.34 0.55 16 44 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -32.56 358.03 -5.85 -38.41 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.51 Total: 3.00 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.62 Total: 2.42 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.20 Total: -54.95 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.11 Total: -9.24 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.10 Total: 19.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.56 -5.85 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025528121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.317 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds