Wall clock time and date at job start Wed Apr 1 2020 01:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30019 * 127.33824 * 2 1 4 4 O 1.20652 * 112.30343 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.15658 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.82947 * 180.02562 * 5 4 3 7 7 F 1.39894 * 109.47180 * 120.02825 * 6 5 4 8 8 F 1.39901 * 109.47070 * 240.03454 * 6 5 4 9 9 C 1.37360 * 106.34098 * 0.02562 * 5 4 3 10 10 C 1.47399 * 128.56329 * 179.97438 * 9 5 4 11 11 O 1.21606 * 119.99808 * 89.99865 * 10 9 5 12 12 N 1.34779 * 120.00188 * 269.99986 * 10 9 5 13 13 C 1.46927 * 120.62841 * 359.72351 * 12 10 9 14 14 C 1.52759 * 109.00269 * 233.58216 * 13 12 10 15 15 C 1.53035 * 109.38588 * 305.58550 * 14 13 12 16 16 C 1.53044 * 109.53650 * 61.24364 * 15 14 13 17 17 H 1.08994 * 109.52457 * 58.60453 * 16 15 14 18 18 N 1.46499 * 109.49731 * 178.68255 * 16 15 14 19 19 C 1.46508 * 120.00003 * 59.83686 * 18 16 15 20 20 C 1.36935 * 120.00301 * 239.83778 * 18 16 15 21 21 H 1.08001 * 119.99864 * 20.39947 * 20 18 16 22 22 C 1.38812 * 120.00178 * 200.40114 * 20 18 16 23 23 N 1.31623 * 120.00015 * 14.97802 * 22 20 18 24 24 Si 1.86796 * 120.00020 * 194.97355 * 22 20 18 25 25 H 1.48509 * 109.46861 * 85.00393 * 24 22 20 26 26 H 1.48503 * 109.47498 * 205.00360 * 24 22 20 27 27 H 1.48508 * 109.47427 * 325.00813 * 24 22 20 28 28 C 1.46920 * 120.63141 * 179.97438 * 12 10 9 29 29 H 1.08995 * 109.47667 * 270.00374 * 1 2 3 30 30 H 1.09010 * 109.46978 * 30.00591 * 1 2 3 31 31 H 1.08999 * 109.47407 * 150.00245 * 1 2 3 32 32 H 1.08998 * 109.46912 * 0.02649 * 6 5 4 33 33 H 1.09001 * 109.58478 * 353.41685 * 13 12 10 34 34 H 1.09001 * 109.58503 * 113.84162 * 13 12 10 35 35 H 1.09006 * 109.56178 * 185.55227 * 14 13 12 36 36 H 1.09000 * 109.36084 * 65.50292 * 14 13 12 37 37 H 1.08997 * 109.46235 * 301.22314 * 15 14 13 38 38 H 1.09004 * 109.46196 * 181.26079 * 15 14 13 39 39 H 1.09004 * 109.46685 * 95.11350 * 19 18 16 40 40 H 1.08998 * 109.46990 * 215.11196 * 19 18 16 41 41 H 1.08998 * 109.47052 * 335.11466 * 19 18 16 42 42 H 0.96999 * 119.99464 * 179.97438 * 23 22 20 43 43 H 1.08998 * 109.59119 * 246.15994 * 28 12 10 44 44 H 1.09000 * 109.58669 * 6.44159 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 -0.0004 6 6 4.9712 -1.3247 -0.0003 7 9 5.0632 -2.1275 1.1416 8 9 5.0637 -2.1266 -1.1430 9 6 2.3991 -1.1696 -0.0003 10 6 2.0400 -2.5992 -0.0007 11 8 1.8921 -3.1892 1.0524 12 7 1.8755 -3.2524 -1.1680 13 6 2.0449 -2.5517 -2.4483 14 6 0.7937 -2.7611 -3.2993 15 6 0.5165 -4.2601 -3.4347 16 6 0.2670 -4.8615 -2.0497 17 1 -0.5776 -4.3572 -1.5803 18 7 -0.0293 -6.2901 -2.1831 19 6 0.9558 -7.1889 -2.7899 20 6 -1.2269 -6.7853 -1.7408 21 1 -2.0681 -6.1219 -1.6042 22 6 -1.3596 -8.1398 -1.4680 23 7 -0.2883 -8.8946 -1.3459 24 14 -3.0587 -8.8914 -1.2741 25 1 -3.5953 -9.2534 -2.6107 26 1 -2.9676 -10.1102 -0.4305 27 1 -3.9641 -7.9080 -0.6270 28 6 1.5182 -4.6774 -1.1845 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3634 -0.8900 -0.5138 32 1 5.7834 -0.5978 0.0000 33 1 2.1870 -1.4865 -2.2657 34 1 2.9118 -2.9535 -2.9728 35 1 0.9483 -2.3290 -4.2880 36 1 -0.0557 -2.2760 -2.8184 37 1 1.3764 -4.7484 -3.8930 38 1 -0.3631 -4.4117 -4.0603 39 1 1.5544 -7.6538 -2.0064 40 1 0.4400 -7.9616 -3.3599 41 1 1.6059 -6.6199 -3.4545 42 1 -0.3811 -9.8411 -1.1548 43 1 2.3413 -5.2558 -1.6041 44 1 1.3153 -5.0150 -0.1682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027460939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:15 Heat of formation + Delta-G solvation = -39.529227 kcal Electronic energy + Delta-G solvation = -31859.729497 eV Core-core repulsion = 27259.562028 eV Total energy + Delta-G solvation = -4600.167469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.47527 -47.48226 -45.34662 -39.99942 -37.53728 -35.24021 -34.89893 -33.33586 -32.32265 -31.35020 -29.25581 -28.88667 -27.40788 -26.04150 -25.72732 -24.10417 -23.29249 -21.77018 -21.21483 -20.06260 -18.94314 -18.48127 -18.18658 -17.77713 -17.38188 -17.21046 -16.77250 -16.18784 -15.53469 -15.09449 -14.62386 -14.31868 -14.23289 -14.08440 -13.84541 -13.80487 -13.70864 -13.65322 -13.46035 -13.40114 -12.99370 -12.72558 -12.61875 -12.38282 -11.96145 -11.88997 -11.61563 -11.26718 -11.07630 -10.82877 -10.69361 -10.46785 -10.42489 -10.33268 -10.30198 -10.19260 -9.93937 -9.82192 -9.74176 -8.63457 -8.42372 -6.81804 -5.74353 -3.18770 0.62688 1.49588 1.89679 2.35989 2.96563 3.38758 3.43558 3.44832 3.46114 3.57226 3.69737 4.04000 4.25588 4.39550 4.47423 4.56939 4.74172 4.85640 5.07455 5.13087 5.20910 5.23358 5.32411 5.40605 5.46478 5.53935 5.69347 5.72085 5.83932 5.92526 6.06179 6.16638 6.31180 6.42790 6.55999 6.72695 6.86014 6.90830 7.35959 7.44607 7.68838 7.69530 7.79847 8.11671 8.36310 9.20619 9.83566 10.31001 11.30411 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.003300 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.643561 B = 8482.625896 C = 8849.864486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.055 3.945 3 N -0.337 5.337 4 O 0.122 5.878 5 C -0.092 4.092 6 C 0.362 3.638 7 F -0.173 7.173 8 F -0.176 7.176 9 C -0.170 4.170 10 C 0.582 3.418 11 O -0.514 6.514 12 N -0.588 5.588 13 C 0.110 3.890 14 C -0.130 4.130 15 C -0.134 4.134 16 C 0.170 3.830 17 H 0.065 0.935 18 N -0.591 5.591 19 C 0.160 3.840 20 C -0.258 4.258 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.905 5.905 24 Si 0.905 3.095 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.098 3.902 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.044 0.956 41 H 0.001 0.999 42 H 0.253 0.747 43 H 0.067 0.933 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 19.805 -2.422 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 N -0.040 5.040 4 O 0.054 5.946 5 C -0.157 4.157 6 C 0.307 3.693 7 F -0.154 7.154 8 F -0.157 7.157 9 C -0.178 4.178 10 C 0.366 3.634 11 O -0.389 6.389 12 N -0.320 5.320 13 C -0.013 4.013 14 C -0.169 4.169 15 C -0.173 4.173 16 C 0.060 3.940 17 H 0.084 0.916 18 N -0.312 5.312 19 C 0.016 3.984 20 C -0.387 4.387 21 H 0.087 0.913 22 C -0.195 4.195 23 N -0.549 5.549 24 Si 0.735 3.265 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.025 4.025 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.019 0.981 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.395 20.498 -1.827 22.622 hybrid contribution -0.890 -1.347 0.145 1.621 sum 8.505 19.150 -1.682 21.021 Atomic orbital electron populations 1.20314 0.84311 1.04660 1.04513 1.24884 0.99031 0.85781 1.00979 1.73603 0.88893 1.22969 1.18501 1.84534 1.21758 1.20789 1.67473 1.24935 0.97242 0.85628 1.07884 1.19188 0.92095 0.85329 0.72677 1.93148 1.96545 1.75575 1.50145 1.93115 1.96585 1.75763 1.50254 1.22362 0.92225 0.96575 1.06590 1.16923 0.78474 0.83430 0.84565 1.90879 1.50200 1.67074 1.30755 1.48221 1.67098 1.12007 1.04709 1.21651 0.98999 0.96287 0.84363 1.21830 0.97206 0.98499 0.99331 1.22104 1.02022 0.93070 1.00129 1.20624 0.94362 0.86874 0.92110 0.91640 1.43972 1.17165 1.01370 1.68692 1.20812 0.91016 0.91625 0.94949 1.19221 0.87567 0.92270 1.39639 0.91259 1.24976 0.97071 0.97473 0.99956 1.70087 1.26677 1.05885 1.52260 0.86262 0.83925 0.78728 0.77549 1.21460 1.21723 1.20546 1.22729 0.98978 0.76976 1.03840 0.89114 0.89512 0.89209 0.83850 0.91220 0.90876 0.91002 0.91775 0.92062 0.91461 0.95172 0.93752 0.98102 0.93663 0.91506 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.49 36.00 0.38 -0.39 16 2 C 0.05 0.65 7.54 -79.77 -0.60 0.05 16 3 N -0.34 -3.93 12.01 34.78 0.42 -3.51 16 4 O 0.12 1.27 11.06 18.65 0.21 1.48 16 5 C -0.09 -1.02 6.98 -34.63 -0.24 -1.26 16 6 C 0.36 3.28 5.68 36.01 0.20 3.48 16 7 F -0.17 -2.13 17.32 2.25 0.04 -2.09 16 8 F -0.18 -1.87 17.32 2.25 0.04 -1.83 16 9 C -0.17 -2.29 4.19 -102.89 -0.43 -2.72 16 10 C 0.58 9.72 7.52 -12.53 -0.09 9.63 16 11 O -0.51 -10.73 16.52 5.27 0.09 -10.64 16 12 N -0.59 -9.24 2.98 -174.29 -0.52 -9.76 16 13 C 0.11 1.35 6.31 -3.93 -0.02 1.32 16 14 C -0.13 -1.56 6.06 -26.84 -0.16 -1.72 16 15 C -0.13 -2.10 5.13 -26.69 -0.14 -2.24 16 16 C 0.17 3.33 2.74 -67.79 -0.19 3.15 16 17 H 0.07 1.35 7.85 -51.93 -0.41 0.94 16 18 N -0.59 -14.31 2.82 -173.32 -0.49 -14.79 16 19 C 0.16 3.82 7.92 59.85 0.47 4.29 16 20 C -0.26 -6.96 9.61 -15.06 -0.14 -7.10 16 21 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 23 N -0.90 -26.17 10.67 55.49 0.59 -25.58 16 24 Si 0.91 21.79 29.58 -169.99 -5.03 16.76 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.10 1.86 5.80 -3.69 -0.02 1.84 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.76 6.30 -51.93 -0.33 0.43 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.79 7.40 -51.93 -0.38 0.40 16 40 H 0.04 1.14 7.22 -51.93 -0.37 0.77 16 41 H 0.00 0.01 6.45 -51.93 -0.34 -0.32 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.07 1.28 7.52 -51.93 -0.39 0.89 16 44 H 0.09 2.11 7.00 -51.93 -0.36 1.75 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -32.77 370.34 -6.01 -38.78 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.86 Total: -2.75 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.08 Total: 8.34 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.00 Total: -53.64 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.29 Total: -9.16 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.77 -6.01 -38.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027460939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.750 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds