Wall clock time and date at job start Wed Apr 1 2020 02:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00280 * 2 1 4 4 O 1.21563 * 120.00004 * 175.43222 * 3 2 1 5 5 C 1.47775 * 119.99766 * 355.42770 * 3 2 1 6 6 C 1.40604 * 119.79207 * 222.22007 * 5 3 2 7 7 C 1.35924 * 120.89733 * 179.97438 * 6 5 3 8 8 F 1.35087 * 119.97332 * 180.02562 * 7 6 5 9 9 C 1.40965 * 120.05678 * 359.97438 * 7 6 5 10 10 N 1.33625 * 120.84317 * 180.02562 * 9 7 6 11 11 C 1.31109 * 121.39913 * 179.97438 * 10 9 7 12 12 C 1.39324 * 121.76964 * 0.02562 * 11 10 9 13 13 C 1.36581 * 119.89314 * 359.97438 * 12 11 10 14 14 C 1.40898 * 118.15916 * 0.02562 * 13 12 11 15 15 C 1.38538 * 119.79163 * 41.95099 * 5 3 2 16 16 C 1.46503 * 119.99851 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.91386 * 183.90093 * 16 2 1 18 18 C 1.55153 * 111.00667 * 59.99615 * 16 2 1 19 19 C 1.54320 * 102.94158 * 206.42285 * 18 16 2 20 20 N 1.47017 * 107.27289 * 22.19583 * 19 18 16 21 21 C 1.36939 * 125.64952 * 181.01937 * 20 19 18 22 22 H 1.08006 * 119.99841 * 185.39745 * 21 20 19 23 23 C 1.38804 * 120.00056 * 5.40051 * 21 20 19 24 24 N 1.31623 * 120.00174 * 5.72196 * 23 21 20 25 25 Si 1.86801 * 120.00124 * 186.00475 * 23 21 20 26 26 H 1.48508 * 109.47088 * 264.72653 * 25 23 21 27 27 H 1.48494 * 109.46999 * 24.72645 * 25 23 21 28 28 H 1.48500 * 109.47416 * 144.72857 * 25 23 21 29 29 C 1.47421 * 108.70373 * 1.28409 * 20 19 18 30 30 H 1.08998 * 109.46630 * 275.21005 * 1 2 3 31 31 H 1.08996 * 109.47123 * 35.20648 * 1 2 3 32 32 H 1.09003 * 109.47187 * 155.20858 * 1 2 3 33 33 H 1.08002 * 119.55421 * 0.02562 * 6 5 3 34 34 H 1.08004 * 119.11606 * 179.97438 * 11 10 9 35 35 H 1.07995 * 120.05358 * 179.97438 * 12 11 10 36 36 H 1.08002 * 120.91656 * 180.02562 * 13 12 11 37 37 H 1.08003 * 120.27029 * 0.02562 * 15 5 3 38 38 H 1.09001 * 110.71753 * 88.05956 * 18 16 2 39 39 H 1.09000 * 110.87380 * 324.86116 * 18 16 2 40 40 H 1.09001 * 109.88407 * 262.77527 * 19 18 16 41 41 H 1.09007 * 109.88179 * 141.60961 * 19 18 16 42 42 H 0.96997 * 120.00607 * 180.27534 * 24 23 21 43 43 H 1.09003 * 110.36921 * 94.47925 * 29 20 19 44 44 H 1.09004 * 110.37027 * 216.80463 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1688 0.0838 5 6 1.4036 2.4449 -0.1020 6 6 1.8939 3.4688 -0.9316 7 6 1.2354 4.6527 -1.0426 8 9 1.7230 5.6235 -1.8455 9 6 0.0435 4.8680 -0.3214 10 7 -0.6169 6.0255 -0.4192 11 6 -1.7266 6.2372 0.2462 12 6 -2.2733 5.2704 1.0873 13 6 -1.6496 4.0642 1.2338 14 6 -0.4573 3.8407 0.5170 15 6 0.2325 2.6243 0.6160 16 6 2.1975 -1.2688 -0.0006 17 1 3.2718 -1.0979 0.0688 18 6 1.8483 -2.1120 -1.2553 19 6 2.1063 -3.5582 -0.7825 20 7 2.0264 -3.5584 0.6855 21 6 2.2161 -4.6465 1.4950 22 1 2.0502 -4.5635 2.5590 23 6 2.6215 -5.8561 0.9481 24 7 2.9324 -5.9298 -0.3288 25 14 2.7185 -7.3812 2.0224 26 1 4.1085 -7.5507 2.5170 27 1 1.7969 -7.2325 3.1772 28 1 2.3273 -8.5727 1.2271 29 6 1.7020 -2.1945 1.1414 30 1 -0.3632 0.0933 1.0234 31 1 -0.3633 0.8397 -0.5925 32 1 -0.3634 -0.9330 -0.4309 33 1 2.8057 3.3122 -1.4888 34 1 -2.2300 7.1868 0.1400 35 1 -3.1887 5.4745 1.6227 36 1 -2.0591 3.3028 1.8812 37 1 -0.1441 1.8348 1.2494 38 1 2.5042 -1.8554 -2.0871 39 1 0.8032 -1.9782 -1.5346 40 1 3.0980 -3.8806 -1.0999 41 1 1.3481 -4.2239 -1.1951 42 1 3.2119 -6.7759 -0.7119 43 1 0.6263 -2.0867 1.2805 44 1 2.2297 -1.9687 2.0682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033509183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:10 Heat of formation + Delta-G solvation = 22.232838 kcal Electronic energy + Delta-G solvation = -29172.703985 eV Core-core repulsion = 25005.983946 eV Total energy + Delta-G solvation = -4166.720040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.13958 -41.32933 -40.04869 -37.69020 -36.83488 -35.01726 -33.76942 -32.28612 -31.21410 -30.34486 -29.17979 -27.59912 -26.99738 -25.27227 -24.67754 -24.13069 -22.54836 -21.34870 -20.18295 -19.38828 -18.87020 -17.95581 -17.75612 -17.02772 -16.72270 -16.23345 -16.02182 -15.93331 -15.38708 -14.98933 -14.81107 -14.63885 -14.34382 -14.13647 -13.90709 -13.62192 -13.46342 -13.16341 -12.93258 -12.77155 -12.46476 -12.31886 -12.18398 -11.98315 -11.84947 -11.71111 -10.97464 -10.90919 -10.90134 -10.83842 -10.35666 -10.13113 -10.06148 -9.94662 -9.86052 -9.74391 -9.35343 -8.69279 -8.55619 -8.48877 -6.89063 -5.74639 -3.11685 -0.25285 0.14715 1.37222 2.04809 2.74946 2.98239 3.37796 3.43069 3.45045 3.51284 3.54144 3.80030 4.09956 4.16192 4.33107 4.37835 4.46856 4.55929 4.78986 4.83891 5.02439 5.06256 5.19235 5.25194 5.35609 5.41194 5.45189 5.48760 5.55879 5.57113 5.62949 5.66136 5.76542 5.78837 5.95441 6.10866 6.21086 6.28243 6.43600 6.48670 6.60034 6.84510 7.33811 7.38862 7.42115 7.59522 7.77590 8.08406 8.21337 9.15592 9.76175 10.40592 11.34956 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023817 B = 0.002296 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.343080 B =12189.954573 C =12913.178319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.591 5.591 3 C 0.556 3.444 4 O -0.527 6.527 5 C -0.089 4.089 6 C -0.096 4.096 7 C 0.123 3.877 8 F -0.119 7.119 9 C 0.109 3.891 10 N -0.468 5.468 11 C 0.138 3.862 12 C -0.170 4.170 13 C -0.049 4.049 14 C -0.086 4.086 15 C -0.073 4.073 16 C 0.122 3.878 17 H 0.110 0.890 18 C -0.152 4.152 19 C 0.174 3.826 20 N -0.601 5.601 21 C -0.230 4.230 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.913 3.087 26 H -0.288 1.288 27 H -0.281 1.281 28 H -0.290 1.290 29 C 0.132 3.868 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.164 0.836 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.253 0.747 43 H 0.023 0.977 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.807 22.676 0.510 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.322 5.322 3 C 0.343 3.657 4 O -0.404 6.404 5 C -0.092 4.092 6 C -0.117 4.117 7 C 0.103 3.897 8 F -0.098 7.098 9 C -0.014 4.014 10 N -0.176 5.176 11 C -0.035 4.035 12 C -0.190 4.190 13 C -0.075 4.075 14 C -0.089 4.089 15 C -0.092 4.092 16 C 0.019 3.981 17 H 0.128 0.872 18 C -0.191 4.191 19 C 0.049 3.951 20 N -0.328 5.328 21 C -0.358 4.358 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.566 5.566 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.206 1.206 28 H -0.216 1.216 29 C 0.004 3.996 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.635 23.044 -0.096 25.815 hybrid contribution -0.347 -1.267 0.886 1.585 sum -11.982 21.777 0.790 24.868 Atomic orbital electron populations 1.22107 0.79921 1.03947 1.01540 1.47744 1.06999 1.05851 1.71640 1.18113 0.87096 0.83201 0.77333 1.90824 1.13283 1.86888 1.49401 1.19707 0.95538 0.94996 0.99006 1.20783 1.00829 0.90789 0.99272 1.16848 0.92773 0.86709 0.93383 1.91541 1.86750 1.61201 1.70259 1.18872 0.94831 0.90984 0.96683 1.68039 1.08053 1.19946 1.21529 1.23076 0.90728 0.99167 0.90510 1.21989 1.01929 0.94545 1.00494 1.21564 0.92409 0.97581 0.95923 1.18544 0.96957 0.94582 0.98769 1.21829 0.92923 0.96345 0.98147 1.22624 0.97555 0.80489 0.97446 0.87224 1.23239 1.00537 0.98646 0.96710 1.21223 1.01539 0.88849 0.83482 1.44384 1.83031 1.03194 1.02195 1.19042 1.39245 0.87237 0.90325 0.90379 1.24832 1.00993 0.98128 0.96384 1.69946 1.50791 1.24856 1.11051 0.86089 0.77744 0.82676 0.79163 1.21556 1.20628 1.21620 1.21804 0.97037 0.85926 0.94793 0.92143 0.91078 0.89753 0.82993 0.81867 0.83865 0.83413 0.83039 0.91750 0.92121 0.91753 0.94846 0.93663 0.95959 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 7.50 59.85 0.45 1.14 16 2 N -0.59 -8.37 2.91 -172.48 -0.50 -8.87 16 3 C 0.56 8.23 7.30 -12.36 -0.09 8.14 16 4 O -0.53 -9.85 16.33 5.31 0.09 -9.76 16 5 C -0.09 -1.05 5.15 -105.00 -0.54 -1.59 16 6 C -0.10 -1.12 9.51 -39.52 -0.38 -1.50 16 7 C 0.12 1.47 7.29 -39.38 -0.29 1.18 16 8 F -0.12 -1.53 17.10 2.25 0.04 -1.49 16 9 C 0.11 1.22 6.61 -84.72 -0.56 0.66 16 10 N -0.47 -5.04 10.19 -10.87 -0.11 -5.15 16 11 C 0.14 0.96 11.15 -17.46 -0.19 0.76 16 12 C -0.17 -0.88 10.03 -39.78 -0.40 -1.28 16 13 C -0.05 -0.30 9.89 -39.17 -0.39 -0.68 16 14 C -0.09 -0.78 5.74 -106.82 -0.61 -1.39 16 15 C -0.07 -0.67 7.36 -38.74 -0.29 -0.95 16 16 C 0.12 2.17 3.46 -65.66 -0.23 1.95 16 17 H 0.11 2.21 7.02 -51.93 -0.36 1.85 16 18 C -0.15 -2.76 6.49 -24.90 -0.16 -2.92 16 19 C 0.17 4.10 5.43 -3.07 -0.02 4.09 16 20 N -0.60 -14.98 3.39 -169.93 -0.58 -15.55 16 21 C -0.23 -6.30 10.27 -15.06 -0.15 -6.46 16 22 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 23 C -0.01 -0.19 5.46 -17.43 -0.10 -0.28 16 24 N -0.92 -26.64 10.42 55.49 0.58 -26.06 16 25 Si 0.91 21.79 29.56 -169.99 -5.02 16.77 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 C 0.13 2.63 6.79 -2.41 -0.02 2.61 16 30 H 0.06 0.50 6.85 -51.93 -0.36 0.14 16 31 H 0.07 0.59 6.01 -51.93 -0.31 0.28 16 32 H 0.08 0.92 6.37 -51.93 -0.33 0.58 16 33 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.16 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 36 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.15 1.07 5.53 -52.48 -0.29 0.78 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 40 H 0.06 1.71 6.94 -51.93 -0.36 1.35 16 41 H 0.03 0.85 7.92 -51.92 -0.41 0.44 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.02 0.42 6.96 -51.93 -0.36 0.06 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -34.02 361.38 -9.23 -43.25 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.21 Total: -2.06 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -3.96 Total: 3.48 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.61 Total: -55.64 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.02 -9.23 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033509183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.480 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds